Wall clock time and date at job start Tue Mar 31 2020 05:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46892 * 111.00165 * 2 1 4 4 C 1.52997 * 109.47495 * 293.95663 * 3 2 1 5 5 C 1.53002 * 109.47469 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.46817 * 64.99892 * 5 4 3 7 7 C 1.52999 * 109.47317 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.47159 * 300.00546 * 7 6 5 9 9 C 1.52997 * 109.47452 * 59.99536 * 8 7 6 10 10 C 1.53000 * 109.47233 * 184.99697 * 5 4 3 11 11 C 1.46890 * 110.99931 * 123.95715 * 2 1 3 12 12 C 1.50701 * 109.47286 * 66.04411 * 11 2 1 13 13 O 1.21276 * 119.99898 * 359.97438 * 12 11 2 14 14 N 1.34781 * 120.00303 * 179.97438 * 12 11 2 15 15 C 1.46502 * 120.00064 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47118 * 179.97438 * 15 14 12 17 17 H 1.08010 * 119.99939 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00481 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99380 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00506 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47121 * 59.99718 * 20 18 16 22 22 H 1.48496 * 109.47324 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47259 * 300.00206 * 20 18 16 24 24 H 1.09001 * 109.46882 * 59.99241 * 1 2 3 25 25 H 1.08993 * 109.47192 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46838 * 299.99728 * 1 2 3 27 27 H 1.08997 * 109.47469 * 173.95187 * 3 2 1 28 28 H 1.09006 * 109.47354 * 53.95784 * 3 2 1 29 29 H 1.09008 * 109.47149 * 59.99815 * 4 3 2 30 30 H 1.08997 * 109.47163 * 299.99885 * 4 3 2 31 31 H 1.09002 * 109.47070 * 305.00072 * 5 4 3 32 32 H 1.08996 * 109.47853 * 300.00202 * 6 5 4 33 33 H 1.09002 * 109.47153 * 60.00231 * 6 5 4 34 34 H 1.09000 * 109.47486 * 180.02562 * 7 6 5 35 35 H 1.09002 * 109.46716 * 60.00091 * 7 6 5 36 36 H 1.09002 * 109.46935 * 299.99411 * 8 7 6 37 37 H 1.09001 * 109.46812 * 179.97438 * 8 7 6 38 38 H 1.08993 * 109.47194 * 179.97438 * 9 8 7 39 39 H 1.09002 * 109.46695 * 59.99734 * 9 8 7 40 40 H 1.08992 * 109.47399 * 300.00166 * 10 5 4 41 41 H 1.09004 * 109.46724 * 60.00652 * 10 5 4 42 42 H 1.08998 * 109.47234 * 186.04511 * 11 2 1 43 43 H 1.09000 * 109.47634 * 306.04391 * 11 2 1 44 44 H 0.96994 * 119.99733 * 0.02562 * 14 12 11 45 45 H 1.08998 * 109.47178 * 300.00176 * 15 14 12 46 46 H 1.09000 * 109.46951 * 60.00145 * 15 14 12 47 47 H 0.97005 * 119.99622 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6315 2.0575 -1.3182 5 6 2.1794 3.4860 -1.3179 6 6 3.7086 3.4458 -1.2913 7 6 4.2565 4.8743 -1.2917 8 6 3.7872 5.6002 -2.5542 9 6 2.2580 5.6405 -2.5808 10 6 1.7102 4.2124 -2.5801 11 6 1.9955 -0.7660 1.1375 12 6 1.6369 -2.2204 0.9727 13 8 1.0047 -2.5830 0.0034 14 7 2.0188 -3.1183 1.9026 15 6 1.6707 -4.5322 1.7421 16 6 2.2117 -5.3183 2.9084 17 1 2.7597 -4.8148 3.6913 18 6 2.0073 -6.6801 2.9763 19 7 1.3396 -7.2930 2.0233 20 14 2.6772 -7.6543 4.4225 21 1 2.0850 -7.1393 5.6832 22 1 2.3245 -9.0876 4.2598 23 1 4.1543 -7.5104 4.4746 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.0798 1.3443 0.1083 28 1 1.5612 1.9273 0.8310 29 1 0.5472 2.0845 -1.4264 30 1 2.0658 1.5016 -2.1491 31 1 1.8144 4.0149 -0.4374 32 1 4.0429 2.9283 -0.3922 33 1 4.0735 2.9169 -2.1718 34 1 5.3460 4.8456 -1.2732 35 1 3.8916 5.4035 -0.4114 36 1 4.1521 5.0709 -3.4344 37 1 4.1772 6.6181 -2.5542 38 1 1.9238 6.1580 -3.4799 39 1 1.8932 6.1697 -1.7005 40 1 2.0751 3.6836 -3.4605 41 1 0.6207 4.2411 -2.5990 42 1 3.0797 -0.6612 1.1755 43 1 1.5612 -0.3873 2.0627 44 1 2.5242 -2.8282 2.6780 45 1 0.5865 -4.6375 1.7041 46 1 2.1051 -4.9105 0.8167 47 1 1.1960 -8.2512 2.0709 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725810915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:18 Heat of formation + Delta-G solvation = -69.126078 kcal Electronic energy + Delta-G solvation = -22044.473991 eV Core-core repulsion = 18839.642345 eV Total energy + Delta-G solvation = -3204.831647 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.40753 -38.82942 -36.72390 -34.12045 -33.08934 -32.30109 -31.03304 -29.09966 -27.94202 -26.76235 -24.89354 -23.00097 -22.56109 -21.62318 -20.45842 -19.97253 -19.56813 -17.05758 -16.14762 -15.73798 -15.56217 -15.33609 -15.00314 -14.55851 -14.51227 -14.24165 -14.11535 -13.98867 -13.52250 -13.17215 -12.64335 -12.53661 -12.34749 -12.10020 -11.99333 -11.93829 -11.78279 -11.45214 -11.37258 -11.17853 -11.12203 -10.97912 -10.83555 -10.80907 -10.65027 -10.29647 -10.25419 -10.10544 -9.39284 -8.95561 -8.70922 -8.14852 -7.81836 -6.15062 -4.21999 3.25907 3.30624 3.32144 3.43545 3.72168 4.28075 4.41752 4.43703 4.48126 4.55509 4.87130 4.88566 5.06493 5.16358 5.20679 5.22510 5.24055 5.27223 5.32125 5.39300 5.42265 5.48053 5.53433 5.63251 5.68515 5.71359 5.74964 5.79325 5.83569 5.89757 5.91593 5.96636 6.01186 6.09702 6.17683 6.31348 6.39415 7.05032 7.20104 7.35699 7.48978 7.54843 7.69947 7.99322 8.67090 8.81416 9.16911 9.44786 10.95076 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042705 B = 0.002363 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.504673 B =11847.941344 C =12234.271637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.523 5.523 3 C 0.055 3.945 4 C -0.111 4.111 5 C -0.085 4.085 6 C -0.117 4.117 7 C -0.120 4.120 8 C -0.120 4.120 9 C -0.119 4.119 10 C -0.114 4.114 11 C 0.035 3.965 12 C 0.499 3.501 13 O -0.539 6.539 14 N -0.716 5.716 15 C 0.252 3.748 16 C -0.544 4.544 17 H 0.062 0.938 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.275 1.275 24 H 0.066 0.934 25 H 0.091 0.909 26 H 0.016 0.984 27 H 0.074 0.926 28 H 0.029 0.971 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.097 0.903 43 H 0.056 0.944 44 H 0.389 0.611 45 H 0.025 0.975 46 H 0.026 0.974 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.385 25.785 -5.196 26.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.247 5.247 3 C -0.073 4.073 4 C -0.149 4.149 5 C -0.104 4.104 6 C -0.154 4.154 7 C -0.158 4.158 8 C -0.158 4.158 9 C -0.157 4.157 10 C -0.152 4.152 11 C -0.096 4.096 12 C 0.283 3.717 13 O -0.417 6.417 14 N -0.365 5.365 15 C 0.131 3.869 16 C -0.582 4.582 17 H 0.080 0.920 18 C -0.141 4.141 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 H 0.084 0.916 25 H 0.109 0.891 26 H 0.034 0.966 27 H 0.093 0.907 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.115 0.885 43 H 0.074 0.926 44 H 0.221 0.779 45 H 0.043 0.957 46 H 0.044 0.956 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.004 25.060 -6.389 26.036 hybrid contribution 0.336 -0.087 1.941 1.972 sum 3.341 24.973 -4.448 25.585 Atomic orbital electron populations 1.22587 0.86733 1.04143 0.99470 1.61611 1.08773 1.12370 1.41921 1.22219 1.00105 0.88042 0.96932 1.21634 1.01028 0.94306 0.97934 1.21140 0.95454 0.95615 0.98162 1.21649 0.95085 0.96413 1.02258 1.21543 1.00083 0.96207 0.97929 1.21542 0.95825 1.00060 0.98339 1.21521 0.95630 0.96983 1.01556 1.21563 1.00176 0.95386 0.98025 1.22018 1.01474 0.93194 0.92937 1.20312 0.80638 0.87270 0.83519 1.90621 1.40131 1.80547 1.30355 1.46458 1.55787 1.10519 1.23772 1.19067 0.96410 0.74068 0.97358 1.21198 1.36817 0.92988 1.07188 0.91989 1.24960 0.94976 0.97588 0.96553 1.69971 1.39482 1.10200 1.32622 0.86471 0.79345 0.78841 0.82214 1.20104 1.21080 1.20065 0.91571 0.89065 0.96588 0.90736 0.95252 0.91831 0.90914 0.91494 0.91761 0.91796 0.92196 0.92206 0.92040 0.92395 0.92256 0.92196 0.91869 0.92103 0.88533 0.92626 0.77872 0.95669 0.95562 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 8.96 60.07 0.54 0.81 16 2 N -0.52 -7.64 4.50 -244.38 -1.10 -8.74 16 3 C 0.05 0.60 4.71 -3.83 -0.02 0.59 16 4 C -0.11 -1.10 4.61 -26.73 -0.12 -1.22 16 5 C -0.08 -0.68 2.19 -90.62 -0.20 -0.88 16 6 C -0.12 -0.91 4.96 -26.73 -0.13 -1.05 16 7 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 8 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 9 C -0.12 -0.80 5.92 -26.76 -0.16 -0.96 16 10 C -0.11 -0.86 5.20 -26.76 -0.14 -1.00 16 11 C 0.04 0.52 5.45 -4.98 -0.03 0.49 16 12 C 0.50 10.09 7.52 -10.98 -0.08 10.01 16 13 O -0.54 -13.08 14.33 5.56 0.08 -13.00 16 14 N -0.72 -15.21 5.55 -61.47 -0.34 -15.55 16 15 C 0.25 6.74 5.43 -5.19 -0.03 6.71 16 16 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 17 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 20 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H 0.07 0.86 6.47 -51.93 -0.34 0.52 16 25 H 0.09 1.63 5.82 -51.93 -0.30 1.33 16 26 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 27 H 0.07 0.77 6.36 -51.93 -0.33 0.44 16 28 H 0.03 0.31 8.12 -51.93 -0.42 -0.12 16 29 H 0.06 0.64 6.55 -51.92 -0.34 0.30 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.10 1.23 7.93 -51.93 -0.41 0.82 16 43 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 44 H 0.39 7.03 8.32 -40.82 -0.34 6.69 16 45 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 364.21 15.07 5.49 5.49 Total: -1.00 -31.57 364.21 -9.96 -41.52 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -8.70 Total: 1.86 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -1.10 Total: -1.96 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.70 Total: -49.83 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -13.00 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.57 -9.96 -41.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725810915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.602 kcal (2) G-P(sol) polarization free energy of solvation -31.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds