Wall clock time and date at job start Tue Mar 31 2020 05:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46900 * 109.47075 * 2 1 4 4 C 1.46904 * 111.00032 * 195.11185 * 3 2 1 5 5 C 1.50702 * 109.46762 * 66.04670 * 4 3 2 6 6 O 1.21274 * 120.00404 * 359.97438 * 5 4 3 7 7 N 1.34783 * 119.99394 * 179.97438 * 5 4 3 8 8 C 1.46504 * 119.99377 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.46967 * 180.02562 * 8 7 5 10 10 H 1.08005 * 119.99597 * 359.97438 * 9 8 7 11 11 C 1.37871 * 119.99989 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00114 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99841 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47075 * 269.99907 * 13 11 9 15 15 H 1.48493 * 109.47019 * 30.00329 * 13 11 9 16 16 H 1.48504 * 109.46829 * 150.00168 * 13 11 9 17 17 C 1.46897 * 110.99867 * 71.16108 * 3 2 1 18 18 H 1.09001 * 109.47144 * 312.29258 * 17 3 2 19 19 C 1.53001 * 109.47423 * 72.29483 * 17 3 2 20 20 C 1.53000 * 109.47343 * 179.97438 * 19 17 3 21 21 C 1.53005 * 109.46919 * 299.99935 * 20 19 17 22 22 C 1.53001 * 109.47055 * 60.00453 * 21 20 19 23 23 C 1.53000 * 109.46887 * 299.99567 * 22 21 20 24 24 H 1.09001 * 109.47155 * 300.00467 * 23 22 21 25 25 C 1.53001 * 109.47343 * 180.02562 * 23 22 21 26 26 H 1.08998 * 109.47176 * 174.42456 * 1 2 3 27 27 H 1.09009 * 109.47222 * 294.42350 * 1 2 3 28 28 H 1.08999 * 109.47564 * 54.42116 * 1 2 3 29 29 H 1.09000 * 109.47083 * 239.99958 * 2 1 3 30 30 H 1.09003 * 109.47556 * 120.00174 * 2 1 3 31 31 H 1.09005 * 109.47303 * 306.05031 * 4 3 2 32 32 H 1.08999 * 109.47354 * 186.04863 * 4 3 2 33 33 H 0.96994 * 120.00703 * 359.97438 * 7 5 4 34 34 H 1.09005 * 109.46989 * 60.00178 * 8 7 5 35 35 H 1.08999 * 109.47288 * 300.00242 * 8 7 5 36 36 H 0.96994 * 120.00199 * 0.02562 * 12 11 9 37 37 H 1.08997 * 109.47098 * 300.00606 * 19 17 3 38 38 H 1.09003 * 109.46831 * 60.00202 * 19 17 3 39 39 H 1.08999 * 109.47225 * 180.02562 * 20 19 17 40 40 H 1.08991 * 109.47214 * 59.99988 * 20 19 17 41 41 H 1.08991 * 109.47220 * 300.00049 * 21 20 19 42 42 H 1.08997 * 109.47123 * 179.97438 * 21 20 19 43 43 H 1.08997 * 109.47094 * 179.97438 * 22 21 20 44 44 H 1.08994 * 109.47123 * 59.99302 * 22 21 20 45 45 H 1.08999 * 109.46800 * 294.69816 * 25 23 22 46 46 H 1.08998 * 109.46833 * 54.69735 * 25 23 22 47 47 H 1.08995 * 109.47196 * 174.70265 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4434 1.4400 -0.3575 5 6 3.6197 0.9974 -1.7873 6 8 2.6545 0.6681 -2.4436 7 7 4.8501 0.9675 -2.3365 8 6 5.0214 0.5378 -3.7266 9 6 6.4821 0.5941 -4.0934 10 1 7.2098 0.9181 -3.3641 11 6 6.8892 0.2321 -5.3599 12 7 6.0030 -0.1629 -6.2478 13 14 8.6997 0.3026 -5.8148 14 1 9.0200 1.6443 -6.3647 15 1 9.5240 0.0537 -4.6050 16 1 8.9941 -0.7343 -6.8363 17 6 1.7775 2.0289 1.2980 18 1 0.7487 1.8460 1.6081 19 6 2.7353 1.4498 2.3412 20 6 2.4836 2.1209 3.6929 21 6 2.7183 3.6275 3.5658 22 6 1.7604 4.2066 2.5227 23 6 2.0121 3.5355 1.1710 24 1 3.0410 3.7181 0.8606 25 6 1.0548 4.1150 0.1276 26 1 -0.3633 -1.0228 -0.0998 27 1 -0.3634 0.4249 0.9358 28 1 -0.3634 0.5979 -0.8358 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 4.0089 0.7793 0.2997 32 1 3.8068 2.4615 -0.2460 33 1 5.6221 1.2313 -1.8118 34 1 4.4557 1.1986 -4.3835 35 1 4.6582 -0.4838 -3.8385 36 1 5.0629 -0.1991 -6.0118 37 1 2.5685 0.3764 2.4313 38 1 3.7641 1.6328 2.0310 39 1 3.1662 1.7086 4.4359 40 1 1.4549 1.9383 4.0032 41 1 3.7470 3.8100 3.2555 42 1 2.5386 4.1057 4.5286 43 1 1.9273 5.2800 2.4325 44 1 0.7317 4.0240 2.8330 45 1 0.0299 3.8514 0.3889 46 1 1.1562 5.2000 0.1045 47 1 1.2961 3.7065 -0.8536 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781924909.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:02 Heat of formation + Delta-G solvation = -63.274023 kcal Electronic energy + Delta-G solvation = -23475.300604 eV Core-core repulsion = 20270.722721 eV Total energy + Delta-G solvation = -3204.577883 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.22418 -38.53307 -35.90905 -34.30482 -32.72483 -32.43280 -31.07978 -29.78993 -27.41824 -26.23522 -25.14846 -23.31506 -22.62414 -21.40290 -20.73134 -20.17122 -19.05143 -17.38913 -16.57512 -15.67035 -15.41626 -15.04971 -14.78489 -14.49804 -14.26290 -14.03248 -13.99280 -13.73148 -13.51238 -12.87386 -12.73446 -12.56790 -12.33184 -12.20425 -12.03058 -11.85889 -11.71371 -11.48879 -11.43177 -11.32811 -11.00896 -10.99183 -10.79225 -10.60875 -10.45254 -10.34205 -10.18326 -10.16740 -9.07435 -8.77250 -8.66447 -8.10071 -7.94004 -6.51175 -4.24640 3.33568 3.37286 3.40884 3.56248 3.66659 4.26230 4.44181 4.46877 4.57458 4.73144 4.90547 4.97728 5.19045 5.20329 5.27021 5.28016 5.28411 5.30669 5.36232 5.45453 5.55122 5.58379 5.60052 5.67901 5.69200 5.79380 5.83518 5.86500 5.91759 5.99035 6.02514 6.06745 6.14271 6.26877 6.34818 6.40062 6.48157 6.97552 7.13006 7.22933 7.24278 7.36320 7.68161 8.28095 8.49924 8.72968 9.04512 9.49427 10.89096 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022840 B = 0.003638 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.631411 B = 7694.730964 C = 8162.592592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.045 3.955 3 N -0.507 5.507 4 C 0.032 3.968 5 C 0.498 3.502 6 O -0.539 6.539 7 N -0.712 5.712 8 C 0.242 3.758 9 C -0.623 4.623 10 H 0.057 0.943 11 C 0.022 3.978 12 N -0.903 5.903 13 Si 1.078 2.922 14 H -0.286 1.286 15 H -0.288 1.288 16 H -0.282 1.282 17 C 0.089 3.911 18 H 0.085 0.915 19 C -0.157 4.157 20 C -0.113 4.113 21 C -0.121 4.121 22 C -0.113 4.113 23 C -0.083 4.083 24 H 0.068 0.932 25 C -0.137 4.137 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.026 0.974 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.391 0.609 34 H 0.016 0.984 35 H 0.015 0.985 36 H 0.273 0.727 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.049 0.951 46 H 0.044 0.956 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.687 6.259 20.859 23.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.082 4.082 3 N -0.230 5.230 4 C -0.099 4.099 5 C 0.282 3.718 6 O -0.416 6.416 7 N -0.361 5.361 8 C 0.120 3.880 9 C -0.661 4.661 10 H 0.075 0.925 11 C -0.183 4.183 12 N -0.537 5.537 13 Si 0.906 3.094 14 H -0.213 1.213 15 H -0.214 1.214 16 H -0.208 1.208 17 C -0.019 4.019 18 H 0.103 0.897 19 C -0.196 4.196 20 C -0.151 4.151 21 C -0.158 4.158 22 C -0.151 4.151 23 C -0.102 4.102 24 H 0.087 0.913 25 C -0.195 4.195 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.223 0.777 34 H 0.034 0.966 35 H 0.033 0.967 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.589 5.979 18.732 21.077 hybrid contribution -0.166 -0.043 2.186 2.193 sum -7.755 5.936 20.918 23.086 Atomic orbital electron populations 1.21691 0.95112 1.01247 1.01649 1.22222 0.96177 0.88555 1.01268 1.61890 1.15004 1.17877 1.28253 1.22041 0.90628 1.02561 0.94675 1.20420 0.83776 0.78928 0.88638 1.90630 1.39197 1.48524 1.63295 1.46278 1.07297 1.66458 1.16048 1.19127 0.97363 0.94534 0.76926 1.22097 0.91701 1.51239 1.01086 0.92505 1.25871 1.06904 0.93182 0.92389 1.70725 1.03771 1.42670 1.36579 0.83416 0.73349 0.76964 0.75712 1.21263 1.21393 1.20792 1.21843 0.99306 0.93795 0.86986 0.89695 1.22282 1.00893 1.00201 0.96185 1.21446 1.01476 0.95439 0.96750 1.21555 0.99871 0.95537 0.98857 1.21600 0.99478 0.99509 0.94523 1.21154 1.00320 0.93658 0.95028 0.91343 1.21686 0.98637 0.99185 0.99945 0.92762 0.93633 0.91539 0.89026 0.95548 0.92414 0.88353 0.77661 0.96603 0.96714 0.91656 0.91901 0.91539 0.92260 0.92123 0.92018 0.92204 0.91886 0.92043 0.93210 0.93663 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.85 37.15 0.37 -1.36 16 2 C 0.05 0.64 5.16 -3.83 -0.02 0.62 16 3 N -0.51 -6.98 3.47 -228.08 -0.79 -7.78 16 4 C 0.03 0.47 4.32 -4.97 -0.02 0.44 16 5 C 0.50 9.89 7.40 -10.98 -0.08 9.81 16 6 O -0.54 -12.71 14.46 5.56 0.08 -12.62 16 7 N -0.71 -15.11 5.55 -61.47 -0.34 -15.45 16 8 C 0.24 6.43 4.74 -5.19 -0.02 6.40 16 9 C -0.62 -17.22 9.28 -34.44 -0.32 -17.54 16 10 H 0.06 1.49 7.60 -52.48 -0.40 1.09 16 11 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 12 N -0.90 -27.50 13.65 55.43 0.76 -26.74 16 13 Si 1.08 24.54 29.90 -169.99 -5.08 19.46 16 14 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.29 -6.16 7.11 56.52 0.40 -5.75 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 C 0.09 0.97 1.53 -67.71 -0.10 0.86 16 18 H 0.09 0.92 6.40 -51.93 -0.33 0.59 16 19 C -0.16 -1.51 4.44 -26.73 -0.12 -1.63 16 20 C -0.11 -0.91 5.92 -26.73 -0.16 -1.07 16 21 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 22 C -0.11 -0.95 5.20 -26.73 -0.14 -1.08 16 23 C -0.08 -0.85 2.10 -90.62 -0.19 -1.04 16 24 H 0.07 0.75 6.45 -51.93 -0.33 0.41 16 25 C -0.14 -1.54 8.96 37.16 0.33 -1.20 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.04 0.49 6.75 -51.92 -0.35 0.14 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.09 1.60 5.80 -51.93 -0.30 1.30 16 30 H 0.03 0.34 6.40 -51.93 -0.33 0.00 16 31 H 0.06 0.76 6.83 -51.93 -0.35 0.40 16 32 H 0.10 1.29 6.20 -51.93 -0.32 0.97 16 33 H 0.39 7.22 8.32 -40.82 -0.34 6.88 16 34 H 0.02 0.47 8.01 -51.93 -0.42 0.05 16 35 H 0.01 0.43 8.01 -51.93 -0.42 0.02 16 36 H 0.27 8.43 7.22 -40.82 -0.29 8.13 16 37 H 0.06 0.63 6.60 -51.93 -0.34 0.29 16 38 H 0.07 0.67 6.54 -51.93 -0.34 0.33 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.98 7.77 -51.93 -0.40 0.57 16 LS Contribution 354.95 15.07 5.35 5.35 Total: -1.00 -31.43 354.95 -9.07 -40.49 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -8.30 Total: 4.65 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -0.73 Total: -7.36 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.38 Total: -49.97 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.08 Total: -12.62 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -5.08 Total: 19.46 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.43 -9.07 -40.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781924909.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.780 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds