Wall clock time and date at job start Tue Mar 31 2020 05:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47012 * 2 1 4 4 C 1.53003 * 109.46894 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.46960 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47370 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47304 * 179.97438 * 6 5 4 8 8 C 1.53007 * 109.47097 * 179.97438 * 7 6 5 9 9 N 1.46899 * 109.47232 * 179.97438 * 8 7 6 10 10 C 1.46954 * 111.00136 * 170.00079 * 9 8 7 11 11 C 1.53050 * 109.36493 * 183.19039 * 10 9 8 12 12 N 1.46960 * 109.36183 * 301.59865 * 11 10 9 13 13 C 1.46899 * 110.99909 * 183.18613 * 12 11 10 14 14 C 1.50702 * 109.47509 * 169.99961 * 13 12 11 15 15 H 1.08002 * 119.99441 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00075 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00481 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99886 * 179.73007 * 16 14 13 19 19 H 1.48494 * 109.47225 * 180.27306 * 18 16 14 20 20 H 1.48506 * 109.46866 * 300.27330 * 18 16 14 21 21 H 1.48498 * 109.47306 * 60.26614 * 18 16 14 22 22 C 1.46962 * 110.88081 * 59.32313 * 12 11 10 23 23 C 1.46961 * 110.99813 * 293.80558 * 9 8 7 24 24 H 1.09001 * 109.47598 * 60.00161 * 1 2 3 25 25 H 1.09001 * 109.47242 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47229 * 299.99732 * 1 2 3 27 27 H 1.09008 * 109.47270 * 240.00127 * 2 1 3 28 28 H 1.08996 * 109.47475 * 120.00310 * 2 1 3 29 29 H 1.09001 * 109.47123 * 60.00364 * 3 2 1 30 30 H 1.09001 * 109.47579 * 299.99813 * 3 2 1 31 31 H 1.08994 * 109.47366 * 60.00257 * 4 3 2 32 32 H 1.09001 * 109.47580 * 299.99755 * 4 3 2 33 33 H 1.08994 * 109.47114 * 59.99806 * 5 4 3 34 34 H 1.09009 * 109.46805 * 300.00004 * 5 4 3 35 35 H 1.09008 * 109.47326 * 59.99618 * 6 5 4 36 36 H 1.09004 * 109.46913 * 300.00181 * 6 5 4 37 37 H 1.09001 * 109.47123 * 60.00117 * 7 6 5 38 38 H 1.08993 * 109.47306 * 299.99664 * 7 6 5 39 39 H 1.09001 * 109.46671 * 60.00289 * 8 7 6 40 40 H 1.08993 * 109.47135 * 300.00218 * 8 7 6 41 41 H 1.09002 * 109.48561 * 63.22583 * 10 9 8 42 42 H 1.08995 * 109.49120 * 303.15742 * 10 9 8 43 43 H 1.08996 * 109.48853 * 181.63309 * 11 10 9 44 44 H 1.08996 * 109.49241 * 61.56585 * 11 10 9 45 45 H 1.09009 * 109.47165 * 50.00381 * 13 12 11 46 46 H 1.08998 * 109.47687 * 290.00832 * 13 12 11 47 47 H 0.97005 * 119.99656 * 359.72741 * 17 16 14 48 48 H 1.09002 * 109.48757 * 60.64076 * 22 12 11 49 49 H 1.09004 * 109.48878 * 180.70798 * 22 12 11 50 50 H 1.08998 * 109.48972 * 296.77446 * 23 9 8 51 51 H 1.08996 * 109.49248 * 56.84241 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0799 2.8850 0.0000 6 6 5.6099 2.8851 -0.0013 7 6 6.1199 4.3276 -0.0013 8 6 7.6499 4.3276 -0.0019 9 7 8.1396 5.7126 -0.0026 10 6 9.5891 5.7589 0.2350 11 6 10.0454 7.2180 0.3061 12 7 9.6984 7.8987 -0.9493 13 6 10.1879 9.2837 -0.9499 14 6 10.0353 9.8700 -2.3298 15 1 9.6161 9.2734 -3.1265 16 6 10.4308 11.1678 -2.5750 17 7 10.9408 11.8944 -1.6047 18 14 10.2485 11.8920 -4.2873 19 1 10.7489 13.2901 -4.2893 20 1 11.0351 11.0833 -5.2530 21 1 8.8167 11.8780 -4.6808 22 6 8.2488 7.8525 -1.1868 23 6 7.7925 6.3933 -1.2579 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9329 0.9288 -0.8908 32 1 3.9337 0.9285 0.8891 33 1 3.7170 3.3983 0.8904 34 1 3.7162 3.3994 -0.8896 35 1 5.9726 2.3719 -0.8920 36 1 5.9740 2.3706 0.8880 37 1 5.7573 4.8412 0.8892 38 1 5.7559 4.8417 -0.8908 39 1 8.0128 3.8140 -0.8922 40 1 8.0136 3.8137 0.8877 41 1 10.1075 5.2550 -0.5808 42 1 9.8194 5.2596 1.1761 43 1 11.1247 7.2547 0.4533 44 1 9.5474 7.7147 1.1388 45 1 11.2397 9.2975 -0.6636 46 1 9.6102 9.8737 -0.2384 47 1 11.0351 11.5185 -0.7154 48 1 7.7304 8.3563 -0.3710 49 1 8.0184 8.3518 -2.1280 50 1 8.2905 5.8967 -2.0906 51 1 6.7131 6.3566 -1.4051 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760943364.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:22 Heat of formation + Delta-G solvation = -38.409888 kcal Electronic energy + Delta-G solvation = -21980.308923 eV Core-core repulsion = 18912.642325 eV Total energy + Delta-G solvation = -3067.666598 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.92202 -37.17313 -35.77847 -34.28541 -32.70852 -31.25033 -30.43718 -28.46505 -26.72179 -24.82110 -23.40891 -23.22654 -21.77362 -21.42005 -21.15945 -20.67648 -19.23353 -16.75936 -16.41897 -15.85377 -15.52640 -14.70953 -14.46579 -14.40620 -14.32504 -13.95768 -13.82714 -13.70124 -13.63124 -13.29641 -12.79095 -12.60519 -12.33157 -12.04043 -11.83768 -11.74546 -11.57894 -11.39282 -11.21038 -11.13919 -11.03496 -10.99410 -10.84194 -10.77102 -10.67138 -10.55584 -10.47744 -10.27417 -10.08960 -9.87634 -8.65119 -8.35868 -8.12378 -7.29664 -6.35067 -4.03682 3.45349 3.47903 3.66405 4.00924 4.38007 4.53462 4.53671 4.69015 4.75181 4.85720 4.87516 4.96600 5.00332 5.19352 5.24316 5.30802 5.35694 5.39256 5.40664 5.47752 5.53427 5.54366 5.58688 5.61547 5.70901 5.74900 5.76076 5.77679 5.80022 5.84566 5.87886 5.93262 5.99422 6.02902 6.08103 6.14096 6.23420 6.27224 6.38129 6.54914 6.64776 7.00548 7.10494 7.27598 7.31420 7.82491 8.02311 8.34745 8.60180 8.89042 9.67147 11.04091 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.026843 B = 0.002217 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.841422 B =12629.120132 C =13411.649867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.122 4.122 4 C -0.120 4.120 5 C -0.119 4.119 6 C -0.117 4.117 7 C -0.116 4.116 8 C 0.056 3.944 9 N -0.541 5.541 10 C 0.062 3.938 11 C 0.055 3.945 12 N -0.532 5.532 13 C 0.183 3.817 14 C -0.588 4.588 15 H 0.056 0.944 16 C 0.013 3.987 17 N -0.914 5.914 18 Si 1.073 2.927 19 H -0.283 1.283 20 H -0.288 1.288 21 H -0.288 1.288 22 C 0.068 3.932 23 C 0.057 3.943 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.030 0.970 40 H 0.069 0.931 41 H 0.038 0.962 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.030 0.970 45 H 0.019 0.981 46 H -0.019 1.019 47 H 0.266 0.734 48 H 0.027 0.973 49 H 0.086 0.914 50 H 0.037 0.963 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.375 -22.414 4.534 27.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.158 4.158 5 C -0.157 4.157 6 C -0.156 4.156 7 C -0.154 4.154 8 C -0.072 4.072 9 N -0.266 5.266 10 C -0.066 4.066 11 C -0.074 4.074 12 N -0.257 5.257 13 C 0.057 3.943 14 C -0.626 4.626 15 H 0.074 0.926 16 C -0.190 4.190 17 N -0.551 5.551 18 Si 0.901 3.099 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.215 1.215 22 C -0.060 4.060 23 C -0.071 4.071 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.087 0.913 41 H 0.056 0.944 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.048 0.952 45 H 0.037 0.963 46 H -0.001 1.001 47 H 0.077 0.923 48 H 0.045 0.955 49 H 0.105 0.895 50 H 0.055 0.945 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.099 -21.028 3.633 26.141 hybrid contribution -0.189 -1.417 0.987 1.738 sum -15.288 -22.445 4.621 27.547 Atomic orbital electron populations 1.21783 0.95995 1.01497 1.01829 1.21546 0.95788 0.97111 1.01902 1.21642 0.95606 0.96579 1.02085 1.21619 0.95184 0.97064 1.01917 1.21596 0.95443 0.96504 1.02158 1.21558 0.95277 0.96893 1.01825 1.21606 0.94765 0.96272 1.02774 1.22084 0.95405 0.89392 1.00298 1.62173 1.14147 1.14899 1.35403 1.22123 0.87157 0.97342 0.99988 1.22091 0.99767 0.93254 0.92307 1.62192 1.12740 1.19528 1.31267 1.19808 0.94366 0.82552 0.97544 1.21962 1.45513 0.99809 0.95359 0.92566 1.25855 0.93852 0.94009 1.05301 1.70795 1.42176 1.39380 1.02729 0.83490 0.76306 0.76099 0.74027 1.20842 1.21413 1.21483 1.21995 0.88691 0.93767 1.01591 1.22274 0.99728 0.95430 0.89680 0.92763 0.92895 0.92776 0.92136 0.92152 0.92056 0.92040 0.92132 0.92146 0.91988 0.92025 0.92239 0.92127 0.91266 0.91858 0.95225 0.91300 0.94402 0.91232 0.91156 0.95223 0.96253 1.00150 0.92336 0.95461 0.89527 0.94464 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.15 0.37 -0.49 16 2 C -0.13 -0.76 5.93 -26.73 -0.16 -0.92 16 3 C -0.12 -0.80 5.21 -26.73 -0.14 -0.94 16 4 C -0.12 -0.84 5.22 -26.73 -0.14 -0.98 16 5 C -0.12 -0.94 5.21 -26.73 -0.14 -1.08 16 6 C -0.12 -1.01 5.21 -26.73 -0.14 -1.14 16 7 C -0.12 -1.23 5.15 -26.73 -0.14 -1.37 16 8 C 0.06 0.68 4.96 -3.82 -0.02 0.67 16 9 N -0.54 -8.33 4.71 -234.47 -1.10 -9.43 16 10 C 0.06 0.98 5.61 -3.77 -0.02 0.96 16 11 C 0.05 1.04 5.61 -3.77 -0.02 1.02 16 12 N -0.53 -12.03 4.70 -235.90 -1.11 -13.14 16 13 C 0.18 4.88 4.03 -4.98 -0.02 4.86 16 14 C -0.59 -16.97 8.47 -34.44 -0.29 -17.26 16 15 H 0.06 1.62 7.13 -52.49 -0.37 1.24 16 16 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 17 N -0.91 -28.24 13.65 55.43 0.76 -27.48 16 18 Si 1.07 25.58 29.90 -169.99 -5.08 20.49 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.07 1.40 5.43 -3.76 -0.02 1.38 16 23 C 0.06 0.94 5.41 -3.76 -0.02 0.92 16 24 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 35 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.71 6.49 -51.93 -0.34 0.37 16 39 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 40 H 0.07 0.77 8.03 -51.93 -0.42 0.36 16 41 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 43 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.02 0.54 7.90 -51.92 -0.41 0.13 16 46 H -0.02 -0.54 7.98 -51.93 -0.41 -0.96 16 47 H 0.27 8.23 7.22 -40.82 -0.29 7.93 16 48 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.09 1.90 6.79 -51.93 -0.35 1.55 16 50 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.07 1.07 6.34 -51.93 -0.33 0.74 16 LS Contribution 389.81 15.07 5.87 5.87 Total: -1.00 -30.61 389.81 -12.26 -42.87 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -10.59 Total: -5.10 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -1.00 Total: -14.08 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: -1.46 Total: -50.06 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -5.08 Total: 20.49 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.61 -12.26 -42.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760943364.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.460 kcal (2) G-P(sol) polarization free energy of solvation -30.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds