Wall clock time and date at job start Tue Mar 31 2020 05:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46961 * 110.99947 * 2 1 4 4 C 1.53045 * 109.39387 * 183.15984 * 3 2 1 5 5 N 1.46971 * 109.37080 * 301.63196 * 4 3 2 6 6 C 1.46892 * 111.00071 * 183.13811 * 5 4 3 7 7 C 1.53001 * 109.47178 * 76.86100 * 6 5 4 8 8 H 1.09002 * 109.47254 * 53.51370 * 7 6 5 9 9 O 1.42902 * 109.47020 * 293.51614 * 7 6 5 10 10 C 1.50699 * 109.47453 * 173.51740 * 7 6 5 11 11 H 1.08000 * 120.00071 * 359.97438 * 10 7 6 12 12 C 1.37879 * 120.00066 * 179.97438 * 10 7 6 13 13 N 1.31510 * 119.99993 * 359.97438 * 12 10 7 14 14 Si 1.86801 * 119.99872 * 180.02562 * 12 10 7 15 15 H 1.48493 * 109.47230 * 59.99824 * 14 12 10 16 16 H 1.48494 * 109.46881 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46825 * 299.99758 * 14 12 10 18 18 C 1.46987 * 110.86817 * 59.28964 * 5 4 3 19 19 C 1.53003 * 109.46674 * 60.56316 * 18 5 4 20 20 C 1.53006 * 109.45058 * 180.17016 * 19 18 5 21 21 C 1.52995 * 109.45936 * 300.00340 * 20 19 18 22 22 C 1.53005 * 109.49627 * 59.99270 * 21 20 19 23 23 C 1.52970 * 109.56978 * 180.65295 * 18 5 4 24 24 C 1.46967 * 110.99697 * 123.78239 * 2 1 3 25 25 H 1.09005 * 109.46879 * 296.21796 * 1 2 3 26 26 H 1.09000 * 109.46904 * 56.21854 * 1 2 3 27 27 H 1.09002 * 109.47300 * 176.21921 * 1 2 3 28 28 H 1.08993 * 109.48488 * 303.13567 * 3 2 1 29 29 H 1.09001 * 109.48317 * 63.18820 * 3 2 1 30 30 H 1.09001 * 109.48889 * 61.59930 * 4 3 2 31 31 H 1.08998 * 109.48718 * 181.66307 * 4 3 2 32 32 H 1.09002 * 109.46965 * 196.85380 * 6 5 4 33 33 H 1.09000 * 109.47580 * 316.85511 * 6 5 4 34 34 H 0.96708 * 114.00088 * 300.00333 * 9 7 6 35 35 H 0.96998 * 120.00403 * 179.97438 * 13 12 10 36 36 H 1.09000 * 109.47063 * 300.16380 * 19 18 5 37 37 H 1.08997 * 109.47182 * 60.16931 * 19 18 5 38 38 H 1.08997 * 109.46786 * 180.02562 * 20 19 18 39 39 H 1.08996 * 109.47564 * 60.00118 * 20 19 18 40 40 H 1.09000 * 109.47007 * 299.98747 * 21 20 19 41 41 H 1.09001 * 109.46361 * 179.97438 * 21 20 19 42 42 H 1.08997 * 109.47127 * 180.02562 * 22 21 20 43 43 H 1.08997 * 109.46676 * 60.02257 * 22 21 20 44 44 H 1.08998 * 109.47141 * 299.90723 * 23 18 5 45 45 H 1.08999 * 109.47407 * 59.91472 * 23 18 5 46 46 H 1.08999 * 109.49778 * 296.77348 * 24 2 1 47 47 H 1.09001 * 109.49628 * 56.83196 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3299 -0.0796 5 7 4.0501 0.5664 1.0605 6 6 5.5190 0.5662 1.0604 7 6 6.0292 1.9158 1.5695 8 1 5.5743 2.1354 2.5354 9 8 5.6813 2.9397 0.6354 10 6 7.5277 1.8619 1.7206 11 1 8.0626 0.9556 1.4782 12 6 8.2157 2.9697 2.1683 13 7 7.5644 4.0735 2.4630 14 14 10.0732 2.9030 2.3549 15 1 10.6925 2.6037 1.0389 16 1 10.5684 4.2133 2.8480 17 1 10.4352 1.8392 3.3258 18 6 3.5234 -0.8058 1.0598 19 6 3.9459 -1.5136 -0.2292 20 6 3.3938 -2.9406 -0.2314 21 6 3.9468 -3.7029 0.9744 22 6 3.5250 -2.9948 2.2635 23 6 4.0766 -1.5676 2.2655 24 6 1.9956 -0.7629 1.1404 25 1 -0.3633 0.4540 0.9220 26 1 -0.3633 0.5714 -0.8542 27 1 -0.3634 -1.0254 -0.0678 28 1 1.6016 1.9127 -0.8604 29 1 1.6932 1.8775 0.9171 30 1 3.8260 0.8493 -1.0099 31 1 3.9172 2.3458 -0.0499 32 1 5.8823 -0.2286 1.7119 33 1 5.8824 0.3994 0.0464 34 1 6.0526 2.8090 -0.2480 35 1 8.0484 4.8528 2.7783 36 1 3.5519 -0.9701 -1.0880 37 1 5.0339 -1.5446 -0.2867 38 1 3.6951 -3.4452 -1.1493 39 1 2.3059 -2.9094 -0.1737 40 1 5.0349 -3.7342 0.9166 41 1 3.5532 -4.7193 0.9731 42 1 3.9195 -3.5380 3.1221 43 1 2.4370 -2.9640 2.3216 44 1 5.1646 -1.5984 2.2077 45 1 3.7756 -1.0629 3.1835 46 1 1.6938 -0.2816 2.0706 47 1 1.6011 -1.7787 1.1119 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809576841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:27 Heat of formation + Delta-G solvation = -43.923677 kcal Electronic energy + Delta-G solvation = -24702.305503 eV Core-core repulsion = 21498.566714 eV Total energy + Delta-G solvation = -3203.738789 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.44734 -36.67031 -36.26037 -34.06255 -32.09148 -30.93144 -30.34560 -29.46281 -27.06070 -26.39409 -24.43561 -23.21128 -22.66721 -21.57970 -20.36570 -20.12393 -17.77631 -16.98384 -15.92801 -15.37662 -15.17430 -14.64391 -14.56296 -14.46993 -14.17912 -13.95388 -13.66371 -13.64908 -13.21647 -12.77668 -12.53882 -12.29567 -12.11735 -12.07941 -11.86468 -11.50791 -11.20896 -11.15389 -11.06191 -10.89172 -10.88310 -10.73197 -10.61026 -10.29333 -10.10216 -9.95314 -9.89461 -9.63254 -8.97049 -8.52759 -8.21852 -8.06191 -7.41086 -5.96830 -4.14974 3.30484 3.35959 3.37531 4.10701 4.32976 4.49505 4.84003 4.94888 5.06443 5.20803 5.24904 5.29928 5.35981 5.42518 5.47118 5.51662 5.63064 5.69072 5.70400 5.77092 5.82037 5.84633 5.86782 5.97394 6.01334 6.09664 6.17830 6.20800 6.26657 6.29575 6.34976 6.40673 6.47407 6.52784 6.58955 6.74794 6.75784 7.01972 7.16747 7.22051 7.64783 7.80484 7.83949 8.03764 8.26405 8.88632 9.42020 9.62149 11.07097 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020399 B = 0.005348 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.261452 B = 5234.328581 C = 6144.781700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.542 5.542 3 C 0.058 3.942 4 C 0.045 3.955 5 N -0.522 5.522 6 C 0.029 3.971 7 C 0.239 3.761 8 H 0.062 0.938 9 O -0.560 6.560 10 C -0.572 4.572 11 H 0.053 0.947 12 C 0.081 3.919 13 N -0.858 5.858 14 Si 0.887 3.113 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.115 3.885 19 C -0.136 4.136 20 C -0.111 4.111 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.111 4.111 24 C 0.069 3.931 25 H 0.022 0.978 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.031 0.969 31 H 0.113 0.887 32 H 0.072 0.928 33 H 0.022 0.978 34 H 0.340 0.660 35 H 0.260 0.740 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.036 0.964 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.684 -12.035 -4.411 17.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.070 4.070 4 C -0.083 4.083 5 N -0.245 5.245 6 C -0.098 4.098 7 C 0.181 3.819 8 H 0.079 0.921 9 O -0.362 6.362 10 C -0.611 4.611 11 H 0.071 0.929 12 C -0.125 4.125 13 N -0.494 5.494 14 Si 0.715 3.285 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C 0.025 3.975 19 C -0.175 4.175 20 C -0.150 4.150 21 C -0.158 4.158 22 C -0.155 4.155 23 C -0.149 4.149 24 C -0.059 4.059 25 H 0.041 0.959 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.131 0.869 32 H 0.090 0.910 33 H 0.040 0.960 34 H 0.183 0.817 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.054 0.946 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.010 -11.573 -3.801 17.106 hybrid contribution 1.394 -0.308 -0.317 1.463 sum -10.615 -11.881 -4.118 16.456 Atomic orbital electron populations 1.22319 0.88150 1.01550 1.00238 1.62194 1.06889 1.14598 1.42983 1.22216 0.95992 0.88422 1.00411 1.22559 0.92756 1.01467 0.91517 1.62440 1.09164 1.10547 1.42315 1.23143 0.84909 1.02687 0.99059 1.19365 0.92564 0.80794 0.89172 0.92070 1.86548 1.75035 1.52381 1.22267 1.21604 0.92976 0.98735 1.47739 0.92913 1.25007 0.98002 0.95390 0.94117 1.70068 1.35336 1.02058 1.41927 0.86770 0.86029 0.77225 0.78519 1.20242 1.21238 1.20198 1.21023 0.93189 0.89193 0.94088 1.22064 1.00173 0.95737 0.99491 1.21474 1.00534 0.95682 0.97266 1.21560 1.00872 0.98244 0.95079 1.21568 1.00584 0.95993 0.97401 1.21664 1.01087 0.94215 0.97936 1.22235 0.94457 0.97709 0.91456 0.95931 0.91690 0.91908 0.91079 0.94246 0.95092 0.86895 0.90968 0.95961 0.81695 0.93008 0.90858 0.92554 0.92851 0.91880 0.92172 0.92627 0.92169 0.92182 0.90948 0.91321 0.94589 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.60 60.06 0.58 0.86 16 2 N -0.54 -7.38 4.28 -242.75 -1.04 -8.42 16 3 C 0.06 0.86 5.62 -3.77 -0.02 0.84 16 4 C 0.04 0.77 4.94 -3.76 -0.02 0.75 16 5 N -0.52 -9.44 4.40 -218.82 -0.96 -10.41 16 6 C 0.03 0.60 3.65 -3.83 -0.01 0.58 16 7 C 0.24 5.98 3.04 -27.88 -0.08 5.90 16 8 H 0.06 1.75 8.14 -51.93 -0.42 1.33 16 9 O -0.56 -13.94 9.90 -35.23 -0.35 -14.29 16 10 C -0.57 -15.59 8.76 -34.44 -0.30 -15.89 16 11 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 12 C 0.08 2.26 5.40 -17.82 -0.10 2.17 16 13 N -0.86 -25.37 12.84 55.43 0.71 -24.66 16 14 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 C 0.12 1.74 0.43 -131.54 -0.06 1.68 16 19 C -0.14 -1.95 3.95 -26.73 -0.11 -2.05 16 20 C -0.11 -1.33 5.65 -26.73 -0.15 -1.48 16 21 C -0.12 -1.34 5.92 -26.73 -0.16 -1.49 16 22 C -0.12 -1.36 5.65 -26.72 -0.15 -1.51 16 23 C -0.11 -1.60 4.49 -26.74 -0.12 -1.72 16 24 C 0.07 0.96 3.63 -3.76 -0.01 0.95 16 25 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.03 0.53 6.33 -51.93 -0.33 0.20 16 31 H 0.11 2.18 5.38 -51.93 -0.28 1.90 16 32 H 0.07 1.47 5.36 -51.93 -0.28 1.19 16 33 H 0.02 0.45 7.38 -51.93 -0.38 0.07 16 34 H 0.34 7.62 9.04 45.56 0.41 8.03 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.07 1.13 5.93 -51.93 -0.31 0.83 16 37 H 0.06 0.88 6.98 -51.93 -0.36 0.52 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.74 6.39 -51.93 -0.33 0.41 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.65 6.46 -51.93 -0.34 0.32 16 44 H 0.07 1.14 5.97 -51.93 -0.31 0.83 16 45 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.08 0.95 4.81 -51.93 -0.25 0.70 16 LS Contribution 336.78 15.07 5.08 5.08 Total: -1.00 -29.08 336.78 -9.67 -38.75 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -7.37 Total: 8.22 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -0.72 Total: -10.41 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: -1.29 Total: -43.49 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.35 Total: -14.29 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.08 -9.67 -38.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809576841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.172 kcal (2) G-P(sol) polarization free energy of solvation -29.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds