Wall clock time and date at job start Tue Mar 31 2020 05:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46889 * 2 1 4 4 C 1.53001 * 109.46889 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47072 * 179.97438 * 4 3 2 6 6 H 1.09008 * 109.47073 * 304.99733 * 5 4 3 7 7 C 1.52995 * 109.47404 * 64.99776 * 5 4 3 8 8 C 1.53006 * 109.46742 * 55.13339 * 7 5 4 9 9 C 1.53002 * 109.47086 * 185.00362 * 5 4 3 10 10 N 1.46902 * 109.46745 * 176.84522 * 9 5 4 11 11 C 1.46956 * 111.00027 * 293.79216 * 10 9 5 12 12 C 1.53046 * 109.36463 * 176.81464 * 11 10 9 13 13 N 1.46952 * 109.36386 * 58.40683 * 12 11 10 14 14 C 1.46903 * 111.00342 * 176.81045 * 13 12 11 15 15 C 1.50699 * 109.47071 * 293.79953 * 14 13 12 16 16 H 1.08001 * 120.00001 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00182 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00025 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99932 * 359.97438 * 17 15 14 20 20 H 1.48513 * 109.46611 * 90.00376 * 19 17 15 21 21 H 1.48495 * 109.47313 * 209.99822 * 19 17 15 22 22 H 1.48493 * 109.47090 * 330.00633 * 19 17 15 23 23 C 1.46954 * 110.87955 * 300.67485 * 13 12 11 24 24 C 1.46959 * 110.99482 * 169.99824 * 10 9 5 25 25 H 1.09006 * 109.46885 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47470 * 299.99955 * 1 2 3 27 27 H 1.09000 * 109.47125 * 60.00688 * 1 2 3 28 28 H 1.09005 * 109.47010 * 239.99649 * 2 1 3 29 29 H 1.08999 * 109.46845 * 120.00039 * 2 1 3 30 30 H 1.08996 * 109.47523 * 59.99945 * 3 2 1 31 31 H 1.09002 * 109.47100 * 299.99288 * 3 2 1 32 32 H 1.09006 * 109.47049 * 60.00435 * 4 3 2 33 33 H 1.08996 * 109.47302 * 299.99798 * 4 3 2 34 34 H 1.09007 * 109.47337 * 295.13994 * 7 5 4 35 35 H 1.08995 * 109.47434 * 175.13146 * 7 5 4 36 36 H 1.09000 * 109.46998 * 174.17749 * 8 7 5 37 37 H 1.09002 * 109.47028 * 54.18318 * 8 7 5 38 38 H 1.08995 * 109.47293 * 294.18301 * 8 7 5 39 39 H 1.09001 * 109.46861 * 296.84099 * 9 5 4 40 40 H 1.08991 * 109.47522 * 56.84101 * 9 5 4 41 41 H 1.09006 * 109.48775 * 296.78778 * 11 10 9 42 42 H 1.09004 * 109.48960 * 56.84444 * 11 10 9 43 43 H 1.08999 * 109.49411 * 298.43335 * 12 11 10 44 44 H 1.09007 * 109.48906 * 178.37033 * 12 11 10 45 45 H 1.09003 * 109.46808 * 53.79448 * 14 13 12 46 46 H 1.08997 * 109.47412 * 173.79416 * 14 13 12 47 47 H 0.97006 * 120.00043 * 179.97438 * 18 17 15 48 48 H 1.08997 * 109.49314 * 299.35819 * 23 13 12 49 49 H 1.09005 * 109.49056 * 179.28935 * 23 13 12 50 50 H 1.08996 * 109.49140 * 303.14826 * 24 10 9 51 51 H 1.09000 * 109.49182 * 63.22124 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6457 3.4236 -0.8424 7 6 3.6746 3.5699 1.3067 8 6 4.1819 2.7467 2.4925 9 6 5.6049 2.8868 -0.1252 10 7 6.0882 4.2719 -0.2018 11 6 5.6381 4.9189 -1.4421 12 6 6.0939 6.3799 -1.4466 13 7 7.5577 6.4341 -1.3291 14 6 8.0412 7.8191 -1.4057 15 6 7.7749 8.3686 -2.7835 16 1 7.2949 7.7506 -3.5278 17 6 8.1440 9.6603 -3.0938 18 7 7.9121 10.1396 -4.2963 19 14 8.9736 10.7295 -1.8061 20 1 10.4458 10.5529 -1.8899 21 1 8.6313 12.1537 -2.0500 22 1 8.5034 10.3317 -0.4549 23 6 8.0078 5.7871 -0.0887 24 6 7.5521 4.3260 -0.0842 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.9337 0.9286 -0.8892 33 1 3.9329 0.9288 0.8908 34 1 2.5883 3.6459 1.3554 35 1 4.1108 4.5681 1.3442 36 1 3.9844 3.2851 3.4195 37 1 5.2545 2.5831 2.3889 38 1 3.6682 1.7857 2.5140 39 1 6.0414 2.3973 0.7454 40 1 5.8960 2.3499 -1.0279 41 1 6.0685 4.4009 -2.2993 42 1 4.5505 4.8770 -1.5002 43 1 5.6418 6.9046 -0.6050 44 1 5.7862 6.8540 -2.3787 45 1 7.5210 8.4270 -0.6654 46 1 9.1125 7.8416 -1.2064 47 1 8.1715 11.0485 -4.5145 48 1 7.5774 6.3049 0.7684 49 1 9.0955 5.8290 -0.0307 50 1 7.8598 3.8520 0.8479 51 1 8.0042 3.8015 -0.9259 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612823090.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:15 Heat of formation + Delta-G solvation = -20.026374 kcal Electronic energy + Delta-G solvation = -23228.991832 eV Core-core repulsion = 20162.122402 eV Total energy + Delta-G solvation = -3066.869429 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.27632 -37.59088 -35.25916 -33.87467 -32.31644 -30.50086 -30.13765 -29.12607 -27.26212 -25.17654 -23.92813 -23.10492 -22.88920 -21.22081 -20.92906 -19.26366 -18.80553 -16.78109 -16.20196 -15.78621 -15.40002 -14.91625 -14.46534 -14.39363 -14.26808 -13.96979 -13.72332 -13.64584 -13.17238 -13.07300 -12.72855 -12.48203 -12.37781 -12.27593 -11.92089 -11.85526 -11.57392 -11.39194 -11.35615 -11.07896 -10.90137 -10.85921 -10.76528 -10.67490 -10.46515 -10.43259 -10.26379 -10.14480 -9.91661 -9.76415 -9.24283 -8.55563 -8.07362 -7.32569 -6.04077 -4.01209 3.29572 3.36931 3.39665 4.05379 4.43358 4.58945 4.67828 4.79125 4.81455 4.88510 4.99068 5.08285 5.22848 5.28392 5.33457 5.37841 5.42206 5.48857 5.53399 5.56451 5.60358 5.63264 5.65257 5.74743 5.75903 5.79755 5.84253 5.89796 5.90850 5.96708 5.99204 6.05171 6.10760 6.15839 6.19805 6.26587 6.35756 6.41828 6.50744 6.57171 6.67653 6.87105 7.00361 7.30349 7.33436 7.62116 7.94529 8.08895 8.67912 9.04032 9.57956 11.09029 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.029099 B = 0.003046 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.004020 B = 9191.562228 C = 9604.187277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.119 4.119 4 C -0.117 4.117 5 C -0.084 4.084 6 H 0.071 0.929 7 C -0.111 4.111 8 C -0.150 4.150 9 C 0.059 3.941 10 N -0.536 5.536 11 C 0.057 3.943 12 C 0.068 3.932 13 N -0.530 5.530 14 C 0.163 3.837 15 C -0.508 4.508 16 H 0.080 0.920 17 C 0.068 3.932 18 N -0.901 5.901 19 Si 0.875 3.125 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.268 1.268 23 C 0.054 3.946 24 C 0.062 3.938 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.046 0.954 37 H 0.055 0.945 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.029 0.971 41 H 0.038 0.962 42 H 0.073 0.927 43 H 0.028 0.972 44 H 0.090 0.910 45 H -0.011 1.011 46 H 0.023 0.977 47 H 0.263 0.737 48 H 0.030 0.970 49 H 0.070 0.930 50 H 0.068 0.932 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.288 -19.060 11.968 24.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.155 4.155 5 C -0.103 4.103 6 H 0.089 0.911 7 C -0.149 4.149 8 C -0.207 4.207 9 C -0.069 4.069 10 N -0.260 5.260 11 C -0.071 4.071 12 C -0.061 4.061 13 N -0.254 5.254 14 C 0.036 3.964 15 C -0.546 4.546 16 H 0.098 0.902 17 C -0.134 4.134 18 N -0.540 5.540 19 Si 0.702 3.298 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.193 1.193 23 C -0.075 4.075 24 C -0.066 4.066 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.047 0.953 41 H 0.056 0.944 42 H 0.091 0.909 43 H 0.046 0.954 44 H 0.108 0.892 45 H 0.006 0.994 46 H 0.041 0.959 47 H 0.073 0.927 48 H 0.048 0.952 49 H 0.088 0.912 50 H 0.087 0.913 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.253 -18.883 11.853 24.540 hybrid contribution 0.547 0.696 0.547 1.041 sum -9.706 -18.187 12.401 24.057 Atomic orbital electron populations 1.21782 0.96099 1.01362 1.01816 1.21539 0.95677 0.97274 1.01762 1.21637 0.95507 0.96338 1.02216 1.21676 0.95356 0.96581 1.01870 1.21194 0.94733 0.95602 0.98785 0.91105 1.21424 0.99683 1.00280 0.93503 1.21831 1.01309 0.99660 0.97939 1.22164 0.95190 0.89406 1.00170 1.62159 1.10910 1.15876 1.37097 1.22270 0.99384 0.95611 0.89865 1.22017 0.88386 0.93880 1.01793 1.62099 1.10214 1.20064 1.33067 1.20148 0.94847 0.83731 0.97640 1.21032 1.39500 0.97916 0.96200 0.90212 1.24902 0.95609 0.97683 0.95182 1.69895 1.48038 1.16475 1.19613 0.86859 0.80271 0.79965 0.82658 1.20181 1.21221 1.19258 1.22105 0.99518 0.93570 0.92264 1.22109 0.87245 0.97176 1.00078 0.93017 0.92824 0.92759 0.92231 0.92270 0.91721 0.92126 0.92416 0.91639 0.92851 0.90562 0.93453 0.92576 0.93172 0.90990 0.95311 0.94405 0.90892 0.95369 0.89176 0.99362 0.95898 0.92691 0.95164 0.91156 0.91333 0.94374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.12 -0.90 5.93 -26.73 -0.16 -1.06 16 3 C -0.12 -0.96 4.97 -26.73 -0.13 -1.09 16 4 C -0.12 -1.00 4.36 -26.73 -0.12 -1.12 16 5 C -0.08 -0.86 2.06 -90.62 -0.19 -1.05 16 6 H 0.07 0.80 6.36 -51.92 -0.33 0.47 16 7 C -0.11 -1.15 5.28 -26.73 -0.14 -1.29 16 8 C -0.15 -1.39 9.11 37.16 0.34 -1.05 16 9 C 0.06 0.68 4.20 -3.82 -0.02 0.66 16 10 N -0.54 -7.62 4.00 -234.46 -0.94 -8.56 16 11 C 0.06 0.90 5.41 -3.77 -0.02 0.88 16 12 C 0.07 1.33 5.43 -3.77 -0.02 1.31 16 13 N -0.53 -11.35 4.70 -235.91 -1.11 -12.46 16 14 C 0.16 4.02 3.79 -4.98 -0.02 4.00 16 15 C -0.51 -14.56 9.03 -34.44 -0.31 -14.87 16 16 H 0.08 2.48 7.38 -52.49 -0.39 2.09 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 18 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 19 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 23 C 0.05 0.96 5.61 -3.76 -0.02 0.94 16 24 C 0.06 0.92 5.61 -3.76 -0.02 0.90 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.53 6.68 -51.93 -0.35 0.18 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.54 6.20 -51.93 -0.32 0.22 16 34 H 0.05 0.52 6.81 -51.92 -0.35 0.17 16 35 H 0.08 0.96 7.56 -51.93 -0.39 0.56 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.54 6.25 -51.93 -0.32 0.22 16 38 H 0.05 0.42 6.59 -51.93 -0.34 0.07 16 39 H 0.07 0.78 6.19 -51.93 -0.32 0.46 16 40 H 0.03 0.35 8.12 -51.93 -0.42 -0.08 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 1.04 6.28 -51.93 -0.33 0.72 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.09 1.96 6.79 -51.92 -0.35 1.61 16 45 H -0.01 -0.29 7.18 -51.93 -0.37 -0.66 16 46 H 0.02 0.57 7.46 -51.93 -0.39 0.18 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 48 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 50 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 51 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 375.02 15.07 5.65 5.65 Total: -1.00 -29.78 375.02 -10.90 -40.68 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -10.06 Total: -3.77 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -0.56 Total: -11.61 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: -1.27 Total: -48.00 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.78 -10.90 -40.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612823090.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.655 kcal (2) G-P(sol) polarization free energy of solvation -29.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds