Wall clock time and date at job start Tue Mar 31 2020 05:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46895 * 109.47399 * 2 1 4 4 C 1.46899 * 110.99968 * 65.73724 * 3 2 1 5 5 C 1.50705 * 109.46806 * 66.04693 * 4 3 2 6 6 O 1.21284 * 120.00124 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99871 * 179.97438 * 5 4 3 8 8 C 1.46494 * 119.99673 * 180.27702 * 7 5 4 9 9 C 1.50700 * 109.47018 * 179.72539 * 8 7 5 10 10 H 1.07997 * 120.00348 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00203 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00532 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99855 * 359.97438 * 11 9 8 14 14 H 1.48494 * 109.47181 * 90.00330 * 13 11 9 15 15 H 1.48500 * 109.47074 * 210.00162 * 13 11 9 16 16 H 1.48496 * 109.46920 * 329.99630 * 13 11 9 17 17 C 1.46903 * 111.00102 * 301.78834 * 3 2 1 18 18 H 1.09007 * 109.47055 * 65.41829 * 17 3 2 19 19 C 1.52997 * 109.47370 * 185.42062 * 17 3 2 20 20 C 1.53001 * 109.47121 * 179.97438 * 19 17 3 21 21 C 1.52994 * 109.47308 * 299.99863 * 20 19 17 22 22 C 1.53006 * 109.46878 * 60.00172 * 21 20 19 23 23 C 1.52993 * 109.47078 * 299.99804 * 22 21 20 24 24 H 1.09006 * 109.47229 * 179.97438 * 23 22 21 25 25 C 1.52998 * 109.47483 * 299.99962 * 23 22 21 26 26 H 1.08995 * 109.47386 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47332 * 300.05673 * 1 2 3 28 28 H 1.08998 * 109.47350 * 60.05584 * 1 2 3 29 29 H 1.09005 * 109.46750 * 240.00475 * 2 1 3 30 30 H 1.09001 * 109.46971 * 120.00353 * 2 1 3 31 31 H 1.09000 * 109.47306 * 306.04862 * 4 3 2 32 32 H 1.09000 * 109.47318 * 186.04551 * 4 3 2 33 33 H 0.96999 * 119.99993 * 0.02562 * 7 5 4 34 34 H 1.09001 * 109.47472 * 299.72371 * 8 7 5 35 35 H 1.09004 * 109.47458 * 59.72519 * 8 7 5 36 36 H 0.96995 * 120.00650 * 180.02562 * 12 11 9 37 37 H 1.08998 * 109.47042 * 300.00368 * 19 17 3 38 38 H 1.09000 * 109.46841 * 59.99930 * 19 17 3 39 39 H 1.09000 * 109.47196 * 60.00300 * 20 19 17 40 40 H 1.09005 * 109.46716 * 179.97438 * 20 19 17 41 41 H 1.08998 * 109.47167 * 179.97438 * 21 20 19 42 42 H 1.09000 * 109.47349 * 300.00344 * 21 20 19 43 43 H 1.09000 * 109.46990 * 59.99952 * 22 21 20 44 44 H 1.09004 * 109.47117 * 180.02562 * 22 21 20 45 45 H 1.08998 * 109.47505 * 179.97438 * 25 23 22 46 46 H 1.09004 * 109.47150 * 300.00054 * 25 23 22 47 47 H 1.09005 * 109.46963 * 60.00291 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6639 2.0691 1.2503 5 6 2.3987 1.4290 2.3998 6 8 3.1456 0.4951 2.1974 7 7 2.2266 1.8949 3.6527 8 6 2.9456 1.2765 4.7693 9 6 2.5853 1.9823 6.0512 10 1 1.8906 2.8090 6.0357 11 6 3.1433 1.5732 7.2438 12 7 2.8285 2.1887 8.3626 13 14 4.3455 0.1436 7.2707 14 1 5.7272 0.6553 7.0858 15 1 4.2486 -0.5601 8.5747 16 1 4.0162 -0.8007 6.1730 17 6 1.5141 2.1221 -1.1657 18 1 0.4310 2.2199 -1.0920 19 6 2.1503 3.5130 -1.2048 20 6 1.6241 4.2805 -2.4193 21 6 1.9821 3.5200 -3.6976 22 6 1.3459 2.1290 -3.6585 23 6 1.8721 1.3615 -2.4441 24 1 1.4184 0.3707 -2.4160 25 6 3.3924 1.2241 -2.5470 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5147 0.8895 28 1 -0.3634 0.5129 -0.8905 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 0.5896 1.9883 1.4157 32 1 1.9428 3.1206 1.1812 33 1 1.6296 2.6421 3.8146 34 1 2.6675 0.2252 4.8429 35 1 4.0193 1.3573 4.5995 36 1 3.2214 1.9012 9.2015 37 1 1.8957 4.0547 -0.2939 38 1 3.2334 3.4152 -1.2786 39 1 0.5410 4.3784 -2.3460 40 1 2.0771 5.2717 -2.4468 41 1 1.6069 4.0665 -4.5628 42 1 3.0653 3.4221 -3.7709 43 1 0.2628 2.2269 -3.5852 44 1 1.6013 1.5869 -4.5691 45 1 3.7673 0.6777 -1.6816 46 1 3.6474 0.6822 -3.4578 47 1 3.8457 2.2151 -2.5748 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781924906.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:57 Heat of formation + Delta-G solvation = -48.207989 kcal Electronic energy + Delta-G solvation = -23506.434770 eV Core-core repulsion = 20302.510199 eV Total energy + Delta-G solvation = -3203.924570 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.33833 -38.69932 -36.17903 -34.18275 -32.40634 -32.20137 -30.91190 -29.73599 -28.09533 -26.77337 -25.83165 -23.05149 -22.47471 -21.86708 -20.63974 -19.61859 -18.35078 -17.26369 -16.70296 -15.92437 -15.61474 -15.43434 -14.77123 -14.66937 -14.53225 -13.99006 -13.89114 -13.78420 -13.21454 -12.99322 -12.71028 -12.67982 -12.43343 -12.33205 -12.18886 -11.95261 -11.78419 -11.49187 -11.43877 -11.23874 -11.09931 -10.99531 -10.80035 -10.61090 -10.41585 -10.18592 -9.96427 -9.94133 -9.48154 -9.06421 -8.76218 -8.16143 -8.02910 -6.20613 -4.22672 3.26869 3.31487 3.34278 3.43056 3.63573 4.27697 4.34763 4.50091 4.54691 4.76084 5.02519 5.06913 5.14521 5.15604 5.17689 5.22404 5.27366 5.31773 5.34472 5.39867 5.46105 5.50042 5.54835 5.61583 5.69574 5.79121 5.87693 5.89612 5.91129 5.98155 5.99684 6.08314 6.15465 6.18598 6.30663 6.40699 6.51384 6.81911 7.09710 7.10162 7.23207 7.28577 7.42439 8.17158 8.55662 8.77331 9.01302 9.40012 10.91392 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030288 B = 0.003532 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.225757 B = 7924.771085 C = 8170.732102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.041 3.959 3 N -0.508 5.508 4 C 0.027 3.973 5 C 0.502 3.498 6 O -0.541 6.541 7 N -0.709 5.709 8 C 0.223 3.777 9 C -0.543 4.543 10 H 0.079 0.921 11 C 0.077 3.923 12 N -0.893 5.893 13 Si 0.877 3.123 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.261 1.261 17 C 0.089 3.911 18 H 0.041 0.959 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.121 4.121 22 C -0.113 4.113 23 C -0.084 4.084 24 H 0.070 0.930 25 C -0.143 4.143 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.395 0.605 34 H 0.023 0.977 35 H 0.020 0.980 36 H 0.267 0.733 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.070 0.930 46 H 0.042 0.958 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.915 1.522 -23.888 24.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.087 4.087 3 N -0.231 5.231 4 C -0.104 4.104 5 C 0.286 3.714 6 O -0.419 6.419 7 N -0.359 5.359 8 C 0.100 3.900 9 C -0.581 4.581 10 H 0.097 0.903 11 C -0.127 4.127 12 N -0.531 5.531 13 Si 0.704 3.296 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.185 1.185 17 C -0.019 4.019 18 H 0.059 0.941 19 C -0.156 4.156 20 C -0.155 4.155 21 C -0.159 4.159 22 C -0.151 4.151 23 C -0.103 4.103 24 H 0.088 0.912 25 C -0.200 4.200 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.115 0.885 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.228 0.772 34 H 0.041 0.959 35 H 0.038 0.962 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.089 0.911 46 H 0.062 0.938 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.813 0.826 -23.824 24.142 hybrid contribution -0.679 -0.220 0.430 0.833 sum -4.492 0.606 -23.394 23.829 Atomic orbital electron populations 1.22463 0.99005 1.02219 1.01534 1.22380 0.91897 0.90037 1.04386 1.61897 1.59181 1.01970 1.00072 1.22092 0.98573 0.99750 0.89945 1.20371 0.82856 0.84211 0.83913 1.90609 1.38106 1.28822 1.84375 1.46174 1.46849 1.36017 1.06835 1.19447 0.92132 0.94080 0.84307 1.21106 1.28867 1.18305 0.89805 0.90307 1.24801 0.96133 0.96525 0.95191 1.69879 1.43622 1.41029 0.98549 0.86809 0.81820 0.83062 0.77951 1.19839 1.20949 1.18512 1.21641 0.96593 0.93517 0.90135 0.94078 1.21706 1.01805 0.94407 0.97731 1.21506 1.00801 0.98547 0.94609 1.21579 1.01227 0.95707 0.97372 1.21564 0.99835 0.95944 0.97764 1.21150 0.97446 0.98517 0.93204 0.91156 1.21837 0.94647 1.02009 1.01517 0.92219 0.92655 0.92776 0.90642 0.88477 0.92169 0.88099 0.77217 0.95873 0.96218 0.92282 0.91910 0.90523 0.92299 0.91924 0.92427 0.91484 0.92364 0.91998 0.91098 0.93847 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.18 9.13 37.16 0.34 -1.84 16 2 C 0.04 0.54 5.10 -3.83 -0.02 0.52 16 3 N -0.51 -6.73 3.55 -228.08 -0.81 -7.54 16 4 C 0.03 0.38 5.12 -4.97 -0.03 0.36 16 5 C 0.50 9.50 7.50 -10.98 -0.08 9.41 16 6 O -0.54 -12.14 14.35 5.55 0.08 -12.06 16 7 N -0.71 -14.35 5.55 -61.47 -0.34 -14.70 16 8 C 0.22 5.50 4.50 -5.20 -0.02 5.48 16 9 C -0.54 -14.95 9.83 -34.44 -0.34 -15.29 16 10 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 11 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 12 N -0.89 -26.64 13.96 55.43 0.77 -25.86 16 13 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 14 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 17 C 0.09 0.94 1.04 -67.71 -0.07 0.87 16 18 H 0.04 0.43 6.59 -51.93 -0.34 0.09 16 19 C -0.12 -1.18 4.77 -26.73 -0.13 -1.30 16 20 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 21 C -0.12 -0.93 5.65 -26.73 -0.15 -1.08 16 22 C -0.11 -0.90 5.45 -26.73 -0.15 -1.05 16 23 C -0.08 -0.81 2.13 -90.62 -0.19 -1.00 16 24 H 0.07 0.69 6.12 -51.93 -0.32 0.37 16 25 C -0.14 -1.47 8.27 37.16 0.31 -1.16 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.66 6.42 -51.93 -0.33 0.33 16 28 H 0.05 0.55 6.28 -51.93 -0.33 0.22 16 29 H 0.08 0.93 6.11 -51.93 -0.32 0.61 16 30 H 0.10 1.62 5.81 -51.93 -0.30 1.31 16 31 H 0.06 0.76 6.20 -51.93 -0.32 0.44 16 32 H 0.10 1.25 5.88 -51.93 -0.31 0.95 16 33 H 0.39 7.03 8.32 -40.82 -0.34 6.69 16 34 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16 35 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 36 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.06 0.63 6.23 -51.93 -0.32 0.30 16 38 H 0.08 0.84 6.43 -51.93 -0.33 0.51 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.53 6.43 -51.93 -0.33 0.20 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.89 7.38 -51.93 -0.38 0.51 16 46 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.59 4.81 -51.93 -0.25 0.34 16 LS Contribution 342.43 15.07 5.16 5.16 Total: -1.00 -30.93 342.43 -8.43 -39.36 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -7.83 Total: 3.79 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -0.79 Total: -5.09 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: -0.38 Total: -48.10 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.08 Total: -12.06 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.93 -8.43 -39.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781924906.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.849 kcal (2) G-P(sol) polarization free energy of solvation -30.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds