Wall clock time and date at job start Tue Mar 31 2020 05:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47201 * 2 1 4 4 C 1.46496 * 119.99896 * 269.99926 * 3 2 1 5 5 C 1.50705 * 109.47066 * 269.99622 * 4 3 2 6 6 H 1.08001 * 119.99987 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00127 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00059 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00144 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47035 * 89.99867 * 9 7 5 11 11 H 1.48496 * 109.47390 * 210.00116 * 9 7 5 12 12 H 1.48496 * 109.47004 * 330.00404 * 9 7 5 13 13 C 1.34779 * 120.00050 * 89.99866 * 3 2 1 14 14 O 1.21273 * 120.00093 * 180.02562 * 13 3 2 15 15 C 1.50706 * 119.99767 * 359.97438 * 13 3 2 16 16 C 1.53000 * 109.46735 * 180.02562 * 15 13 3 17 17 C 1.52997 * 109.47060 * 180.02562 * 16 15 13 18 18 C 1.52992 * 109.47482 * 180.02562 * 17 16 15 19 19 N 1.46901 * 109.47859 * 179.97438 * 18 17 16 20 20 C 1.48533 * 110.99670 * 52.60024 * 19 18 17 21 21 C 1.54936 * 103.22827 * 159.72645 * 20 19 18 22 22 C 1.54602 * 102.91755 * 322.58844 * 21 20 19 23 23 C 1.47895 * 111.00585 * 169.99973 * 19 18 17 24 24 H 1.08992 * 109.47078 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47448 * 300.00222 * 1 2 3 26 26 H 1.09001 * 109.46659 * 60.00103 * 1 2 3 27 27 H 1.08996 * 109.47448 * 239.99777 * 2 1 3 28 28 H 1.09003 * 109.47167 * 119.99786 * 2 1 3 29 29 H 1.08998 * 109.47205 * 29.99486 * 4 3 2 30 30 H 1.08997 * 109.47416 * 150.00347 * 4 3 2 31 31 H 0.97001 * 120.00292 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.46797 * 60.00350 * 15 13 3 33 33 H 1.08992 * 109.47518 * 300.00347 * 15 13 3 34 34 H 1.09002 * 109.47398 * 300.00410 * 16 15 13 35 35 H 1.09001 * 109.47194 * 60.00591 * 16 15 13 36 36 H 1.09002 * 109.47153 * 300.00319 * 17 16 15 37 37 H 1.08998 * 109.47533 * 59.99948 * 17 16 15 38 38 H 1.09002 * 109.47103 * 300.00247 * 18 17 16 39 39 H 1.09001 * 109.47066 * 60.00169 * 18 17 16 40 40 H 1.09002 * 110.67270 * 278.16471 * 20 19 18 41 41 H 1.08998 * 110.66667 * 41.29259 * 20 19 18 42 42 H 1.09002 * 110.72666 * 204.23420 * 21 20 19 43 43 H 1.08998 * 110.72369 * 80.94172 * 21 20 19 44 44 H 1.09001 * 110.30688 * 263.03605 * 22 21 20 45 45 H 1.08996 * 110.30747 * 140.87557 * 22 21 20 46 46 H 1.08994 * 109.91810 * 333.51090 * 23 19 18 47 47 H 1.08999 * 109.91451 * 94.60787 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2303 -1.0960 7 6 4.1492 2.3896 -2.8778 8 7 3.3493 3.1256 -3.6180 9 14 5.9133 2.0955 -3.4174 10 1 5.9762 0.8742 -4.2599 11 1 6.3925 3.2625 -4.2007 12 1 6.7736 1.9158 -2.2204 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9912 1.3064 2.4723 16 6 2.3221 2.2440 3.6352 17 6 2.0672 1.5227 4.9603 18 6 2.3974 2.4604 6.1231 19 7 2.1521 1.7682 7.3954 20 6 2.8593 0.4627 7.4361 21 6 2.9353 0.1477 8.9512 22 6 3.1837 1.5376 9.5811 23 6 2.6813 2.5491 8.5345 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.5818 1.6876 -2.0284 30 1 2.0957 3.1410 -1.1384 31 1 3.6751 3.5155 -4.4443 32 1 2.6211 0.4187 2.5303 33 1 0.9432 1.0126 2.5299 34 1 3.3701 2.5382 3.5779 35 1 1.6919 3.1314 3.5771 36 1 1.0193 1.2282 5.0178 37 1 2.6976 0.6355 5.0182 38 1 3.4452 2.7554 6.0658 39 1 1.7666 3.3474 6.0651 40 1 2.2857 -0.3021 6.9124 41 1 3.8590 0.5534 7.0114 42 1 3.7653 -0.5261 9.1639 43 1 1.9945 -0.2736 9.3052 44 1 4.2476 1.6835 9.7681 45 1 2.6186 1.6394 10.5075 46 1 3.5058 3.1794 8.2014 47 1 1.8906 3.1668 8.9604 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729921520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:15 Heat of formation + Delta-G solvation = -54.891903 kcal Electronic energy + Delta-G solvation = -22261.970368 eV Core-core repulsion = 19057.755962 eV Total energy + Delta-G solvation = -3204.214407 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.33001 -38.95919 -35.47555 -34.90913 -32.82759 -31.97943 -30.04838 -29.29045 -28.54702 -26.78514 -24.18600 -22.97715 -22.54090 -21.48429 -20.95970 -20.33323 -18.15615 -16.54578 -16.33122 -16.15503 -16.02097 -15.67841 -15.30318 -14.56861 -14.27074 -14.21382 -13.51582 -13.36162 -13.19786 -12.97995 -12.87793 -12.42589 -12.02486 -11.98470 -11.95286 -11.67999 -11.52957 -11.44292 -11.25783 -11.17722 -11.03869 -10.89705 -10.84976 -10.79947 -10.70606 -10.47606 -10.37954 -10.10063 -9.60268 -8.80184 -8.63277 -8.41434 -7.60342 -6.01971 -4.06531 3.30787 3.37316 3.41297 3.52913 3.73638 4.03097 4.36836 4.42528 4.46832 4.66904 4.91418 4.97875 5.01556 5.08718 5.22619 5.31858 5.33870 5.35725 5.41128 5.47768 5.48521 5.53084 5.54386 5.66706 5.69825 5.73156 5.76327 5.79364 5.89032 5.89822 5.97440 5.99541 6.11557 6.27199 6.37786 6.51004 6.53722 6.67178 6.84577 7.12418 7.48979 7.60914 7.95071 8.27131 8.50249 8.93786 9.17663 9.58591 11.06088 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022774 B = 0.002900 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.154930 B = 9653.751300 C =10197.015086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.245 3.755 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.503 3.497 14 O -0.545 6.545 15 C -0.138 4.138 16 C -0.102 4.102 17 C -0.117 4.117 18 C 0.046 3.954 19 N -0.520 5.520 20 C 0.032 3.968 21 C -0.125 4.125 22 C -0.132 4.132 23 C 0.033 3.967 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.031 0.969 30 H 0.042 0.958 31 H 0.263 0.737 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.036 0.964 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.070 0.930 46 H 0.044 0.956 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.006 -7.809 22.012 23.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.332 5.332 4 C 0.126 3.874 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.290 3.710 14 O -0.423 6.423 15 C -0.179 4.179 16 C -0.140 4.140 17 C -0.155 4.155 18 C -0.082 4.082 19 N -0.244 5.244 20 C -0.095 4.095 21 C -0.163 4.163 22 C -0.170 4.170 23 C -0.095 4.095 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.062 0.938 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.362 -7.141 21.847 23.395 hybrid contribution 1.843 -0.061 -0.615 1.943 sum -2.519 -7.201 21.232 22.561 Atomic orbital electron populations 1.22218 0.96892 1.01319 1.02298 1.21391 0.93440 0.84314 1.02548 1.48278 1.63818 1.13223 1.07868 1.19244 0.96153 0.93648 0.78349 1.21445 0.96991 1.31719 1.06160 0.92558 1.24941 0.97831 0.94970 0.96447 1.69934 1.35682 1.33544 1.14302 0.86505 0.84749 0.77651 0.78563 1.20665 1.21097 1.19929 1.20409 0.78336 0.86974 0.85292 1.90653 1.45956 1.18283 1.87366 1.21703 1.02880 0.99745 0.93530 1.21275 1.02887 0.98212 0.91661 1.21665 1.02257 0.98241 0.93356 1.22345 0.99577 0.97616 0.88650 1.64826 1.53574 1.03344 1.02637 1.23256 0.97197 0.92613 0.96477 1.22496 1.02071 0.96738 0.95022 1.22399 1.01007 0.94927 0.98649 1.22874 0.98544 0.96145 0.91895 0.92258 0.93016 0.92139 0.90157 0.91721 0.95147 0.93981 0.92761 0.89792 0.89720 0.91386 0.91209 0.91177 0.92029 0.94538 0.90437 0.89825 0.93643 0.91167 0.90774 0.91622 0.91087 0.93758 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.24 37.16 0.38 -1.92 16 2 C 0.11 1.74 5.93 -4.04 -0.02 1.72 16 3 N -0.60 -12.88 2.46 -175.06 -0.43 -13.31 16 4 C 0.25 6.53 5.16 -5.19 -0.03 6.51 16 5 C -0.52 -15.11 9.39 -34.44 -0.32 -15.43 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 9 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.50 10.58 7.67 -10.98 -0.08 10.50 16 14 O -0.54 -13.95 15.56 5.56 0.09 -13.86 16 15 C -0.14 -2.04 4.25 -27.88 -0.12 -2.16 16 16 C -0.10 -1.41 4.50 -26.73 -0.12 -1.53 16 17 C -0.12 -1.27 4.87 -26.74 -0.13 -1.40 16 18 C 0.05 0.49 5.03 -3.83 -0.02 0.47 16 19 N -0.52 -5.24 5.40 -230.47 -1.24 -6.48 16 20 C 0.03 0.28 5.10 -1.90 -0.01 0.27 16 21 C -0.13 -0.91 7.06 -24.87 -0.18 -1.09 16 22 C -0.13 -0.94 6.93 -25.37 -0.18 -1.12 16 23 C 0.03 0.29 6.69 -2.76 -0.02 0.27 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.67 7.22 -51.93 -0.37 0.29 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 28 H 0.06 0.87 6.44 -51.93 -0.33 0.53 16 29 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 30 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.08 1.10 7.40 -51.93 -0.38 0.72 16 33 H 0.08 1.07 7.18 -51.93 -0.37 0.70 16 34 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 35 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.63 6.80 -51.93 -0.35 0.28 16 38 H 0.04 0.40 7.81 -51.93 -0.41 0.00 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 0.71 7.66 -51.93 -0.40 0.31 16 41 H 0.05 0.41 8.00 -51.93 -0.42 0.00 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.04 0.39 7.57 -51.93 -0.39 0.00 16 47 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 371.09 15.07 5.59 5.59 Total: -1.00 -33.14 371.09 -10.07 -43.21 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -8.85 Total: -2.75 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -0.94 Total: -3.26 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: -0.94 Total: -46.03 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.09 Total: -13.86 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.14 -10.07 -43.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729921520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.683 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds