Wall clock time and date at job start Tue Mar 31 2020 05:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46979 * 2 1 4 4 C 1.52994 * 109.47022 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47050 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47366 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47617 * 180.02562 * 6 5 4 8 8 H 1.09008 * 109.46903 * 305.00415 * 7 6 5 9 9 C 1.52992 * 109.47480 * 184.99908 * 7 6 5 10 10 N 1.46907 * 109.47163 * 64.99692 * 7 6 5 11 11 C 1.46898 * 110.99892 * 226.16834 * 10 7 6 12 12 C 1.53031 * 109.46337 * 273.63693 * 11 10 7 13 13 C 1.53188 * 109.31611 * 178.60224 * 12 11 10 14 14 N 1.46931 * 108.76458 * 54.65420 * 13 12 11 15 15 C 1.36934 * 120.62772 * 126.36021 * 14 13 12 16 16 H 1.08003 * 120.00162 * 209.86448 * 15 14 13 17 17 C 1.38812 * 120.00425 * 29.87400 * 15 14 13 18 18 N 1.31624 * 119.99782 * 14.72700 * 17 15 14 19 19 Si 1.86795 * 120.00262 * 194.72652 * 17 15 14 20 20 H 1.48508 * 109.46815 * 60.00155 * 19 17 15 21 21 H 1.48498 * 109.47281 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47437 * 300.00106 * 19 17 15 23 23 C 1.46921 * 118.73952 * 306.38534 * 14 13 12 24 24 C 1.53043 * 109.45894 * 153.58160 * 11 10 7 25 25 H 1.09007 * 109.46949 * 60.00064 * 1 2 3 26 26 H 1.09005 * 109.47295 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47485 * 300.00141 * 1 2 3 28 28 H 1.09003 * 109.47090 * 240.00193 * 2 1 3 29 29 H 1.08997 * 109.46777 * 120.00014 * 2 1 3 30 30 H 1.08999 * 109.46587 * 60.00171 * 3 2 1 31 31 H 1.08992 * 109.46842 * 300.00116 * 3 2 1 32 32 H 1.09001 * 109.47249 * 59.99977 * 4 3 2 33 33 H 1.09004 * 109.47600 * 300.00320 * 4 3 2 34 34 H 1.08997 * 109.47404 * 299.99943 * 5 4 3 35 35 H 1.09003 * 109.46997 * 60.00449 * 5 4 3 36 36 H 1.09007 * 109.46810 * 300.00120 * 6 5 4 37 37 H 1.09001 * 109.47265 * 59.99824 * 6 5 4 38 38 H 1.08997 * 109.47141 * 64.08932 * 9 7 6 39 39 H 1.09000 * 109.47627 * 184.08793 * 9 7 6 40 40 H 1.08997 * 109.47039 * 304.08812 * 9 7 6 41 41 H 1.00895 * 110.99617 * 102.21669 * 10 7 6 42 42 H 1.09002 * 109.45986 * 33.61026 * 11 10 7 43 43 H 1.09003 * 109.49573 * 298.56741 * 12 11 10 44 44 H 1.09005 * 109.50205 * 58.66286 * 12 11 10 45 45 H 1.08999 * 109.59806 * 294.86627 * 13 12 11 46 46 H 1.09003 * 109.58877 * 174.43471 * 13 12 11 47 47 H 0.96998 * 120.00076 * 180.02562 * 18 17 15 48 48 H 1.08997 * 109.58641 * 293.82285 * 23 14 13 49 49 H 1.08996 * 109.70770 * 173.46363 * 23 14 13 50 50 H 1.09004 * 109.49468 * 301.33906 * 24 11 10 51 51 H 1.08993 * 109.49543 * 61.39871 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8850 0.0000 6 6 5.6099 2.8851 0.0000 7 6 6.1199 4.3276 0.0000 8 1 5.6852 4.8666 -0.8418 9 6 7.6447 4.3295 -0.1257 10 7 5.7313 4.9844 1.2553 11 6 5.1713 6.3183 1.0000 12 6 6.3060 7.3426 0.9292 13 6 5.7216 8.7263 0.6283 14 7 4.6934 9.0335 1.6319 15 6 4.7493 10.1951 2.3549 16 1 4.3460 10.2279 3.3562 17 6 5.3241 11.3306 1.8008 18 7 5.5505 11.3884 0.5054 19 14 5.7764 12.7766 2.8933 20 1 6.7620 12.3369 3.9135 21 1 6.3706 13.8563 2.0648 22 1 4.5569 13.2860 3.5705 23 6 3.6045 8.0705 1.8454 24 6 4.2128 6.6941 2.1323 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 3.9337 0.9286 -0.8891 33 1 3.9330 0.9288 0.8908 34 1 3.7170 3.3984 -0.8904 35 1 3.7162 3.3994 0.8896 36 1 5.9733 2.3717 0.8903 37 1 5.9733 2.3709 -0.8897 38 1 7.9303 3.9079 -1.0894 39 1 8.0141 5.3524 -0.0528 40 1 8.0760 3.7295 0.6756 41 1 6.5114 5.0357 1.8931 42 1 4.6301 6.3099 0.0538 43 1 6.8321 7.3694 1.8835 44 1 7.0011 7.0616 0.1379 45 1 5.2736 8.7257 -0.3654 46 1 6.5125 9.4750 0.6744 47 1 5.9525 12.1817 0.1182 48 1 2.9839 8.0164 0.9510 49 1 2.9965 8.3853 2.6935 50 1 3.4177 5.9513 2.1975 51 1 4.7586 6.7264 3.0752 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765856277.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:16 Heat of formation + Delta-G solvation = -38.865966 kcal Electronic energy + Delta-G solvation = -23020.845738 eV Core-core repulsion = 19953.159363 eV Total energy + Delta-G solvation = -3067.686375 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.93553 -38.04533 -36.80282 -34.95077 -33.53640 -32.17505 -31.51465 -29.66089 -28.90313 -26.45186 -25.16187 -23.73083 -23.16334 -22.20369 -21.77458 -21.49899 -20.51206 -18.74123 -17.04454 -16.84643 -16.34846 -16.10319 -15.39782 -15.26344 -15.24009 -14.90917 -14.81324 -14.60831 -14.24720 -14.10567 -13.84119 -13.57930 -13.34461 -13.19652 -13.01597 -12.73156 -12.59554 -12.51417 -12.44345 -12.31146 -12.11838 -12.04989 -11.98345 -11.85620 -11.77797 -11.62447 -11.43496 -11.40479 -11.22635 -11.07672 -10.89206 -10.57203 -9.18770 -8.65581 -7.88003 -5.36473 1.45344 1.47664 1.54539 2.50060 3.22050 3.32167 3.69984 3.77159 3.97976 4.08722 4.15911 4.18286 4.25121 4.32466 4.35377 4.46085 4.49477 4.55922 4.64821 4.69671 4.70974 4.72417 4.85183 4.85809 4.94094 4.95004 4.98758 5.00840 5.09648 5.13617 5.16310 5.22530 5.23916 5.26082 5.30935 5.33286 5.38010 5.40274 5.41822 5.50583 5.51626 5.61162 5.63297 5.70169 5.72123 6.27568 6.39246 6.61241 7.14268 7.85224 8.38044 9.17765 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.022579 B = 0.003126 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.785215 B = 8954.341684 C = 9842.468001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.121 4.121 4 C -0.113 4.113 5 C -0.109 4.109 6 C -0.095 4.095 7 C 0.080 3.920 8 H 0.053 0.947 9 C -0.172 4.172 10 N -0.673 5.673 11 C 0.111 3.889 12 C -0.150 4.150 13 C 0.182 3.818 14 N -0.610 5.610 15 C -0.264 4.264 16 H 0.065 0.935 17 C -0.052 4.052 18 N -0.937 5.937 19 Si 0.969 3.031 20 H -0.278 1.278 21 H -0.294 1.294 22 H -0.274 1.274 23 C 0.141 3.859 24 C -0.103 4.103 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.044 0.956 40 H 0.067 0.933 41 H 0.341 0.659 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.060 0.940 45 H -0.009 1.009 46 H 0.049 0.951 47 H 0.250 0.750 48 H 0.010 0.990 49 H 0.053 0.947 50 H 0.075 0.925 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.652 -22.469 -1.504 22.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C -0.158 4.158 4 C -0.150 4.150 5 C -0.147 4.147 6 C -0.133 4.133 7 C -0.030 4.030 8 H 0.071 0.929 9 C -0.230 4.230 10 N -0.302 5.302 11 C 0.001 3.999 12 C -0.190 4.190 13 C 0.056 3.944 14 N -0.334 5.334 15 C -0.395 4.395 16 H 0.083 0.917 17 C -0.247 4.247 18 N -0.583 5.583 19 Si 0.797 3.203 20 H -0.204 1.204 21 H -0.220 1.220 22 H -0.200 1.200 23 C 0.015 3.985 24 C -0.142 4.142 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.160 0.840 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.010 0.990 46 H 0.067 0.933 47 H 0.059 0.941 48 H 0.028 0.972 49 H 0.072 0.928 50 H 0.094 0.906 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.226 -22.667 -1.560 22.830 hybrid contribution 1.025 1.908 -0.045 2.166 sum -1.200 -20.759 -1.605 20.856 Atomic orbital electron populations 1.21799 0.95824 1.01878 1.01702 1.21532 0.95967 0.96499 1.02080 1.21614 0.95735 0.96965 1.01500 1.21554 0.95081 0.96523 1.01844 1.21438 0.95546 0.96440 1.01285 1.21516 0.95481 0.94560 1.01724 1.21695 0.94171 0.95926 0.91211 0.92853 1.22406 0.95911 1.01615 1.03067 1.60711 1.37320 1.18842 1.13348 1.21341 0.94212 0.86694 0.97676 1.22703 0.98488 0.97365 1.00472 1.20478 0.91292 0.93383 0.89260 1.44294 1.25046 1.19442 1.44616 1.19489 1.36304 0.88195 0.95468 0.91730 1.25885 1.02530 0.99834 0.96449 1.70173 1.47985 1.29245 1.10906 0.85319 0.78334 0.78689 0.77971 1.20366 1.21965 1.19982 1.21066 0.89946 0.89745 0.97737 1.21790 0.98673 0.95941 0.97828 0.92928 0.92126 0.92999 0.91813 0.91933 0.92767 0.92683 0.91922 0.92048 0.93814 0.92310 0.91738 0.91376 0.91250 0.93651 0.91393 0.84013 0.92399 0.93091 0.92184 0.99043 0.93257 0.94121 0.97221 0.92841 0.90613 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 71.98 0.71 -1.39 16 2 C -0.12 -1.77 5.93 30.60 0.18 -1.59 16 3 C -0.12 -2.04 5.21 30.59 0.16 -1.88 16 4 C -0.11 -1.90 5.21 30.59 0.16 -1.74 16 5 C -0.11 -2.23 5.10 30.59 0.16 -2.08 16 6 C -0.09 -1.81 4.89 30.59 0.15 -1.66 16 7 C 0.08 1.80 2.64 44.91 0.12 1.92 16 8 H 0.05 1.38 7.15 -2.38 -0.02 1.36 16 9 C -0.17 -3.43 9.06 71.98 0.65 -2.78 16 10 N -0.67 -17.46 5.58 -469.34 -2.62 -20.08 16 11 C 0.11 3.63 2.38 44.94 0.11 3.74 16 12 C -0.15 -5.65 5.31 30.67 0.16 -5.49 16 13 C 0.18 9.05 5.28 86.36 0.46 9.50 16 14 N -0.61 -31.59 2.99 -699.11 -2.09 -33.67 16 15 C -0.26 -14.92 9.58 84.03 0.81 -14.11 16 16 H 0.07 3.55 7.87 -2.91 -0.02 3.53 16 17 C -0.05 -2.95 4.96 84.86 0.42 -2.53 16 18 N -0.94 -56.62 11.18 21.65 0.24 -56.38 16 19 Si 0.97 45.58 29.58 68.60 2.03 47.61 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 22 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 23 C 0.14 6.05 6.51 86.36 0.56 6.62 16 24 C -0.10 -3.57 5.69 30.67 0.17 -3.39 16 25 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 26 H 0.06 0.70 8.14 -2.38 -0.02 0.69 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 1.41 7.75 -2.39 -0.02 1.40 16 36 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 39 H 0.04 1.03 6.60 -2.39 -0.02 1.02 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.34 8.63 7.92 -89.70 -0.71 7.92 16 42 H 0.06 2.03 7.33 -2.39 -0.02 2.01 16 43 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.06 2.07 6.58 -2.38 -0.02 2.06 16 45 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 46 H 0.05 2.77 6.12 -2.39 -0.01 2.76 16 47 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 48 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 49 H 0.05 2.25 7.94 -2.39 -0.02 2.23 16 50 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 51 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -61.43 386.60 2.67 -58.76 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.13 Total: 20.63 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 4.98 Total: -16.87 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -4.47 Total: -110.13 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -61.43 2.67 -58.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765856277.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.893 kcal (2) G-P(sol) polarization free energy of solvation -61.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds