Wall clock time and date at job start Tue Mar 31 2020 05:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34783 * 120.00138 * 2 1 4 4 O 1.21590 * 119.99935 * 180.02562 * 3 2 1 5 5 N 1.34779 * 119.99768 * 0.02562 * 3 2 1 6 6 C 1.46499 * 119.99872 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.46840 * 180.02562 * 6 5 3 8 8 C 1.50706 * 109.46735 * 180.02562 * 7 6 5 9 9 H 1.07996 * 119.99928 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99611 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99711 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 120.00219 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.46794 * 90.00022 * 12 10 8 14 14 H 1.48502 * 109.47140 * 210.00005 * 12 10 8 15 15 H 1.48501 * 109.46982 * 330.00118 * 12 10 8 16 16 C 1.46503 * 120.00413 * 180.02562 * 2 1 3 17 17 C 1.53018 * 109.47054 * 59.99457 * 16 2 1 18 18 C 1.52986 * 109.45802 * 164.04830 * 17 16 2 19 19 C 1.52987 * 109.51299 * 315.99360 * 18 17 16 20 20 C 1.53010 * 109.47104 * 112.93575 * 19 18 17 21 21 C 1.52997 * 109.42926 * 284.04297 * 20 19 18 22 22 C 1.52986 * 109.48730 * 75.96344 * 21 20 19 23 23 C 1.52999 * 109.50529 * 247.06146 * 22 21 20 24 24 H 1.08999 * 109.47474 * 89.99844 * 1 2 3 25 25 H 1.09007 * 109.47434 * 209.99927 * 1 2 3 26 26 H 1.09004 * 109.47368 * 330.00063 * 1 2 3 27 27 H 0.97000 * 119.99708 * 359.97438 * 5 3 2 28 28 H 1.09002 * 109.47391 * 59.99686 * 6 5 3 29 29 H 1.09001 * 109.46813 * 299.99742 * 6 5 3 30 30 H 1.09001 * 109.47194 * 299.99493 * 7 6 5 31 31 H 1.08992 * 109.47399 * 59.99666 * 7 6 5 32 32 H 0.97000 * 119.99684 * 179.97438 * 11 10 8 33 33 H 1.08991 * 109.47141 * 180.02562 * 16 2 1 34 34 H 1.08997 * 109.47066 * 284.04802 * 17 16 2 35 35 H 1.09001 * 109.47170 * 44.05737 * 17 16 2 36 36 H 1.09000 * 109.46813 * 195.97650 * 18 17 16 37 37 H 1.09005 * 109.45715 * 76.00086 * 18 17 16 38 38 H 1.09002 * 109.46945 * 352.93179 * 19 18 17 39 39 H 1.09000 * 109.46882 * 232.93174 * 19 18 17 40 40 H 1.08994 * 109.47432 * 164.05367 * 20 19 18 41 41 H 1.08995 * 109.48205 * 44.03553 * 20 19 18 42 42 H 1.09006 * 109.47058 * 315.95799 * 21 20 19 43 43 H 1.09000 * 109.46594 * 195.96974 * 21 20 19 44 44 H 1.09001 * 109.46310 * 127.05173 * 22 21 20 45 45 H 1.08996 * 109.45879 * 7.06487 * 22 21 20 46 46 H 1.09002 * 109.47227 * 284.01502 * 23 22 21 47 47 H 1.08996 * 109.47300 * 164.00840 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3548 1.1672 -0.0005 5 7 1.4649 2.3345 0.0005 6 6 2.1974 3.6032 0.0000 7 6 1.2032 4.7660 0.0014 8 6 1.9567 6.0712 0.0002 9 1 3.0367 6.0711 -0.0011 10 6 1.2673 7.2652 0.0006 11 7 1.9248 8.4042 0.0000 12 14 -0.6008 7.2652 0.0019 13 1 -1.0947 7.2653 1.4024 14 1 -1.0963 8.4777 -0.6978 15 1 -1.0962 6.0526 -0.6976 16 6 2.1975 -1.2687 -0.0006 17 6 1.8278 -2.0706 -1.2503 18 6 2.8561 -3.1829 -1.4647 19 6 4.2644 -2.6251 -1.2503 20 6 4.8798 -3.2601 -0.0016 21 6 4.2643 -2.6265 1.2476 22 6 2.8560 -3.1843 1.4618 23 6 1.8279 -2.0716 1.2485 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 0.4949 2.3344 0.0005 28 1 2.8235 3.6609 -0.8905 29 1 2.8247 3.6609 0.8895 30 1 0.5755 4.7085 -0.8879 31 1 0.5775 4.7081 0.8920 32 1 1.4398 9.2442 -0.0001 33 1 3.2691 -1.0695 0.0000 34 1 0.8388 -2.5100 -1.1205 35 1 1.8211 -1.4099 -2.1172 36 1 2.7685 -3.5675 -2.4809 37 1 2.6726 -3.9889 -0.7543 38 1 4.2111 -1.5443 -1.1197 39 1 4.8827 -2.8563 -2.1177 40 1 5.9567 -3.0920 -0.0016 41 1 4.6792 -4.3315 -0.0022 42 1 4.2111 -1.5455 1.1180 43 1 4.8827 -2.8583 2.1147 44 1 2.7686 -3.5698 2.4776 45 1 2.6724 -3.9896 0.7506 46 1 1.8214 -1.4116 2.1160 47 1 0.8388 -2.5107 1.1186 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753264451.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:11 Heat of formation + Delta-G solvation = -36.613998 kcal Electronic energy + Delta-G solvation = -23341.631005 eV Core-core repulsion = 20138.209188 eV Total energy + Delta-G solvation = -3203.421817 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.53436 -38.79190 -35.49639 -34.88258 -33.01989 -32.86841 -31.90290 -29.85566 -27.29261 -26.12444 -26.08451 -24.40109 -21.94552 -20.93070 -20.88001 -20.29236 -18.91393 -17.90638 -16.94811 -16.51910 -15.48398 -15.36222 -14.86083 -14.37980 -14.28130 -14.24645 -13.95434 -13.86420 -13.50400 -13.46296 -12.92781 -12.80199 -12.65580 -12.47229 -11.91965 -11.82055 -11.47931 -11.43293 -11.38392 -11.26763 -11.16706 -10.92435 -10.56403 -10.36659 -10.23262 -10.00969 -9.94721 -9.90540 -9.66414 -9.30162 -8.72105 -8.60004 -8.25470 -6.09339 -4.09095 2.88885 3.26065 3.33555 3.35009 3.53131 4.24123 4.39093 4.46097 4.66919 4.67320 4.83896 4.93443 4.98678 5.03397 5.06750 5.07822 5.20118 5.23618 5.36118 5.48256 5.50689 5.58525 5.67935 5.72407 5.75221 5.81461 5.86626 5.96875 5.98686 6.06634 6.07550 6.11508 6.18720 6.28058 6.36044 6.44460 6.60728 6.66546 6.86592 7.08823 7.27023 7.30547 7.69615 8.28004 8.47648 8.93404 8.96547 9.50914 11.03797 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031363 B = 0.003335 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.556172 B = 8394.774469 C = 8720.506563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.634 5.634 3 C 0.701 3.299 4 O -0.594 6.594 5 N -0.742 5.742 6 C 0.147 3.853 7 C -0.021 4.021 8 C -0.521 4.521 9 H 0.076 0.924 10 C 0.069 3.931 11 N -0.899 5.899 12 Si 0.882 3.118 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.266 1.266 16 C 0.134 3.866 17 C -0.127 4.127 18 C -0.122 4.122 19 C -0.136 4.136 20 C -0.116 4.116 21 C -0.136 4.136 22 C -0.122 4.122 23 C -0.128 4.128 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.391 0.609 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.021 0.979 31 H 0.016 0.984 32 H 0.264 0.736 33 H 0.129 0.871 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.036 -26.708 0.060 26.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.372 5.372 3 C 0.402 3.598 4 O -0.473 6.473 5 N -0.397 5.397 6 C 0.025 3.975 7 C -0.059 4.059 8 C -0.560 4.560 9 H 0.094 0.906 10 C -0.133 4.133 11 N -0.537 5.537 12 Si 0.709 3.291 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.191 1.191 16 C 0.031 3.969 17 C -0.166 4.166 18 C -0.160 4.160 19 C -0.173 4.173 20 C -0.154 4.154 21 C -0.173 4.173 22 C -0.160 4.160 23 C -0.167 4.167 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.226 0.774 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.039 0.961 31 H 0.035 0.965 32 H 0.074 0.926 33 H 0.146 0.854 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.158 -26.447 0.058 26.535 hybrid contribution -1.690 0.230 0.014 1.705 sum -3.848 -26.217 0.072 26.498 Atomic orbital electron populations 1.21651 0.80715 1.02710 1.01455 1.47143 1.05924 1.04971 1.79149 1.15994 0.85448 0.80431 0.77915 1.90870 1.11602 1.86231 1.58603 1.45668 1.09808 1.05474 1.78756 1.21368 0.95057 0.79659 1.01457 1.19791 0.95491 0.93927 0.96705 1.20925 0.95296 0.88252 1.51483 0.90576 1.25000 0.98453 0.95427 0.94423 1.69906 1.35833 0.97455 1.50541 0.86750 0.86129 0.77712 0.78468 1.20250 1.21286 1.19112 1.21639 0.99903 0.81625 0.93737 1.21987 0.98884 0.97520 0.98187 1.21804 0.94607 0.98090 1.01506 1.21895 0.95809 1.01884 0.97738 1.21680 0.99707 0.99420 0.94590 1.21893 0.95803 1.01892 0.97740 1.21801 0.94596 0.98066 1.01516 1.21997 0.98895 0.97586 0.98196 0.92966 0.91131 0.91541 0.77439 0.92171 0.92212 0.96092 0.96545 0.92575 0.85369 0.92025 0.91650 0.92205 0.90872 0.90158 0.92271 0.92184 0.92068 0.90155 0.92268 0.92191 0.90856 0.91608 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 9.57 59.84 0.57 1.34 16 2 N -0.63 -8.39 2.76 -179.65 -0.50 -8.88 16 3 C 0.70 12.37 8.28 -86.91 -0.72 11.65 16 4 O -0.59 -12.63 15.67 5.29 0.08 -12.55 16 5 N -0.74 -13.01 5.42 -65.22 -0.35 -13.37 16 6 C 0.15 3.12 5.61 -4.04 -0.02 3.10 16 7 C -0.02 -0.50 4.16 -27.88 -0.12 -0.61 16 8 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 9 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 10 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 11 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 12 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 16 C 0.13 1.54 1.93 -67.91 -0.13 1.41 16 17 C -0.13 -1.22 4.80 -26.73 -0.13 -1.35 16 18 C -0.12 -1.02 5.48 -26.74 -0.15 -1.17 16 19 C -0.14 -1.30 5.47 -26.73 -0.15 -1.45 16 20 C -0.12 -1.01 5.59 -26.73 -0.15 -1.16 16 21 C -0.14 -1.30 5.47 -26.74 -0.15 -1.45 16 22 C -0.12 -1.02 5.48 -26.74 -0.15 -1.16 16 23 C -0.13 -1.22 4.61 -26.72 -0.12 -1.34 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.54 6.81 -51.93 -0.35 0.19 16 26 H 0.07 0.63 6.36 -51.93 -0.33 0.30 16 27 H 0.39 5.82 6.20 -40.82 -0.25 5.56 16 28 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 31 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.13 1.76 1.58 -51.93 -0.08 1.67 16 34 H 0.06 0.51 7.82 -51.93 -0.41 0.10 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.54 4.69 -51.93 -0.24 0.30 16 38 H 0.08 0.99 5.47 -51.93 -0.28 0.70 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.45 7.47 -51.93 -0.39 0.07 16 42 H 0.08 0.99 5.47 -51.93 -0.28 0.70 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.54 4.69 -51.93 -0.24 0.29 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.50 7.08 -51.93 -0.37 0.13 16 LS Contribution 343.74 15.07 5.18 5.18 Total: -1.00 -32.31 343.74 -9.13 -41.45 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -7.82 Total: 3.85 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -1.83 Total: -5.41 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.08 Total: -49.02 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.08 Total: -12.55 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.31 -9.13 -41.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753264451.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.832 kcal (2) G-P(sol) polarization free energy of solvation -32.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds