Wall clock time and date at job start Tue Mar 31 2020 05:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47465 * 2 1 4 4 C 1.53004 * 109.47194 * 119.99981 * 2 1 3 5 5 C 1.52994 * 109.47175 * 64.99557 * 4 2 1 6 6 N 1.46903 * 109.47058 * 178.09283 * 5 4 2 7 7 C 1.46902 * 111.00093 * 287.87241 * 6 5 4 8 8 C 1.50699 * 109.47396 * 298.24465 * 7 6 5 9 9 H 1.07999 * 119.99761 * 4.81544 * 8 7 6 10 10 C 1.37876 * 120.00162 * 184.81906 * 8 7 6 11 11 N 1.31511 * 119.99678 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00028 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47103 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.47194 * 119.99829 * 12 10 8 15 15 H 1.48494 * 109.47227 * 239.99539 * 12 10 8 16 16 C 1.46907 * 111.00086 * 163.92171 * 6 5 4 17 17 C 1.52992 * 109.46960 * 189.99954 * 16 6 5 18 18 C 1.53124 * 109.51989 * 184.99996 * 17 16 6 19 19 C 1.53045 * 109.27562 * 182.44049 * 18 17 16 20 20 N 1.46840 * 109.52411 * 59.17972 * 19 18 17 21 21 C 1.46896 * 111.00215 * 174.15639 * 20 19 18 22 22 C 1.46849 * 111.20118 * 298.25815 * 20 19 18 23 23 C 1.53034 * 109.52385 * 61.73714 * 22 20 19 24 24 H 1.08992 * 109.46752 * 59.99547 * 1 2 3 25 25 H 1.08997 * 109.46953 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46754 * 300.00224 * 1 2 3 27 27 H 1.08998 * 109.47331 * 239.99373 * 2 1 3 28 28 H 1.09000 * 109.47201 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46753 * 299.99900 * 3 2 1 30 30 H 1.08996 * 109.47574 * 59.99880 * 3 2 1 31 31 H 1.09004 * 109.47271 * 304.99610 * 4 2 1 32 32 H 1.08999 * 109.47136 * 185.00064 * 4 2 1 33 33 H 1.08997 * 109.47232 * 58.09635 * 5 4 2 34 34 H 1.08996 * 109.47428 * 298.09343 * 5 4 2 35 35 H 1.09001 * 109.46866 * 58.24310 * 7 6 5 36 36 H 1.08995 * 109.47506 * 178.23685 * 7 6 5 37 37 H 0.97000 * 119.99645 * 180.02562 * 11 10 8 38 38 H 1.09000 * 109.47101 * 69.99942 * 16 6 5 39 39 H 1.08993 * 109.46843 * 310.00333 * 16 6 5 40 40 H 1.08999 * 109.57671 * 305.15771 * 17 16 6 41 41 H 1.08997 * 109.50413 * 62.50430 * 18 17 16 42 42 H 1.08992 * 109.50204 * 302.37645 * 18 17 16 43 43 H 1.09002 * 109.46189 * 299.15964 * 19 18 17 44 44 H 1.09004 * 109.45500 * 179.19589 * 19 18 17 45 45 H 1.09005 * 109.46734 * 59.99995 * 21 20 19 46 46 H 1.09000 * 109.47111 * 300.00508 * 21 20 19 47 47 H 1.09003 * 109.47444 * 179.97438 * 21 20 19 48 48 H 1.08998 * 109.46512 * 181.75692 * 22 20 19 49 49 H 1.09005 * 109.45465 * 301.72498 * 22 20 19 50 50 H 1.08993 * 109.50527 * 180.88103 * 23 22 20 51 51 H 1.09007 * 109.53325 * 60.78568 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1954 1.1881 6 7 2.1640 -2.8977 2.3651 7 6 3.6204 -3.0639 2.2687 8 6 3.9515 -3.9022 1.0610 9 1 3.1670 -4.2091 0.3851 10 6 5.2560 -4.2775 0.8189 11 7 6.2112 -3.9034 1.6417 12 14 5.6663 -5.3173 -0.6777 13 1 4.4230 -5.6032 -1.4377 14 1 6.6195 -4.5806 -1.5460 15 1 6.2826 -6.5950 -0.2388 16 6 1.4972 -4.1938 2.5484 17 6 1.8873 -4.7804 3.9065 18 6 1.2941 -6.1851 4.0465 19 6 1.6362 -6.7423 5.4302 20 7 1.0899 -5.8555 6.4652 21 6 1.2786 -6.4298 7.8040 22 6 1.6801 -4.5135 6.3803 23 6 1.3395 -3.8897 5.0250 24 1 -0.3632 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9562 -0.8900 30 1 1.6768 1.9564 0.8899 31 1 1.6055 -0.2617 2.1370 32 1 3.1263 -0.6443 1.2952 33 1 2.0416 -2.6465 0.2829 34 1 0.5481 -2.2735 1.1764 35 1 4.0921 -2.0860 2.1725 36 1 3.9898 -3.5586 3.1669 37 1 7.1290 -4.1671 1.4712 38 1 1.8050 -4.8760 1.7560 39 1 0.4168 -4.0553 2.5091 40 1 2.9733 -4.8343 3.9827 41 1 1.7132 -6.8353 3.2786 42 1 0.2114 -6.1360 3.9315 43 1 2.7190 -6.8041 5.5394 44 1 1.2031 -7.7368 5.5384 45 1 2.3430 -6.5719 7.9916 46 1 0.7680 -7.3911 7.8622 47 1 0.8655 -5.7526 8.5515 48 1 1.2790 -3.8891 7.1786 49 1 2.7627 -4.5857 6.4851 50 1 1.7908 -2.9000 4.9561 51 1 0.2574 -3.8040 4.9249 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788480563.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:07 Heat of formation + Delta-G solvation = -25.392298 kcal Electronic energy + Delta-G solvation = -23842.865607 eV Core-core repulsion = 20775.763494 eV Total energy + Delta-G solvation = -3067.102113 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.93104 -37.35251 -35.54008 -33.31394 -32.23485 -30.47958 -28.84816 -27.58267 -26.87278 -26.02576 -23.92442 -23.19479 -22.72485 -21.34266 -19.71468 -19.33136 -18.94817 -16.33731 -15.55954 -15.21998 -14.83440 -14.80098 -14.48684 -14.32391 -14.02816 -13.66220 -13.51776 -13.30282 -12.73334 -12.52277 -12.35707 -12.13626 -12.08985 -12.00768 -11.85417 -11.44932 -11.37315 -11.10233 -10.91244 -10.86965 -10.81209 -10.74493 -10.38910 -10.33012 -10.25570 -9.97665 -9.90090 -9.78857 -9.68679 -9.50058 -9.36473 -8.38718 -8.15889 -7.05513 -6.00125 -4.08020 3.25710 3.34406 3.37358 4.14031 4.41580 4.89824 5.16455 5.20472 5.26422 5.29542 5.31943 5.33711 5.37957 5.52633 5.58084 5.68623 5.78474 5.83497 5.84664 5.86197 5.92535 5.98480 6.03119 6.05330 6.11847 6.18359 6.19584 6.24035 6.29238 6.35017 6.41320 6.47545 6.47998 6.57853 6.62550 6.66147 6.79973 6.88687 6.96582 7.03669 7.08466 7.27046 7.30812 7.37012 7.59834 7.94698 8.16138 8.34716 8.41783 9.03066 9.57825 11.04278 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.010592 B = 0.005777 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.846475 B = 4845.633976 C = 6774.714903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.103 4.103 5 C 0.061 3.939 6 N -0.541 5.541 7 C 0.184 3.816 8 C -0.541 4.541 9 H 0.056 0.944 10 C 0.065 3.935 11 N -0.891 5.891 12 Si 0.883 3.117 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.072 3.928 17 C -0.081 4.081 18 C -0.109 4.109 19 C 0.058 3.942 20 N -0.544 5.544 21 C 0.025 3.975 22 C 0.054 3.946 23 C -0.097 4.097 24 H 0.045 0.955 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.043 0.957 34 H 0.048 0.952 35 H 0.027 0.973 36 H 0.035 0.965 37 H 0.260 0.740 38 H 0.040 0.960 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.032 0.968 44 H 0.067 0.933 45 H 0.022 0.978 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.067 0.933 49 H 0.031 0.969 50 H 0.078 0.922 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.448 1.173 5.149 11.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.201 4.201 4 C -0.141 4.141 5 C -0.068 4.068 6 N -0.264 5.264 7 C 0.059 3.941 8 C -0.580 4.580 9 H 0.074 0.926 10 C -0.137 4.137 11 N -0.530 5.530 12 Si 0.711 3.289 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.211 1.211 16 C -0.057 4.057 17 C -0.100 4.100 18 C -0.148 4.148 19 C -0.070 4.070 20 N -0.269 5.269 21 C -0.123 4.123 22 C -0.074 4.074 23 C -0.135 4.135 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.045 0.955 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.051 0.949 44 H 0.085 0.915 45 H 0.040 0.960 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.050 0.950 50 H 0.096 0.904 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.856 1.500 5.521 12.271 hybrid contribution 1.547 -1.285 -1.434 2.470 sum -9.309 0.215 4.086 10.169 Atomic orbital electron populations 1.21860 0.95947 1.01571 1.00786 1.21104 0.95257 0.95834 0.99434 1.21811 1.01106 0.96344 1.00858 1.21525 1.01523 0.95024 0.95995 1.21959 0.97238 0.93822 0.93769 1.62484 1.07749 1.18548 1.37628 1.19783 0.81769 0.96387 0.96179 1.21753 0.93007 1.33003 1.10227 0.92629 1.24923 0.96538 0.96009 0.96240 1.69950 1.00479 1.45886 1.36715 0.86679 0.78403 0.80362 0.83423 1.19913 1.21022 1.21068 1.21861 0.96312 0.91622 0.95875 1.21147 1.01038 0.93057 0.94785 1.21593 1.01032 0.97088 0.95067 1.22072 0.97223 0.95603 0.92095 1.61975 1.58623 1.03134 1.03167 1.22329 0.99143 1.00051 0.90800 1.22174 0.96781 0.89323 0.99085 1.21486 1.00750 0.99274 0.91997 0.93626 0.92572 0.93029 0.91484 0.92709 0.93453 0.93037 0.92497 0.91436 0.93889 0.93391 0.95503 0.94747 0.93021 0.94146 0.93474 0.90391 0.91675 0.91765 0.94936 0.91463 0.95982 0.91799 0.91727 0.91497 0.95045 0.90379 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.95 37.16 0.33 -1.50 16 2 C -0.10 -1.42 2.92 -90.62 -0.26 -1.68 16 3 C -0.14 -1.87 9.19 37.16 0.34 -1.52 16 4 C -0.10 -1.77 4.77 -26.73 -0.13 -1.90 16 5 C 0.06 1.15 4.52 -3.83 -0.02 1.13 16 6 N -0.54 -11.11 4.19 -236.08 -0.99 -12.10 16 7 C 0.18 4.57 4.77 -4.98 -0.02 4.55 16 8 C -0.54 -14.46 7.33 -34.44 -0.25 -14.71 16 9 H 0.06 1.50 5.96 -52.49 -0.31 1.18 16 10 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 11 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 12 Si 0.88 21.34 29.54 -169.99 -5.02 16.32 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 16 C 0.07 1.37 4.16 -3.82 -0.02 1.35 16 17 C -0.08 -1.44 2.18 -90.50 -0.20 -1.64 16 18 C -0.11 -1.69 5.38 -26.64 -0.14 -1.84 16 19 C 0.06 0.83 5.46 -3.83 -0.02 0.81 16 20 N -0.54 -7.61 4.91 -242.96 -1.19 -8.80 16 21 C 0.03 0.29 9.59 60.06 0.58 0.86 16 22 C 0.05 0.79 5.46 -3.83 -0.02 0.77 16 23 C -0.10 -1.55 5.24 -26.65 -0.14 -1.69 16 24 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.73 6.61 -51.93 -0.34 0.39 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 1.34 6.67 -51.93 -0.35 0.99 16 33 H 0.04 0.92 6.20 -51.93 -0.32 0.60 16 34 H 0.05 0.83 6.32 -51.93 -0.33 0.50 16 35 H 0.03 0.72 6.61 -51.93 -0.34 0.38 16 36 H 0.03 0.93 6.28 -51.93 -0.33 0.60 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 38 H 0.04 0.86 6.54 -51.93 -0.34 0.52 16 39 H 0.05 0.83 7.86 -51.93 -0.41 0.42 16 40 H 0.08 1.64 6.29 -51.93 -0.33 1.32 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 45 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 48 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 49 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.08 1.34 7.84 -51.93 -0.41 0.94 16 51 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 378.38 15.07 5.70 5.70 Total: -1.00 -27.72 378.38 -10.95 -38.67 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -10.12 Total: 0.68 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -0.07 Total: -15.32 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: -1.44 Total: -46.05 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -27.72 -10.95 -38.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788480563.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.278 kcal (2) G-P(sol) polarization free energy of solvation -27.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds