Wall clock time and date at job start Tue Mar 31 2020 05:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47381 * 2 1 4 4 C 1.52999 * 109.47226 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47151 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46882 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.46882 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.46923 * 55.00356 * 7 6 5 9 9 C 1.53003 * 109.47451 * 175.00067 * 7 6 5 10 10 N 1.46900 * 109.47458 * 295.00323 * 7 6 5 11 11 C 1.46903 * 111.00029 * 154.99615 * 10 7 6 12 12 C 1.53036 * 109.46343 * 275.06770 * 11 10 7 13 13 C 1.53190 * 109.31163 * 178.61470 * 12 11 10 14 14 N 1.46919 * 108.77629 * 54.63962 * 13 12 11 15 15 C 1.36935 * 120.63315 * 126.37161 * 14 13 12 16 16 H 1.07998 * 119.99988 * 331.85111 * 15 14 13 17 17 C 1.38809 * 120.00476 * 151.85750 * 15 14 13 18 18 N 1.31625 * 119.99717 * 343.07278 * 17 15 14 19 19 Si 1.86801 * 120.00256 * 163.06791 * 17 15 14 20 20 H 1.48503 * 109.46947 * 60.00257 * 19 17 15 21 21 H 1.48504 * 109.47233 * 179.97438 * 19 17 15 22 22 H 1.48491 * 109.47216 * 300.00161 * 19 17 15 23 23 C 1.46931 * 118.73723 * 306.38517 * 14 13 12 24 24 C 1.53048 * 109.45624 * 154.99900 * 11 10 7 25 25 H 1.08999 * 109.47045 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46651 * 300.00095 * 1 2 3 27 27 H 1.08999 * 109.47093 * 59.99822 * 1 2 3 28 28 H 1.09004 * 109.46672 * 239.99364 * 2 1 3 29 29 H 1.08999 * 109.47093 * 120.00178 * 2 1 3 30 30 H 1.09003 * 109.47005 * 59.99887 * 3 2 1 31 31 H 1.08999 * 109.47153 * 300.00141 * 3 2 1 32 32 H 1.08994 * 109.47194 * 60.00044 * 4 3 2 33 33 H 1.08999 * 109.47016 * 300.00036 * 4 3 2 34 34 H 1.09003 * 109.46817 * 59.99858 * 5 4 3 35 35 H 1.08999 * 109.47415 * 300.00067 * 5 4 3 36 36 H 1.08994 * 109.47103 * 60.00539 * 6 5 4 37 37 H 1.08999 * 109.47375 * 300.00367 * 6 5 4 38 38 H 1.09003 * 109.46865 * 59.99682 * 9 7 6 39 39 H 1.08992 * 109.47334 * 180.02562 * 9 7 6 40 40 H 1.09002 * 109.46937 * 300.00815 * 9 7 6 41 41 H 1.00896 * 110.99630 * 278.95305 * 10 7 6 42 42 H 1.09000 * 109.45929 * 35.03307 * 11 10 7 43 43 H 1.08997 * 109.49783 * 298.56905 * 12 11 10 44 44 H 1.09010 * 109.49575 * 58.66610 * 12 11 10 45 45 H 1.09002 * 109.59061 * 294.84515 * 13 12 11 46 46 H 1.08999 * 109.70202 * 174.49738 * 13 12 11 47 47 H 0.97001 * 119.99866 * 180.02562 * 18 17 15 48 48 H 1.08995 * 109.58711 * 293.82710 * 23 14 13 49 49 H 1.09000 * 109.70438 * 173.46439 * 23 14 13 50 50 H 1.08993 * 109.49526 * 301.33869 * 24 11 10 51 51 H 1.08997 * 109.49203 * 61.44001 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8849 -0.0013 6 6 5.6101 2.8847 -0.0013 7 6 6.1202 4.3272 -0.0013 8 1 5.6856 4.8663 0.8406 9 6 7.6450 4.3291 0.1244 10 7 5.7315 4.9841 -1.2565 11 6 5.6527 6.4411 -1.0857 12 6 4.2743 6.8163 -0.5371 13 6 4.2079 8.3324 -0.3278 14 7 4.5573 8.9997 -1.5893 15 6 3.7212 9.9344 -2.1391 16 1 2.6583 9.8832 -1.9546 17 6 4.2396 10.9476 -2.9338 18 7 5.5269 11.2195 -2.8968 19 14 3.1103 11.9251 -4.0557 20 1 2.0705 12.6042 -3.2415 21 1 3.9034 12.9417 -4.7925 22 1 2.4592 11.0071 -5.0244 23 6 5.8209 8.6448 -2.2497 24 6 5.8692 7.1252 -2.4376 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5140 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.9330 0.9287 -0.8908 33 1 3.9338 0.9284 0.8891 34 1 3.7171 3.3989 0.8887 35 1 3.7165 3.3985 -0.8912 36 1 5.9734 2.3706 -0.8910 37 1 5.9735 2.3712 0.8889 38 1 8.0796 3.7900 -0.7174 39 1 8.0083 5.3567 0.1249 40 1 7.9334 3.8416 1.0557 41 1 6.3654 4.7412 -2.0029 42 1 6.4227 6.7669 -0.3864 43 1 3.5051 6.5131 -1.2474 44 1 4.1113 6.3102 0.4145 45 1 4.9145 8.6255 0.4486 46 1 3.1990 8.6185 -0.0304 47 1 5.8891 11.9278 -3.4518 48 1 6.6591 8.9632 -1.6300 49 1 5.8779 9.1350 -3.2216 50 1 6.8415 6.8389 -2.8385 51 1 5.0850 6.8190 -3.1299 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765856278.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:19 Heat of formation + Delta-G solvation = -25.126156 kcal Electronic energy + Delta-G solvation = -23011.269856 eV Core-core repulsion = 19944.179284 eV Total energy + Delta-G solvation = -3067.090572 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -38.52288 -36.86526 -35.77372 -33.49965 -32.21783 -30.76539 -29.71603 -28.42596 -27.88242 -24.73821 -24.22748 -22.29558 -21.63000 -21.16997 -20.95413 -20.09591 -18.98287 -16.72338 -16.10806 -15.47495 -14.88810 -14.74751 -14.34000 -14.02504 -13.95919 -13.70971 -13.44568 -13.38788 -13.06446 -12.74945 -12.66113 -12.46027 -12.23405 -11.89821 -11.73438 -11.58529 -11.39246 -11.28965 -11.05640 -10.98097 -10.81786 -10.72093 -10.67648 -10.50868 -10.43295 -10.35438 -10.21966 -10.11844 -9.87361 -9.53265 -9.37526 -8.42496 -8.02525 -6.61985 -5.74846 -3.16666 3.41336 3.46649 3.48576 4.43992 4.53701 4.54660 4.77541 4.93181 4.96040 5.10586 5.15715 5.30183 5.40025 5.40459 5.45088 5.49152 5.51169 5.60950 5.61574 5.67981 5.70798 5.76709 5.80440 5.86007 5.88617 5.97393 6.00100 6.03719 6.06601 6.13724 6.21229 6.23065 6.26670 6.40170 6.41617 6.57144 6.59686 6.65503 6.70797 6.73524 6.89084 7.10697 7.42132 7.48309 7.69905 7.75610 7.83973 8.49956 9.26045 9.89847 10.47088 11.33892 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.016742 B = 0.003381 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.086484 B = 8280.364389 C = 9554.457577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.119 4.119 5 C -0.112 4.112 6 C -0.103 4.103 7 C 0.081 3.919 8 H 0.075 0.925 9 C -0.182 4.182 10 N -0.680 5.680 11 C 0.097 3.903 12 C -0.115 4.115 13 C 0.145 3.855 14 N -0.591 5.591 15 C -0.250 4.250 16 H 0.064 0.936 17 C 0.001 3.999 18 N -0.905 5.905 19 Si 0.902 3.098 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.284 1.284 23 C 0.174 3.826 24 C -0.140 4.140 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.334 0.666 42 H 0.034 0.966 43 H 0.062 0.938 44 H 0.044 0.956 45 H 0.013 0.987 46 H 0.053 0.947 47 H 0.253 0.747 48 H 0.014 0.986 49 H 0.087 0.913 50 H 0.043 0.957 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.964 -20.177 6.098 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.159 4.159 4 C -0.157 4.157 5 C -0.149 4.149 6 C -0.141 4.141 7 C -0.029 4.029 8 H 0.093 0.907 9 C -0.241 4.241 10 N -0.311 5.311 11 C -0.012 4.012 12 C -0.154 4.154 13 C 0.018 3.982 14 N -0.314 5.314 15 C -0.380 4.380 16 H 0.082 0.918 17 C -0.198 4.198 18 N -0.550 5.550 19 Si 0.732 3.268 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.210 1.210 23 C 0.048 3.952 24 C -0.180 4.180 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.152 0.848 42 H 0.052 0.948 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.031 0.969 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.033 0.967 49 H 0.106 0.894 50 H 0.062 0.938 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.561 -20.122 6.110 21.087 hybrid contribution 0.555 0.768 -0.501 1.071 sum -1.006 -19.354 5.609 20.176 Atomic orbital electron populations 1.21789 0.96101 1.01306 1.01912 1.21544 0.95700 0.97337 1.01662 1.21627 0.95774 0.96240 1.02211 1.21620 0.95093 0.97654 1.01288 1.21491 0.94978 0.95545 1.02907 1.21543 0.96114 0.95509 1.00923 1.21606 0.92536 0.95248 0.93522 0.90678 1.22508 0.97912 1.01879 1.01763 1.60711 1.55307 1.09117 1.05934 1.21443 0.97002 0.85371 0.97390 1.21990 0.96496 0.97699 0.99262 1.20924 0.98175 0.90222 0.88912 1.44028 1.21747 1.44861 1.20769 1.19157 0.89225 1.03325 1.26262 0.91782 1.25041 0.96022 0.96779 1.01910 1.70027 1.11709 1.32060 1.41193 0.86368 0.79973 0.79450 0.80988 1.20915 1.21685 1.21019 1.20722 0.87131 0.88266 0.99117 1.22387 0.99644 1.00300 0.95665 0.93058 0.92804 0.92685 0.92247 0.92362 0.92167 0.91871 0.92419 0.92760 0.92775 0.90358 0.92344 0.92662 0.92732 0.92641 0.92571 0.84774 0.94803 0.91884 0.93695 0.96946 0.92850 0.93656 0.96746 0.89443 0.93809 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.12 -1.01 5.93 -26.73 -0.16 -1.17 16 3 C -0.12 -1.11 5.21 -26.73 -0.14 -1.25 16 4 C -0.12 -1.12 5.21 -26.73 -0.14 -1.26 16 5 C -0.11 -1.22 5.10 -26.73 -0.14 -1.35 16 6 C -0.10 -1.08 4.89 -26.73 -0.13 -1.21 16 7 C 0.08 0.98 2.40 -67.71 -0.16 0.82 16 8 H 0.07 1.00 7.10 -51.93 -0.37 0.63 16 9 C -0.18 -2.01 9.15 37.16 0.34 -1.67 16 10 N -0.68 -9.54 5.51 -99.69 -0.55 -10.09 16 11 C 0.10 1.65 2.27 -67.67 -0.15 1.50 16 12 C -0.11 -2.09 5.57 -26.61 -0.15 -2.24 16 13 C 0.14 3.13 6.52 -3.72 -0.02 3.10 16 14 N -0.59 -15.12 2.99 -172.32 -0.52 -15.64 16 15 C -0.25 -6.99 9.58 -15.06 -0.14 -7.13 16 16 H 0.06 1.76 7.88 -52.49 -0.41 1.35 16 17 C 0.00 0.02 4.92 -17.43 -0.09 -0.06 16 18 N -0.91 -26.60 11.19 55.49 0.62 -25.98 16 19 Si 0.90 21.97 29.59 -169.99 -5.03 16.94 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 C 0.17 4.21 5.30 -3.71 -0.02 4.19 16 24 C -0.14 -2.71 5.36 -26.61 -0.14 -2.85 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.08 1.01 7.75 -51.93 -0.40 0.61 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.56 8.13 -51.93 -0.42 0.14 16 39 H 0.05 0.68 7.42 -51.93 -0.39 0.30 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.33 4.48 8.07 -39.29 -0.32 4.16 16 42 H 0.03 0.61 7.11 -51.93 -0.37 0.24 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.04 0.74 7.41 -51.92 -0.38 0.35 16 45 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 46 H 0.05 1.14 7.93 -51.93 -0.41 0.72 16 47 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 48 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.09 2.37 6.06 -51.93 -0.31 2.05 16 50 H 0.04 0.76 8.10 -51.93 -0.42 0.34 16 51 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 387.64 15.07 5.84 5.84 Total: -1.00 -28.48 387.64 -11.04 -39.53 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -10.53 Total: 0.78 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -0.88 Total: -11.38 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.44 Total: -51.70 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.48 -11.04 -39.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765856278.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.400 kcal (2) G-P(sol) polarization free energy of solvation -28.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds