Wall clock time and date at job start Tue Mar 31 2020 05:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46899 * 109.46902 * 2 1 4 4 C 1.46896 * 111.00427 * 283.99709 * 3 2 1 5 5 C 1.50702 * 109.46990 * 84.88412 * 4 3 2 6 6 O 1.21277 * 120.00272 * 7.07900 * 5 4 3 7 7 N 1.34779 * 120.00020 * 187.09065 * 5 4 3 8 8 C 1.46499 * 119.99778 * 179.97438 * 7 5 4 9 9 C 1.50707 * 109.46651 * 179.97438 * 8 7 5 10 10 H 1.07999 * 120.00276 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99556 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00582 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99849 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47006 * 59.99651 * 13 11 9 15 15 H 1.48501 * 109.46957 * 299.99955 * 13 11 9 16 16 H 1.48499 * 109.47063 * 180.02562 * 13 11 9 17 17 C 1.46897 * 111.00159 * 160.04118 * 3 2 1 18 18 H 1.09000 * 109.47427 * 173.38579 * 17 3 2 19 19 C 1.53005 * 109.46990 * 53.38896 * 17 3 2 20 20 C 1.52997 * 109.47315 * 179.97438 * 19 17 3 21 21 C 1.53004 * 109.47080 * 60.00391 * 20 19 17 22 22 C 1.53001 * 109.47039 * 299.99821 * 21 20 19 23 23 C 1.52998 * 109.47563 * 293.39533 * 17 3 2 24 24 H 1.09000 * 109.47528 * 59.99107 * 23 17 3 25 25 C 1.53001 * 109.46759 * 299.99547 * 23 17 3 26 26 H 1.09001 * 109.47290 * 188.10984 * 1 2 3 27 27 H 1.08996 * 109.47317 * 308.11428 * 1 2 3 28 28 H 1.08999 * 109.47233 * 68.11563 * 1 2 3 29 29 H 1.09001 * 109.47460 * 240.00482 * 2 1 3 30 30 H 1.08994 * 109.47229 * 119.99918 * 2 1 3 31 31 H 1.09004 * 109.47329 * 324.88713 * 4 3 2 32 32 H 1.09000 * 109.47571 * 204.87936 * 4 3 2 33 33 H 0.97001 * 119.99765 * 359.97438 * 7 5 4 34 34 H 1.08998 * 109.47631 * 59.99965 * 8 7 5 35 35 H 1.08995 * 109.47546 * 299.99085 * 8 7 5 36 36 H 0.97002 * 119.99161 * 0.02562 * 12 11 9 37 37 H 1.08994 * 109.47439 * 300.00282 * 19 17 3 38 38 H 1.09009 * 109.46852 * 60.00065 * 19 17 3 39 39 H 1.09003 * 109.47504 * 300.00463 * 20 19 17 40 40 H 1.09003 * 109.47179 * 179.97438 * 20 19 17 41 41 H 1.08999 * 109.47402 * 179.97438 * 21 20 19 42 42 H 1.09003 * 109.46893 * 59.99698 * 21 20 19 43 43 H 1.08993 * 109.47153 * 300.00472 * 22 21 20 44 44 H 1.08997 * 109.47120 * 179.97438 * 22 21 20 45 45 H 1.08999 * 109.47262 * 59.99729 * 25 23 17 46 46 H 1.08998 * 109.47539 * 180.02562 * 25 23 17 47 47 H 1.09003 * 109.47178 * 299.99810 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8823 1.9920 -1.3306 5 6 0.4910 2.5493 -1.4874 6 8 -0.2657 2.5666 -0.5398 7 7 0.0875 3.0284 -2.6808 8 6 -1.2653 3.5697 -2.8333 9 6 -1.4626 4.0360 -4.2528 10 1 -0.6605 3.9393 -4.9694 11 6 -2.6673 4.5862 -4.6364 12 7 -3.6443 4.7036 -3.7639 13 14 -2.9122 5.1636 -6.3961 14 1 -2.7296 4.0178 -7.3229 15 1 -1.9180 6.2201 -6.7132 16 1 -4.2833 5.7124 -6.5506 17 6 3.4104 1.4517 0.4681 18 1 3.7859 2.4679 0.3478 19 6 4.2714 0.4893 -0.3525 20 6 5.7201 0.5593 0.1346 21 6 5.7811 0.1650 1.6117 22 6 4.9201 1.1274 2.4323 23 6 3.4710 1.0571 1.9451 24 1 3.0954 0.0409 2.0654 25 6 2.6100 2.0194 2.7658 26 1 -0.3634 -1.0174 0.1450 27 1 -0.3634 0.6343 0.8085 28 1 -0.3633 0.3830 -0.9536 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.0589 1.2353 -2.0952 32 1 2.6102 2.7959 -1.4402 33 1 0.6928 3.0148 -3.4387 34 1 -1.3990 4.4109 -2.1530 35 1 -1.9953 2.7946 -2.6005 36 1 -3.5172 4.4035 -2.8503 37 1 3.8959 -0.5268 -0.2323 38 1 4.2283 0.7705 -1.4049 39 1 6.0954 1.5755 0.0140 40 1 6.3334 -0.1267 -0.4498 41 1 6.8132 0.2144 1.9586 42 1 5.4058 -0.8513 1.7322 43 1 5.2953 2.1435 2.3117 44 1 4.9632 0.8462 3.4846 45 1 1.5780 1.9700 2.4185 46 1 2.6534 1.7387 3.8181 47 1 2.9855 3.0357 2.6455 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781924905.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:54 Heat of formation + Delta-G solvation = -61.491115 kcal Electronic energy + Delta-G solvation = -23441.495664 eV Core-core repulsion = 20236.995094 eV Total energy + Delta-G solvation = -3204.500570 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.16574 -38.55406 -35.88926 -34.25055 -32.70118 -32.37553 -31.03920 -29.75695 -27.45096 -26.17893 -25.17010 -23.04640 -22.69057 -21.53160 -21.07175 -19.56560 -19.16202 -17.42397 -16.52146 -15.89963 -15.51779 -15.02486 -14.77816 -14.50677 -14.32568 -14.02065 -13.73690 -13.62411 -13.28401 -12.97502 -12.57200 -12.47061 -12.31763 -12.17945 -12.09713 -11.88272 -11.67181 -11.47938 -11.41565 -11.06511 -11.01357 -10.95614 -10.80346 -10.69797 -10.44634 -10.29833 -10.16147 -10.14429 -9.04044 -8.75950 -8.63741 -8.09711 -7.90106 -6.49653 -4.22849 3.38003 3.39875 3.42393 3.58711 3.62199 4.34121 4.42826 4.49048 4.54697 4.72464 4.88690 4.95294 5.10152 5.22771 5.24837 5.26537 5.29380 5.30478 5.37343 5.46178 5.53790 5.58011 5.63014 5.66832 5.74456 5.79846 5.84745 5.85279 5.89988 6.00060 6.03875 6.08811 6.14683 6.31748 6.35334 6.52598 6.77541 6.99367 7.13097 7.20883 7.27123 7.43070 7.71267 8.30056 8.54595 8.75884 9.13053 9.51289 10.90538 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031223 B = 0.003356 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.562131 B = 8340.752616 C = 8661.780452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.054 3.946 3 N -0.508 5.508 4 C 0.036 3.964 5 C 0.497 3.503 6 O -0.529 6.529 7 N -0.716 5.716 8 C 0.244 3.756 9 C -0.623 4.623 10 H 0.056 0.944 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 1.075 2.925 14 H -0.287 1.287 15 H -0.287 1.287 16 H -0.281 1.281 17 C 0.091 3.909 18 H 0.081 0.919 19 C -0.154 4.154 20 C -0.114 4.114 21 C -0.120 4.120 22 C -0.114 4.114 23 C -0.080 4.080 24 H 0.069 0.931 25 C -0.140 4.140 26 H 0.042 0.958 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.389 0.611 34 H 0.015 0.985 35 H 0.014 0.986 36 H 0.273 0.727 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.075 0.925 46 H 0.043 0.957 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.367 -9.927 8.905 23.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.073 4.073 3 N -0.230 5.230 4 C -0.095 4.095 5 C 0.281 3.719 6 O -0.406 6.406 7 N -0.365 5.365 8 C 0.122 3.878 9 C -0.661 4.661 10 H 0.074 0.926 11 C -0.184 4.184 12 N -0.537 5.537 13 Si 0.902 3.098 14 H -0.213 1.213 15 H -0.213 1.213 16 H -0.206 1.206 17 C -0.017 4.017 18 H 0.099 0.901 19 C -0.193 4.193 20 C -0.153 4.153 21 C -0.158 4.158 22 C -0.152 4.152 23 C -0.099 4.099 24 H 0.087 0.913 25 C -0.197 4.197 26 H 0.061 0.939 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.222 0.778 34 H 0.033 0.967 35 H 0.032 0.968 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.094 0.906 46 H 0.062 0.938 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 17.363 -8.935 8.899 21.459 hybrid contribution 2.006 -1.173 -0.041 2.324 sum 19.368 -10.108 8.858 23.575 Atomic orbital electron populations 1.21834 0.94047 0.99955 1.03994 1.22196 0.96917 0.88180 1.00022 1.61757 1.18780 1.18343 1.24146 1.22053 0.96753 0.99785 0.90935 1.20382 0.88799 0.79215 0.83478 1.90644 1.55282 1.55659 1.39007 1.46284 1.17588 1.61929 1.10744 1.19086 0.78233 0.93217 0.97234 1.22081 1.02403 1.46435 0.95188 0.92601 1.25868 0.91960 0.94420 1.06136 1.70760 1.33713 1.43615 1.05623 0.83460 0.76376 0.76371 0.73558 1.21326 1.21310 1.20568 1.21866 0.86542 0.99023 0.94302 0.90112 1.22314 0.96097 1.00949 0.99945 1.21466 0.96260 1.01526 0.96019 1.21549 0.99596 0.99430 0.95176 1.21621 0.94735 0.99712 0.99137 1.21150 0.94892 1.00073 0.93741 0.91275 1.21717 1.01584 0.98394 0.98021 0.93896 0.90759 0.92662 0.95196 0.90989 0.92231 0.88967 0.77834 0.96730 0.96773 0.91684 0.91616 0.92038 0.91979 0.92267 0.92204 0.92177 0.91931 0.91919 0.90640 0.93785 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.47 37.16 0.31 -1.88 16 2 C 0.05 0.70 4.27 -3.83 -0.02 0.69 16 3 N -0.51 -6.88 3.18 -228.09 -0.73 -7.61 16 4 C 0.04 0.52 4.71 -4.98 -0.02 0.50 16 5 C 0.50 9.82 6.43 -10.98 -0.07 9.75 16 6 O -0.53 -12.32 13.54 5.56 0.08 -12.24 16 7 N -0.72 -15.21 5.55 -61.47 -0.34 -15.55 16 8 C 0.24 6.49 4.74 -5.19 -0.02 6.46 16 9 C -0.62 -17.28 9.28 -34.44 -0.32 -17.60 16 10 H 0.06 1.47 7.60 -52.49 -0.40 1.07 16 11 C 0.02 0.62 5.46 -17.82 -0.10 0.53 16 12 N -0.90 -27.57 13.65 55.43 0.76 -26.82 16 13 Si 1.08 24.58 29.90 -169.99 -5.08 19.49 16 14 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 C 0.09 0.99 1.57 -67.71 -0.11 0.88 16 18 H 0.08 0.91 7.77 -51.93 -0.40 0.51 16 19 C -0.15 -1.42 4.57 -26.73 -0.12 -1.54 16 20 C -0.11 -0.90 5.92 -26.73 -0.16 -1.06 16 21 C -0.12 -0.90 5.92 -26.73 -0.16 -1.05 16 22 C -0.11 -0.94 5.21 -26.70 -0.14 -1.08 16 23 C -0.08 -0.80 2.09 -90.59 -0.19 -0.99 16 24 H 0.07 0.71 6.27 -51.93 -0.33 0.38 16 25 C -0.14 -1.58 9.04 37.16 0.34 -1.25 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 1.31 7.48 -51.93 -0.39 0.93 16 28 H 0.05 1.01 6.09 -51.93 -0.32 0.70 16 29 H 0.03 0.37 6.98 -51.93 -0.36 0.00 16 30 H 0.07 0.83 5.87 -51.93 -0.30 0.53 16 31 H 0.06 0.77 7.42 -51.93 -0.39 0.38 16 32 H 0.09 1.18 7.57 -51.93 -0.39 0.79 16 33 H 0.39 7.23 8.32 -40.82 -0.34 6.89 16 34 H 0.01 0.43 8.01 -51.93 -0.42 0.01 16 35 H 0.01 0.42 8.01 -51.93 -0.42 0.00 16 36 H 0.27 8.45 7.22 -40.82 -0.29 8.15 16 37 H 0.07 0.62 6.75 -51.93 -0.35 0.27 16 38 H 0.06 0.58 7.44 -51.92 -0.39 0.19 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 1.06 7.60 -51.93 -0.39 0.66 16 46 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 354.49 15.07 5.34 5.34 Total: -1.00 -31.49 354.49 -9.23 -40.72 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -8.48 Total: 4.31 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -0.78 Total: -7.64 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -0.31 Total: -49.98 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.08 Total: -12.24 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -5.08 Total: 19.49 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.49 -9.23 -40.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781924905.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.775 kcal (2) G-P(sol) polarization free energy of solvation -31.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds