Wall clock time and date at job start Tue Mar 31 2020 05:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46979 * 2 1 4 4 C 1.52994 * 109.47022 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47050 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47366 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47617 * 180.02562 * 6 5 4 8 8 H 1.09008 * 109.46903 * 305.00415 * 7 6 5 9 9 C 1.52992 * 109.47480 * 184.99908 * 7 6 5 10 10 N 1.46907 * 109.47163 * 64.99692 * 7 6 5 11 11 C 1.46898 * 110.99892 * 226.16834 * 10 7 6 12 12 C 1.53031 * 109.46337 * 273.63693 * 11 10 7 13 13 C 1.53188 * 109.31611 * 178.60224 * 12 11 10 14 14 N 1.46931 * 108.76458 * 54.65420 * 13 12 11 15 15 C 1.36934 * 120.62772 * 126.36021 * 14 13 12 16 16 H 1.08003 * 120.00162 * 209.86448 * 15 14 13 17 17 C 1.38812 * 120.00425 * 29.87400 * 15 14 13 18 18 N 1.31624 * 119.99782 * 14.72700 * 17 15 14 19 19 Si 1.86795 * 120.00262 * 194.72652 * 17 15 14 20 20 H 1.48508 * 109.46815 * 60.00155 * 19 17 15 21 21 H 1.48498 * 109.47281 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47437 * 300.00106 * 19 17 15 23 23 C 1.46921 * 118.73952 * 306.38534 * 14 13 12 24 24 C 1.53043 * 109.45894 * 153.58160 * 11 10 7 25 25 H 1.09007 * 109.46949 * 60.00064 * 1 2 3 26 26 H 1.09005 * 109.47295 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47485 * 300.00141 * 1 2 3 28 28 H 1.09003 * 109.47090 * 240.00193 * 2 1 3 29 29 H 1.08997 * 109.46777 * 120.00014 * 2 1 3 30 30 H 1.08999 * 109.46587 * 60.00171 * 3 2 1 31 31 H 1.08992 * 109.46842 * 300.00116 * 3 2 1 32 32 H 1.09001 * 109.47249 * 59.99977 * 4 3 2 33 33 H 1.09004 * 109.47600 * 300.00320 * 4 3 2 34 34 H 1.08997 * 109.47404 * 299.99943 * 5 4 3 35 35 H 1.09003 * 109.46997 * 60.00449 * 5 4 3 36 36 H 1.09007 * 109.46810 * 300.00120 * 6 5 4 37 37 H 1.09001 * 109.47265 * 59.99824 * 6 5 4 38 38 H 1.08997 * 109.47141 * 64.08932 * 9 7 6 39 39 H 1.09000 * 109.47627 * 184.08793 * 9 7 6 40 40 H 1.08997 * 109.47039 * 304.08812 * 9 7 6 41 41 H 1.00895 * 110.99617 * 102.21669 * 10 7 6 42 42 H 1.09002 * 109.45986 * 33.61026 * 11 10 7 43 43 H 1.09003 * 109.49573 * 298.56741 * 12 11 10 44 44 H 1.09005 * 109.50205 * 58.66286 * 12 11 10 45 45 H 1.08999 * 109.59806 * 294.86627 * 13 12 11 46 46 H 1.09003 * 109.58877 * 174.43471 * 13 12 11 47 47 H 0.96998 * 120.00076 * 180.02562 * 18 17 15 48 48 H 1.08997 * 109.58641 * 293.82285 * 23 14 13 49 49 H 1.08996 * 109.70770 * 173.46363 * 23 14 13 50 50 H 1.09004 * 109.49468 * 301.33906 * 24 11 10 51 51 H 1.08993 * 109.49543 * 61.39871 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8850 0.0000 6 6 5.6099 2.8851 0.0000 7 6 6.1199 4.3276 0.0000 8 1 5.6852 4.8666 -0.8418 9 6 7.6447 4.3295 -0.1257 10 7 5.7313 4.9844 1.2553 11 6 5.1713 6.3183 1.0000 12 6 6.3060 7.3426 0.9292 13 6 5.7216 8.7263 0.6283 14 7 4.6934 9.0335 1.6319 15 6 4.7493 10.1951 2.3549 16 1 4.3460 10.2279 3.3562 17 6 5.3241 11.3306 1.8008 18 7 5.5505 11.3884 0.5054 19 14 5.7764 12.7766 2.8933 20 1 6.7620 12.3369 3.9135 21 1 6.3706 13.8563 2.0648 22 1 4.5569 13.2860 3.5705 23 6 3.6045 8.0705 1.8454 24 6 4.2128 6.6941 2.1323 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 3.9337 0.9286 -0.8891 33 1 3.9330 0.9288 0.8908 34 1 3.7170 3.3984 -0.8904 35 1 3.7162 3.3994 0.8896 36 1 5.9733 2.3717 0.8903 37 1 5.9733 2.3709 -0.8897 38 1 7.9303 3.9079 -1.0894 39 1 8.0141 5.3524 -0.0528 40 1 8.0760 3.7295 0.6756 41 1 6.5114 5.0357 1.8931 42 1 4.6301 6.3099 0.0538 43 1 6.8321 7.3694 1.8835 44 1 7.0011 7.0616 0.1379 45 1 5.2736 8.7257 -0.3654 46 1 6.5125 9.4750 0.6744 47 1 5.9525 12.1817 0.1182 48 1 2.9839 8.0164 0.9510 49 1 2.9965 8.3853 2.6935 50 1 3.4177 5.9513 2.1975 51 1 4.7586 6.7264 3.0752 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765856277.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:16 Heat of formation + Delta-G solvation = -25.031509 kcal Electronic energy + Delta-G solvation = -23020.245831 eV Core-core repulsion = 19953.159363 eV Total energy + Delta-G solvation = -3067.086468 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -38.54954 -36.85382 -35.74948 -33.49732 -32.24177 -30.69146 -29.77290 -28.38818 -27.89844 -24.69281 -24.22238 -22.02034 -21.58976 -21.30067 -20.95030 -20.47501 -18.93910 -16.77730 -16.11459 -15.38912 -14.99678 -14.65231 -14.30822 -14.04602 -13.92128 -13.56739 -13.41071 -13.33345 -13.04866 -12.75901 -12.59399 -12.48237 -12.41662 -11.87145 -11.72619 -11.56241 -11.37568 -11.24976 -11.04068 -10.96863 -10.74373 -10.68740 -10.66590 -10.62596 -10.45609 -10.36847 -10.24094 -10.11986 -9.95179 -9.59533 -9.40411 -8.47059 -7.93522 -6.59919 -5.75684 -3.20226 3.39548 3.44788 3.46216 4.45532 4.51859 4.55849 4.77291 4.92927 4.98516 5.11542 5.16905 5.32477 5.39138 5.40942 5.46339 5.49388 5.51664 5.61119 5.62479 5.69741 5.72244 5.77852 5.81955 5.86324 5.90812 6.00087 6.01302 6.04469 6.09268 6.14437 6.21278 6.23806 6.25530 6.40649 6.40946 6.54888 6.61946 6.62657 6.70505 6.74268 6.88982 7.07066 7.38335 7.51401 7.66575 7.77821 7.82401 8.50037 9.25336 9.88477 10.46541 11.32662 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.022579 B = 0.003126 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.785215 B = 8954.341684 C = 9842.468001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.118 4.118 5 C -0.113 4.113 6 C -0.102 4.102 7 C 0.081 3.919 8 H 0.067 0.933 9 C -0.176 4.176 10 N -0.682 5.682 11 C 0.097 3.903 12 C -0.167 4.167 13 C 0.176 3.824 14 N -0.592 5.592 15 C -0.251 4.251 16 H 0.064 0.936 17 C 0.002 3.998 18 N -0.905 5.905 19 Si 0.903 3.097 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.145 3.855 24 C -0.117 4.117 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.337 0.663 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.044 0.956 45 H 0.015 0.985 46 H 0.084 0.916 47 H 0.254 0.746 48 H 0.015 0.985 49 H 0.053 0.947 50 H 0.054 0.946 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.970 -20.471 -2.163 20.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.156 4.156 5 C -0.150 4.150 6 C -0.140 4.140 7 C -0.029 4.029 8 H 0.085 0.915 9 C -0.235 4.235 10 N -0.312 5.312 11 C -0.012 4.012 12 C -0.208 4.208 13 C 0.049 3.951 14 N -0.315 5.315 15 C -0.381 4.381 16 H 0.081 0.919 17 C -0.197 4.197 18 N -0.550 5.550 19 Si 0.733 3.267 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.209 1.209 23 C 0.018 3.982 24 C -0.156 4.156 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.155 0.845 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.033 0.967 46 H 0.102 0.898 47 H 0.064 0.936 48 H 0.033 0.967 49 H 0.071 0.929 50 H 0.072 0.928 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.535 -20.632 -2.232 20.906 hybrid contribution 1.170 1.316 0.195 1.772 sum -1.364 -19.316 -2.038 19.471 Atomic orbital electron populations 1.21789 0.96105 1.01311 1.01895 1.21546 0.95691 0.97336 1.01684 1.21628 0.95809 0.96247 1.02162 1.21612 0.95036 0.97622 1.01332 1.21493 0.95267 0.95633 1.02625 1.21573 0.95856 0.95750 1.00828 1.21621 0.93237 0.95330 0.92684 0.91494 1.22466 0.97067 1.02148 1.01794 1.60737 1.36869 1.21205 1.12353 1.21600 0.95287 0.85819 0.98510 1.22911 0.97700 0.99883 1.00299 1.20675 0.92484 0.91445 0.90460 1.44023 1.23570 1.19191 1.44720 1.19146 1.36655 0.87180 0.95099 0.91875 1.25101 1.02173 0.97162 0.95242 1.70007 1.46963 1.28729 1.09273 0.86363 0.78502 0.82088 0.79764 1.21068 1.21664 1.20851 1.20923 0.90637 0.88618 0.98017 1.21975 0.98052 0.97811 0.97812 0.92804 0.93053 0.92700 0.92346 0.92234 0.91906 0.92187 0.92746 0.92367 0.92933 0.90532 0.92175 0.92846 0.92579 0.92264 0.92560 0.84516 0.91554 0.92731 0.93723 0.96652 0.89793 0.93649 0.96711 0.92855 0.92763 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.12 -1.00 5.93 -26.73 -0.16 -1.16 16 3 C -0.12 -1.10 5.21 -26.73 -0.14 -1.24 16 4 C -0.12 -1.12 5.21 -26.74 -0.14 -1.26 16 5 C -0.11 -1.24 5.10 -26.73 -0.14 -1.38 16 6 C -0.10 -1.10 4.89 -26.73 -0.13 -1.23 16 7 C 0.08 1.00 2.64 -67.72 -0.18 0.82 16 8 H 0.07 0.91 7.15 -51.92 -0.37 0.54 16 9 C -0.18 -1.97 9.06 37.15 0.34 -1.64 16 10 N -0.68 -9.50 5.58 -99.70 -0.56 -10.06 16 11 C 0.10 1.64 2.38 -67.68 -0.16 1.48 16 12 C -0.17 -3.18 5.31 -26.62 -0.14 -3.32 16 13 C 0.18 4.24 5.28 -3.71 -0.02 4.22 16 14 N -0.59 -15.06 2.99 -172.32 -0.51 -15.57 16 15 C -0.25 -6.99 9.58 -15.06 -0.14 -7.14 16 16 H 0.06 1.73 7.87 -52.48 -0.41 1.31 16 17 C 0.00 0.05 4.96 -17.43 -0.09 -0.04 16 18 N -0.91 -26.59 11.18 55.49 0.62 -25.97 16 19 Si 0.90 21.93 29.58 -169.99 -5.03 16.90 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.14 3.11 6.51 -3.71 -0.02 3.09 16 24 C -0.12 -2.09 5.69 -26.61 -0.15 -2.25 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.98 7.75 -51.93 -0.40 0.58 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.73 6.60 -51.93 -0.34 0.39 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.34 4.65 7.92 -39.29 -0.31 4.34 16 42 H 0.07 1.19 7.33 -51.93 -0.38 0.80 16 43 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.04 0.78 6.58 -51.93 -0.34 0.44 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 2.27 6.12 -51.93 -0.32 1.96 16 47 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 48 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 49 H 0.05 1.13 7.94 -51.93 -0.41 0.71 16 50 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 51 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 386.60 15.07 5.83 5.83 Total: -1.00 -28.32 386.60 -11.02 -39.34 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -10.46 Total: 1.37 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -0.91 Total: -11.83 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: -0.45 Total: -51.60 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -28.32 -11.02 -39.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765856277.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.304 kcal (2) G-P(sol) polarization free energy of solvation -28.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds