Wall clock time and date at job start Tue Mar 31 2020 05:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46898 * 109.47498 * 2 1 4 4 C 1.46898 * 111.00158 * 68.52858 * 3 2 1 5 5 C 1.50699 * 109.46877 * 72.04246 * 4 3 2 6 6 O 1.21271 * 120.00515 * 5.61417 * 5 4 3 7 7 N 1.34784 * 119.99485 * 185.61630 * 5 4 3 8 8 C 1.46498 * 119.99795 * 180.02562 * 7 5 4 9 9 C 1.50695 * 109.47254 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00146 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00367 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99562 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00241 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.47065 * 89.99864 * 13 11 9 15 15 H 1.48502 * 109.47185 * 209.99608 * 13 11 9 16 16 H 1.48496 * 109.47204 * 330.00114 * 13 11 9 17 17 C 1.46900 * 110.99613 * 304.57330 * 3 2 1 18 18 H 1.08993 * 109.47398 * 69.10374 * 17 3 2 19 19 C 1.53002 * 109.47604 * 309.10275 * 17 3 2 20 20 C 1.52993 * 109.47739 * 179.97438 * 19 17 3 21 21 C 1.53003 * 109.47003 * 59.99949 * 20 19 17 22 22 C 1.53005 * 109.47266 * 300.00477 * 21 20 19 23 23 C 1.52998 * 109.47319 * 59.99543 * 22 21 20 24 24 H 1.08996 * 109.47271 * 179.97438 * 23 22 21 25 25 C 1.53008 * 109.46874 * 60.00104 * 23 22 21 26 26 H 1.09002 * 109.47110 * 301.47451 * 1 2 3 27 27 H 1.08998 * 109.47288 * 61.46448 * 1 2 3 28 28 H 1.08994 * 109.47482 * 181.47082 * 1 2 3 29 29 H 1.08998 * 109.47127 * 239.99524 * 2 1 3 30 30 H 1.09007 * 109.47004 * 119.99980 * 2 1 3 31 31 H 1.09002 * 109.46798 * 192.04147 * 4 3 2 32 32 H 1.08995 * 109.46814 * 312.03908 * 4 3 2 33 33 H 0.96996 * 119.99807 * 359.97438 * 7 5 4 34 34 H 1.09005 * 109.47252 * 299.99964 * 8 7 5 35 35 H 1.09003 * 109.47308 * 59.99774 * 8 7 5 36 36 H 0.97000 * 119.99959 * 180.02562 * 12 11 9 37 37 H 1.09003 * 109.46792 * 300.00575 * 19 17 3 38 38 H 1.09006 * 109.46692 * 59.99440 * 19 17 3 39 39 H 1.08993 * 109.47788 * 180.02562 * 20 19 17 40 40 H 1.09004 * 109.47110 * 300.00564 * 20 19 17 41 41 H 1.09005 * 109.47284 * 59.99887 * 21 20 19 42 42 H 1.08997 * 109.47254 * 180.02562 * 21 20 19 43 43 H 1.09006 * 109.46976 * 300.00090 * 22 21 20 44 44 H 1.08996 * 109.47067 * 180.02562 * 22 21 20 45 45 H 1.08998 * 109.47252 * 295.65854 * 25 23 22 46 46 H 1.09000 * 109.47101 * 55.66030 * 25 23 22 47 47 H 1.09001 * 109.46642 * 175.65900 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7220 2.0486 1.2762 5 6 2.6155 1.4898 2.3534 6 8 3.4891 0.6990 2.0669 7 7 2.4436 1.8690 3.6354 8 6 3.3125 1.3262 4.6825 9 6 2.9152 1.9060 6.0155 10 1 2.0975 2.6088 6.0766 11 6 3.5963 1.5400 7.1571 12 7 4.5924 0.6845 7.0827 13 14 3.1042 2.2592 8.8094 14 1 2.0787 1.3908 9.4416 15 1 4.2972 2.3380 9.6900 16 1 2.5452 3.6204 8.6100 17 6 1.4615 2.1406 -1.1293 18 1 0.3938 2.2933 -0.9720 19 6 1.6790 1.3567 -2.4250 20 6 1.0970 2.1434 -3.6011 21 6 1.7962 3.5005 -3.7026 22 6 1.5787 4.2846 -2.4069 23 6 2.1607 3.4978 -1.2308 24 1 2.0061 4.0565 -0.3078 25 6 3.6595 3.2839 -1.4521 26 1 -0.3633 0.5366 0.8765 27 1 -0.3634 0.4909 -0.9028 28 1 -0.3634 -1.0272 0.0264 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.8974 3.1200 1.1781 32 1 0.6794 1.8740 1.5420 33 1 1.7451 2.5018 3.8644 34 1 3.2109 0.2414 4.7129 35 1 4.3485 1.5882 4.4670 36 1 5.0713 0.4267 7.8859 37 1 2.7467 1.2039 -2.5823 38 1 1.1805 0.3899 -2.3528 39 1 1.2516 1.5847 -4.5241 40 1 0.0293 2.2957 -3.4434 41 1 2.8640 3.3482 -3.8602 42 1 1.3814 4.0612 -4.5402 43 1 0.5109 4.4368 -2.2493 44 1 2.0765 5.2515 -2.4795 45 1 3.8114 2.6601 -2.3329 46 1 4.1459 4.2479 -1.6013 47 1 4.0889 2.7915 -0.5796 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781924908.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:00 Heat of formation + Delta-G solvation = -52.873806 kcal Electronic energy + Delta-G solvation = -23471.823905 eV Core-core repulsion = 20267.697010 eV Total energy + Delta-G solvation = -3204.126895 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.25393 -38.49283 -36.17814 -34.04357 -32.40232 -32.22941 -30.35694 -29.97947 -27.68549 -26.59540 -25.52685 -23.46236 -22.46416 -21.91577 -20.54374 -19.43530 -18.32729 -17.05881 -16.63465 -15.87482 -15.43684 -15.28764 -14.68631 -14.58740 -14.49212 -13.98058 -13.83626 -13.66408 -13.14144 -13.07454 -12.69898 -12.46172 -12.20200 -12.16084 -11.88659 -11.80909 -11.65585 -11.49095 -11.31543 -11.18081 -11.02258 -10.95488 -10.87784 -10.65558 -10.38004 -10.29202 -10.16559 -9.90153 -9.36644 -8.92277 -8.70072 -8.03378 -7.79164 -6.14441 -4.21102 3.25072 3.31158 3.33622 3.49441 3.71231 4.28930 4.46759 4.54226 4.61152 4.80220 5.06539 5.10363 5.16990 5.21426 5.21792 5.23487 5.31149 5.36731 5.37891 5.44019 5.51536 5.53417 5.61513 5.71603 5.77474 5.84485 5.87624 5.91324 5.96621 6.02407 6.03753 6.08666 6.22896 6.24713 6.32391 6.42840 6.61457 7.12232 7.26666 7.38046 7.51993 7.56566 7.72075 8.00603 8.70302 8.83788 9.21300 9.46063 10.95779 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030122 B = 0.003399 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.319457 B = 8236.099060 C = 8556.257404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.048 3.952 3 N -0.507 5.507 4 C 0.028 3.972 5 C 0.499 3.501 6 O -0.537 6.537 7 N -0.718 5.718 8 C 0.252 3.748 9 C -0.542 4.542 10 H 0.062 0.938 11 C 0.063 3.937 12 N -0.885 5.885 13 Si 0.903 3.097 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.273 1.273 17 C 0.091 3.909 18 H 0.040 0.960 19 C -0.118 4.118 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.113 4.113 23 C -0.086 4.086 24 H 0.068 0.932 25 C -0.140 4.140 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.058 0.942 33 H 0.388 0.612 34 H 0.025 0.975 35 H 0.026 0.974 36 H 0.265 0.735 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.042 0.958 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.423 5.057 -20.264 22.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.079 4.079 3 N -0.230 5.230 4 C -0.104 4.104 5 C 0.283 3.717 6 O -0.414 6.414 7 N -0.368 5.368 8 C 0.132 3.868 9 C -0.581 4.581 10 H 0.080 0.920 11 C -0.140 4.140 12 N -0.523 5.523 13 Si 0.730 3.270 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.198 1.198 17 C -0.017 4.017 18 H 0.058 0.942 19 C -0.156 4.156 20 C -0.154 4.154 21 C -0.159 4.159 22 C -0.151 4.151 23 C -0.105 4.105 24 H 0.086 0.914 25 C -0.198 4.198 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.220 0.780 34 H 0.043 0.957 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.062 0.938 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.100 4.357 -20.383 22.362 hybrid contribution -1.517 0.704 1.291 2.113 sum -9.617 5.061 -19.092 21.969 Atomic orbital electron populations 1.22489 0.98890 1.02252 1.01636 1.22228 0.91870 0.90033 1.03804 1.61837 1.58743 1.01773 1.00618 1.22111 0.97936 1.00103 0.90218 1.20321 0.85257 0.82630 0.83509 1.90645 1.34042 1.34588 1.82107 1.46461 1.36724 1.46367 1.07231 1.19047 0.89667 0.94568 0.83566 1.21239 1.17725 1.27412 0.91695 0.91983 1.24955 0.94723 0.94952 0.99419 1.69979 1.20743 1.32213 1.29362 0.86428 0.78073 0.79402 0.83077 1.20505 1.21011 1.19758 1.21616 0.95995 0.93430 0.90679 0.94198 1.21726 1.02427 0.98224 0.93184 1.21508 0.99704 0.96128 0.98087 1.21572 1.01151 0.95896 0.97233 1.21567 1.00522 0.98373 0.94641 1.21163 0.96603 0.94763 0.97927 0.91389 1.21799 0.94435 1.00599 1.02925 0.92663 0.92560 0.92200 0.90514 0.89613 0.88413 0.92409 0.78009 0.95732 0.95642 0.92484 0.90530 0.91702 0.92059 0.92386 0.91487 0.92472 0.92379 0.91914 0.92519 0.93850 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.17 8.98 37.16 0.33 -1.83 16 2 C 0.05 0.66 5.19 -3.83 -0.02 0.64 16 3 N -0.51 -7.02 3.49 -228.09 -0.80 -7.81 16 4 C 0.03 0.40 5.23 -4.98 -0.03 0.38 16 5 C 0.50 10.01 7.37 -10.98 -0.08 9.93 16 6 O -0.54 -12.96 15.18 5.56 0.08 -12.87 16 7 N -0.72 -15.25 5.55 -61.47 -0.34 -15.59 16 8 C 0.25 6.76 5.43 -5.20 -0.03 6.73 16 9 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 10 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 13 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 C 0.09 1.00 0.97 -67.71 -0.07 0.93 16 18 H 0.04 0.43 6.81 -51.93 -0.35 0.08 16 19 C -0.12 -1.16 4.19 -26.73 -0.11 -1.27 16 20 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 21 C -0.12 -0.97 5.65 -26.73 -0.15 -1.12 16 22 C -0.11 -0.98 5.45 -26.73 -0.15 -1.12 16 23 C -0.09 -0.91 2.53 -90.62 -0.23 -1.14 16 24 H 0.07 0.75 6.25 -51.93 -0.32 0.43 16 25 C -0.14 -1.64 8.27 37.16 0.31 -1.33 16 26 H 0.05 0.65 6.37 -51.93 -0.33 0.32 16 27 H 0.06 0.56 5.88 -51.93 -0.31 0.26 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.97 6.49 -51.93 -0.34 0.63 16 30 H 0.09 1.44 6.55 -51.92 -0.34 1.10 16 31 H 0.10 1.29 5.89 -51.93 -0.31 0.98 16 32 H 0.06 0.76 6.14 -51.93 -0.32 0.44 16 33 H 0.39 7.07 8.32 -40.82 -0.34 6.73 16 34 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.08 0.83 6.34 -51.93 -0.33 0.50 16 38 H 0.06 0.63 5.64 -51.93 -0.29 0.34 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.56 6.53 -51.93 -0.34 0.22 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.63 4.82 -51.93 -0.25 0.38 16 46 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 1.04 7.74 -51.93 -0.40 0.64 16 LS Contribution 347.23 15.07 5.23 5.23 Total: -1.00 -31.21 347.23 -8.80 -40.01 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -7.91 Total: 4.44 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -0.79 Total: -3.78 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -0.40 Total: -48.97 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.08 Total: -12.87 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.21 -8.80 -40.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781924908.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.863 kcal (2) G-P(sol) polarization free energy of solvation -31.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds