Wall clock time and date at job start Tue Mar 31 2020 05:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46896 * 110.99720 * 2 1 4 4 C 1.46899 * 111.00186 * 123.95707 * 2 1 3 5 5 C 1.53001 * 109.47184 * 76.64649 * 4 2 1 6 6 O 1.42897 * 109.52328 * 292.88088 * 5 4 2 7 7 C 1.53111 * 109.52088 * 53.00901 * 5 4 2 8 8 C 1.53040 * 109.27808 * 177.62137 * 7 5 4 9 9 N 1.46853 * 109.51160 * 300.82576 * 8 7 5 10 10 C 1.46905 * 110.99427 * 185.83153 * 9 8 7 11 11 C 1.53001 * 109.46363 * 163.44018 * 10 9 8 12 12 C 1.50700 * 115.55480 * 302.56713 * 11 10 9 13 13 H 1.07998 * 120.00115 * 144.44749 * 12 11 10 14 14 C 1.37881 * 119.99566 * 324.44705 * 12 11 10 15 15 N 1.31511 * 120.00427 * 357.91928 * 14 12 11 16 16 Si 1.86802 * 119.99690 * 177.91863 * 14 12 11 17 17 H 1.48498 * 109.47181 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46891 * 120.00019 * 16 14 12 19 19 H 1.48497 * 109.47291 * 239.99982 * 16 14 12 20 20 C 1.53003 * 117.49592 * 156.89847 * 11 10 9 21 21 C 1.53002 * 117.49983 * 88.24038 * 11 10 9 22 22 C 1.46820 * 111.20767 * 61.75045 * 9 8 7 23 23 C 1.53044 * 109.51626 * 298.24316 * 22 9 8 24 24 H 1.09000 * 109.46953 * 287.46234 * 1 2 3 25 25 H 1.08996 * 109.47151 * 47.47033 * 1 2 3 26 26 H 1.09001 * 109.46828 * 167.46812 * 1 2 3 27 27 H 1.08999 * 109.47408 * 183.95927 * 3 2 1 28 28 H 1.09005 * 109.47407 * 303.95527 * 3 2 1 29 29 H 1.09000 * 109.47213 * 63.95489 * 3 2 1 30 30 H 1.08998 * 109.46709 * 316.64696 * 4 2 1 31 31 H 1.09003 * 109.46681 * 196.64969 * 4 2 1 32 32 H 0.96704 * 113.99977 * 300.12694 * 6 5 4 33 33 H 1.08999 * 109.50926 * 57.67900 * 7 5 4 34 34 H 1.09001 * 109.50412 * 297.56096 * 7 5 4 35 35 H 1.09004 * 109.46004 * 60.83383 * 8 7 5 36 36 H 1.08996 * 109.46256 * 180.81737 * 8 7 5 37 37 H 1.09000 * 109.47137 * 283.43729 * 10 9 8 38 38 H 1.09002 * 109.47203 * 43.44589 * 10 9 8 39 39 H 0.96994 * 120.00291 * 185.01435 * 15 14 12 40 40 H 1.09006 * 117.49596 * 0.02562 * 20 11 10 41 41 H 1.09000 * 117.50269 * 145.01983 * 20 11 10 42 42 H 1.08995 * 117.50406 * 214.97638 * 21 11 10 43 43 H 1.09001 * 117.49593 * 359.97438 * 21 11 10 44 44 H 1.09004 * 109.46327 * 178.23361 * 22 9 8 45 45 H 1.08999 * 109.46481 * 58.25512 * 22 9 8 46 46 H 1.09000 * 109.50593 * 299.24231 * 23 22 9 47 47 H 1.08995 * 109.50090 * 179.12545 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.8673 -2.2628 0.8475 6 8 0.4856 -2.6255 0.8108 7 6 2.5156 -2.5797 -0.5029 8 6 2.4369 -4.0863 -0.7600 9 7 3.1303 -4.8046 0.3170 10 6 3.1950 -6.2444 0.0328 11 6 4.2517 -6.8939 0.9286 12 6 5.6423 -6.3252 0.8110 13 1 6.2741 -6.2586 1.6843 14 6 6.1079 -5.8899 -0.4116 15 7 5.3539 -6.0087 -1.4826 16 14 7.8096 -5.1315 -0.5468 17 1 8.4513 -5.1133 0.7923 18 1 8.6374 -5.9363 -1.4809 19 1 7.6934 -3.7427 -1.0594 20 6 4.1226 -8.3942 1.1995 21 6 3.8040 -7.3861 2.3064 22 6 2.4962 -4.5532 1.6171 23 6 2.5768 -3.0605 1.9452 24 1 -0.3633 0.3084 0.9803 25 1 -0.3633 0.6946 -0.7573 26 1 -0.3633 -1.0032 -0.2230 27 1 3.0827 1.3433 -0.0710 28 1 1.5897 1.9164 -0.8524 29 1 1.7043 1.8723 0.9233 30 1 1.4281 -0.5199 2.0350 31 1 3.0449 -0.5141 1.2906 32 1 0.0113 -2.4518 1.6355 33 1 3.5597 -2.2672 -0.4877 34 1 1.9874 -2.0475 -1.2940 35 1 1.3921 -4.3957 -0.7888 36 1 2.9106 -4.3171 -1.7141 37 1 2.2234 -6.6976 0.2296 38 1 3.4620 -6.3967 -1.0130 39 1 5.7077 -5.7702 -2.3537 40 1 3.2852 -8.9186 0.7391 41 1 5.0435 -8.9699 1.2930 42 1 4.5153 -7.2989 3.1277 43 1 2.7568 -7.2467 2.5748 44 1 3.0128 -5.1232 2.3894 45 1 1.4512 -4.8603 1.5770 46 1 3.6219 -2.7556 1.9990 47 1 2.0923 -2.8719 2.9032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710671733.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:22 Heat of formation + Delta-G solvation = -6.194112 kcal Electronic energy + Delta-G solvation = -24393.825767 eV Core-core repulsion = 21191.723055 eV Total energy + Delta-G solvation = -3202.102712 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.52980 -37.37718 -36.12354 -34.70067 -31.97243 -31.44718 -30.15058 -27.76130 -27.52013 -25.46524 -24.41709 -22.77105 -22.12909 -21.05347 -20.67060 -19.20340 -18.77305 -16.14600 -16.10349 -15.56192 -15.37798 -14.98010 -14.58522 -14.35895 -13.92970 -13.81355 -13.60787 -13.25453 -12.98212 -12.56927 -12.44613 -12.19884 -11.90744 -11.71593 -11.64969 -11.42263 -11.28352 -11.05723 -10.89608 -10.78284 -10.54187 -10.51348 -10.34540 -10.31264 -9.87636 -9.63905 -9.44062 -9.09234 -8.76520 -8.51785 -8.28574 -7.93718 -6.91765 -5.76386 -3.84623 3.38118 3.46681 3.49743 3.92194 4.49410 4.53506 4.95379 4.96963 5.04698 5.14502 5.27558 5.30630 5.35662 5.46958 5.51443 5.66458 5.71433 5.74634 5.78392 5.89518 6.10343 6.11718 6.14151 6.22787 6.24733 6.42017 6.49708 6.57767 6.67155 6.68584 6.73549 6.77108 6.82970 6.93894 7.00664 7.03672 7.04311 7.07532 7.35365 7.43972 7.75291 7.89680 8.16903 8.41193 8.46603 8.70425 9.10702 9.76074 11.21049 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018697 B = 0.005656 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.243148 B = 4949.227831 C = 5789.213636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.536 5.536 3 C 0.023 3.977 4 C 0.032 3.968 5 C 0.141 3.859 6 O -0.551 6.551 7 C -0.082 4.082 8 C 0.066 3.934 9 N -0.496 5.496 10 C 0.101 3.899 11 C 0.069 3.931 12 C -0.466 4.466 13 H 0.052 0.948 14 C 0.085 3.915 15 N -0.876 5.876 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.284 1.284 20 C -0.210 4.210 21 C -0.219 4.219 22 C 0.063 3.937 23 C -0.137 4.137 24 H 0.016 0.984 25 H 0.057 0.943 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.019 0.981 30 H 0.032 0.968 31 H 0.080 0.920 32 H 0.362 0.638 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.018 0.982 36 H 0.074 0.926 37 H -0.020 1.020 38 H 0.124 0.876 39 H 0.255 0.745 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.078 0.922 45 H 0.016 0.984 46 H 0.079 0.921 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.025 11.018 3.699 14.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.259 5.259 3 C -0.125 4.125 4 C -0.096 4.096 5 C 0.100 3.900 6 O -0.356 6.356 7 C -0.120 4.120 8 C -0.062 4.062 9 N -0.219 5.219 10 C -0.026 4.026 11 C 0.068 3.932 12 C -0.504 4.504 13 H 0.070 0.930 14 C -0.117 4.117 15 N -0.515 5.515 16 Si 0.718 3.282 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.210 1.210 20 C -0.249 4.249 21 C -0.256 4.256 22 C -0.066 4.066 23 C -0.176 4.176 24 H 0.035 0.965 25 H 0.076 0.924 26 H 0.110 0.890 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.037 0.963 30 H 0.051 0.949 31 H 0.098 0.902 32 H 0.207 0.793 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.036 0.964 36 H 0.092 0.908 37 H -0.002 1.002 38 H 0.142 0.858 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.034 0.966 46 H 0.097 0.903 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.233 10.916 2.467 13.893 hybrid contribution -0.336 0.694 1.444 1.637 sum -8.569 11.609 3.911 14.950 Atomic orbital electron populations 1.22621 0.87140 1.04008 0.99072 1.61899 1.08221 1.12844 1.42941 1.22432 1.00876 0.89300 0.99925 1.22901 1.00526 0.95341 0.90860 1.21334 0.81185 0.90011 0.97445 1.86603 1.22087 1.87440 1.39453 1.21369 0.99909 0.96331 0.94390 1.21923 0.95347 0.92910 0.96058 1.61579 1.50345 1.10487 0.99489 1.21883 0.91902 0.84431 1.04365 1.18998 0.95357 0.89328 0.89485 1.20345 0.96408 1.39379 0.94237 0.92957 1.24745 0.96613 0.94441 0.95887 1.69712 1.34625 1.48925 0.98209 0.86597 0.84672 0.79160 0.77733 1.20177 1.21505 1.21044 1.22984 1.00438 0.96446 1.05037 1.22926 0.98562 1.09536 0.94615 1.21969 0.95883 0.94116 0.94593 1.22214 1.01647 0.97214 0.96534 0.96516 0.92420 0.88955 0.91394 0.91589 0.96255 0.94944 0.90175 0.79267 0.90725 0.90822 0.96404 0.90779 1.00218 0.85832 0.93447 0.92072 0.90598 0.91045 0.91975 0.90369 0.96640 0.90264 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.15 60.07 0.55 0.76 16 2 N -0.54 -6.58 3.94 -251.26 -0.99 -7.57 16 3 C 0.02 0.24 9.49 60.06 0.57 0.81 16 4 C 0.03 0.40 4.34 -3.82 -0.02 0.38 16 5 C 0.14 2.06 0.75 -90.50 -0.07 1.99 16 6 O -0.55 -7.70 9.22 -35.23 -0.32 -8.03 16 7 C -0.08 -1.42 4.82 -26.65 -0.13 -1.55 16 8 C 0.07 1.33 5.31 -3.83 -0.02 1.31 16 9 N -0.50 -10.83 4.36 -234.67 -1.02 -11.85 16 10 C 0.10 2.43 4.02 -3.82 -0.02 2.41 16 11 C 0.07 1.72 1.69 -155.66 -0.26 1.45 16 12 C -0.47 -12.64 8.81 -34.44 -0.30 -12.95 16 13 H 0.05 1.45 7.81 -52.49 -0.41 1.04 16 14 C 0.09 2.29 5.35 -17.82 -0.10 2.19 16 15 N -0.88 -23.75 10.40 55.43 0.58 -23.17 16 16 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 C -0.21 -4.87 9.96 -26.69 -0.27 -5.14 16 21 C -0.22 -4.86 8.27 -26.69 -0.22 -5.08 16 22 C 0.06 1.21 5.09 -3.84 -0.02 1.19 16 23 C -0.14 -2.16 5.08 -26.65 -0.14 -2.30 16 24 H 0.02 0.17 7.89 -51.93 -0.41 -0.24 16 25 H 0.06 0.57 7.97 -51.93 -0.41 0.16 16 26 H 0.09 1.13 6.03 -51.93 -0.31 0.82 16 27 H 0.07 0.69 8.07 -51.93 -0.42 0.28 16 28 H 0.07 0.61 8.03 -51.93 -0.42 0.20 16 29 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.03 0.37 7.82 -51.93 -0.41 -0.04 16 31 H 0.08 1.02 7.87 -51.93 -0.41 0.61 16 32 H 0.36 3.80 9.05 45.56 0.41 4.21 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.07 1.26 7.52 -51.93 -0.39 0.87 16 35 H 0.02 0.37 7.76 -51.93 -0.40 -0.04 16 36 H 0.07 1.61 7.95 -51.93 -0.41 1.20 16 37 H -0.02 -0.48 8.01 -51.93 -0.42 -0.89 16 38 H 0.12 3.26 5.43 -51.93 -0.28 2.98 16 39 H 0.25 6.69 8.32 -40.82 -0.34 6.35 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 42 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 43 H 0.06 1.29 7.80 -51.93 -0.41 0.88 16 44 H 0.08 1.60 5.66 -51.93 -0.29 1.30 16 45 H 0.02 0.30 7.76 -51.93 -0.40 -0.10 16 46 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 354.63 15.07 5.34 5.34 Total: -1.00 -28.00 354.63 -9.76 -37.75 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -7.89 Total: 5.78 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -0.43 Total: -14.51 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: -1.44 Total: -42.59 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.32 Total: -8.03 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.00 -9.76 -37.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710671733.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.560 kcal (2) G-P(sol) polarization free energy of solvation -27.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds