Wall clock time and date at job start Tue Mar 31 2020 05:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46845 * 110.99976 * 2 1 4 4 C 1.53050 * 109.62165 * 186.21154 * 3 2 1 5 5 C 1.53215 * 109.20055 * 300.37838 * 4 3 2 6 6 C 1.52586 * 109.19086 * 56.83894 * 5 4 3 7 7 C 1.53810 * 110.18360 * 181.48619 * 6 5 4 8 8 C 1.54498 * 104.89671 * 241.09785 * 7 6 5 9 9 N 1.48602 * 104.61186 * 23.76756 * 8 7 6 10 10 C 1.46895 * 110.99881 * 201.19702 * 9 8 7 11 11 C 1.53001 * 109.47538 * 290.12495 * 10 9 8 12 12 O 1.42901 * 109.46669 * 64.99999 * 11 10 9 13 13 C 1.42900 * 113.99871 * 180.02562 * 12 11 10 14 14 C 1.50709 * 109.47108 * 180.02562 * 13 12 11 15 15 H 1.07995 * 119.99516 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99760 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00436 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99790 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46876 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47147 * 119.99701 * 18 16 14 21 21 H 1.48505 * 109.46979 * 239.99986 * 18 16 14 22 22 C 1.48658 * 104.29304 * 320.79735 * 9 8 7 23 23 C 1.46951 * 110.99960 * 124.14400 * 2 1 3 24 24 H 1.09002 * 109.47401 * 295.85535 * 1 2 3 25 25 H 1.09001 * 109.46874 * 175.85548 * 1 2 3 26 26 H 1.09004 * 109.46970 * 55.85681 * 1 2 3 27 27 H 1.09001 * 109.44974 * 306.25815 * 3 2 1 28 28 H 1.09004 * 109.44936 * 66.16366 * 3 2 1 29 29 H 1.09004 * 109.51191 * 180.46148 * 4 3 2 30 30 H 1.08995 * 109.51676 * 60.29646 * 4 3 2 31 31 H 1.09005 * 109.51963 * 296.92270 * 5 4 3 32 32 H 1.09004 * 109.56459 * 176.78700 * 5 4 3 33 33 H 1.09000 * 110.35117 * 359.95167 * 7 6 5 34 34 H 1.08994 * 110.35054 * 122.24192 * 7 6 5 35 35 H 1.08993 * 110.40767 * 142.55247 * 8 7 6 36 36 H 1.09004 * 110.40781 * 264.98919 * 8 7 6 37 37 H 1.09006 * 109.47154 * 50.13199 * 10 9 8 38 38 H 1.09007 * 109.47234 * 170.12435 * 10 9 8 39 39 H 1.08997 * 109.47237 * 184.99458 * 11 10 9 40 40 H 1.09000 * 109.47041 * 305.00710 * 11 10 9 41 41 H 1.08995 * 109.47024 * 299.99819 * 13 12 11 42 42 H 1.08994 * 109.47075 * 60.00081 * 13 12 11 43 43 H 0.96994 * 120.00343 * 179.97438 * 17 16 14 44 44 H 1.09002 * 110.42957 * 280.32650 * 22 9 8 45 45 H 1.08997 * 110.43509 * 157.83060 * 22 9 8 46 46 H 1.09005 * 109.45210 * 295.13513 * 23 2 1 47 47 H 1.08999 * 109.45136 * 55.08572 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5174 1.3371 -0.1560 5 6 4.1257 0.5466 1.0070 6 6 3.5151 -0.8514 1.0369 7 6 4.0832 -1.6535 2.2199 8 6 4.7915 -2.8654 1.5745 9 7 5.1133 -2.4200 0.1939 10 6 5.3233 -3.5705 -0.6950 11 6 6.6271 -4.2761 -0.3167 12 8 6.5061 -4.8291 0.9954 13 6 7.6761 -5.5135 1.4478 14 6 7.4375 -6.0536 2.8344 15 1 6.4876 -5.8901 3.3215 16 6 8.4324 -6.7554 3.4815 17 7 9.5893 -6.9540 2.8885 18 14 8.1369 -7.4242 5.2004 19 1 6.7644 -7.0674 5.6412 20 1 8.2851 -8.9018 5.1889 21 1 9.1264 -6.8347 6.1378 22 6 3.9234 -1.6335 -0.2248 23 6 1.9956 -0.7700 1.1354 24 1 -0.3634 0.4482 0.9248 25 1 -0.3633 -1.0250 -0.0743 26 1 -0.3633 0.5768 -0.8506 27 1 1.5578 1.9276 -0.8288 28 1 1.7375 1.8586 0.9402 29 1 3.9069 2.3552 -0.1475 30 1 3.7762 0.8552 -1.0987 31 1 3.9120 1.0575 1.9459 32 1 5.2046 0.4701 0.8716 33 1 4.7984 -1.0497 2.7787 34 1 3.2772 -1.9887 2.8725 35 1 5.7046 -3.1061 2.1188 36 1 4.1242 -3.7269 1.5501 37 1 4.4904 -4.2661 -0.5917 38 1 5.3829 -3.2259 -1.7274 39 1 6.8283 -5.0749 -1.0305 40 1 7.4471 -3.5580 -0.3341 41 1 7.8995 -6.3378 0.7707 42 1 8.5175 -4.8209 1.4671 43 1 10.2893 -7.4474 3.3439 44 1 3.1183 -2.2986 -0.5371 45 1 4.1849 -0.9470 -1.0300 46 1 1.7181 -0.2779 2.0677 47 1 1.5765 -1.7761 1.1173 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815146276.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:12 Heat of formation + Delta-G solvation = -46.554698 kcal Electronic energy + Delta-G solvation = -23353.503247 eV Core-core repulsion = 20149.650369 eV Total energy + Delta-G solvation = -3203.852878 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.29237 -37.67855 -36.29364 -33.72439 -32.70227 -32.05139 -29.36688 -28.51922 -26.97659 -26.72726 -24.79006 -23.11836 -22.62626 -22.10852 -21.16171 -20.13038 -18.47315 -16.38007 -16.22221 -15.79357 -15.56373 -15.32975 -15.12612 -14.63444 -14.36654 -13.90450 -13.78792 -13.60860 -13.48127 -13.07383 -12.95511 -12.51197 -12.25618 -12.12502 -11.93199 -11.70640 -11.49024 -11.37788 -11.13992 -11.05834 -10.84041 -10.72862 -10.62431 -10.47412 -10.33326 -10.20072 -10.12605 -9.88096 -9.04323 -8.76513 -8.51674 -8.12429 -8.03558 -6.08494 -4.09893 3.29987 3.36490 3.42481 3.70899 4.32417 4.37107 4.61878 4.67163 4.72402 4.91739 5.01876 5.02698 5.16560 5.20965 5.28103 5.30713 5.35711 5.40119 5.49701 5.59205 5.61545 5.64091 5.64438 5.73009 5.78909 5.82029 5.87523 6.02920 6.08873 6.12847 6.15064 6.24628 6.31420 6.39478 6.42583 6.50853 6.80441 6.86732 6.88618 7.17180 7.29041 7.43613 7.49608 7.81983 8.19313 8.63201 9.04331 9.55000 11.03142 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027544 B = 0.003436 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.303498 B = 8147.376486 C = 8539.498709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.541 5.541 3 C 0.056 3.944 4 C -0.119 4.119 5 C -0.103 4.103 6 C -0.057 4.057 7 C -0.120 4.120 8 C 0.047 3.953 9 N -0.509 5.509 10 C 0.051 3.949 11 C 0.066 3.934 12 O -0.393 6.393 13 C 0.195 3.805 14 C -0.511 4.511 15 H 0.066 0.934 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.905 3.095 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.054 3.946 23 C 0.069 3.931 24 H 0.022 0.978 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.030 0.970 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.042 0.958 37 H 0.038 0.962 38 H 0.076 0.924 39 H 0.038 0.962 40 H 0.045 0.955 41 H 0.002 0.998 42 H 0.005 0.995 43 H 0.263 0.737 44 H 0.041 0.959 45 H 0.078 0.922 46 H 0.033 0.967 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.598 16.093 -6.580 23.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.266 5.266 3 C -0.072 4.072 4 C -0.157 4.157 5 C -0.141 4.141 6 C -0.058 4.058 7 C -0.158 4.158 8 C -0.081 4.081 9 N -0.233 5.233 10 C -0.077 4.077 11 C -0.012 4.012 12 O -0.313 6.313 13 C 0.121 3.879 14 C -0.550 4.550 15 H 0.084 0.916 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.733 3.267 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.074 4.074 23 C -0.059 4.059 24 H 0.041 0.959 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.121 0.879 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.020 0.980 42 H 0.023 0.977 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.097 0.903 46 H 0.051 0.949 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.941 16.098 -6.901 23.022 hybrid contribution -0.806 -0.633 1.418 1.750 sum -15.747 15.465 -5.483 22.743 Atomic orbital electron populations 1.22345 0.87514 1.02211 1.00207 1.61935 1.07234 1.13761 1.43634 1.22093 0.96063 0.88999 1.00013 1.21672 0.93963 1.00069 0.99969 1.21544 1.00850 0.93996 0.97720 1.20934 0.93171 0.95741 0.95936 1.22452 0.99561 0.97224 0.96589 1.23145 1.00989 0.94484 0.89441 1.65444 1.35590 1.19641 1.02645 1.22257 0.97538 0.91588 0.96332 1.22233 0.96216 0.95573 0.87140 1.87861 1.41014 1.73236 1.29154 1.20159 0.82664 0.90442 0.94640 1.21087 1.00387 1.33904 0.99575 0.91607 1.24946 0.94841 0.96134 0.98628 1.69971 1.04452 1.41347 1.38007 0.86320 0.78387 0.78498 0.83509 1.19517 1.20913 1.20868 1.23027 0.91580 0.96206 0.96605 1.22152 0.94689 0.98067 0.90960 0.95913 0.91398 0.91497 0.91101 0.95222 0.91666 0.90763 0.92583 0.90602 0.90972 0.91789 0.87943 0.93944 0.94355 0.90537 0.94397 0.93690 0.98006 0.97748 0.92763 0.94087 0.90339 0.94888 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.60 60.07 0.58 0.78 16 2 N -0.54 -5.39 4.65 -243.21 -1.13 -6.52 16 3 C 0.06 0.50 5.45 -3.83 -0.02 0.48 16 4 C -0.12 -1.10 5.88 -26.59 -0.16 -1.26 16 5 C -0.10 -1.12 4.54 -26.83 -0.12 -1.24 16 6 C -0.06 -0.67 0.68 -154.07 -0.11 -0.78 16 7 C -0.12 -1.61 6.29 -25.52 -0.16 -1.77 16 8 C 0.05 0.79 5.11 -2.09 -0.01 0.78 16 9 N -0.51 -8.06 5.37 -230.05 -1.24 -9.30 16 10 C 0.05 0.82 5.37 -3.83 -0.02 0.80 16 11 C 0.07 1.27 6.24 37.16 0.23 1.51 16 12 O -0.39 -9.35 7.57 -35.23 -0.27 -9.61 16 13 C 0.20 5.38 5.69 36.01 0.20 5.58 16 14 C -0.51 -15.00 9.43 -34.44 -0.32 -15.33 16 15 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 18 Si 0.91 21.89 29.54 -169.99 -5.02 16.87 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.05 0.71 5.14 -2.36 -0.01 0.69 16 23 C 0.07 0.75 3.84 -4.06 -0.02 0.73 16 24 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 27 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 28 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.74 6.46 -51.93 -0.34 0.41 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.97 7.70 -51.93 -0.40 0.57 16 34 H 0.06 0.80 7.70 -51.93 -0.40 0.40 16 35 H 0.10 2.08 6.82 -51.93 -0.35 1.73 16 36 H 0.04 0.76 7.82 -51.93 -0.41 0.35 16 37 H 0.04 0.63 7.88 -51.93 -0.41 0.22 16 38 H 0.08 1.04 8.13 -51.92 -0.42 0.62 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 42 H 0.00 0.14 8.14 -51.93 -0.42 -0.29 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.04 0.56 7.66 -51.93 -0.40 0.16 16 45 H 0.08 1.01 6.11 -51.93 -0.32 0.69 16 46 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 LS Contribution 356.65 15.07 5.37 5.37 Total: -1.00 -30.46 356.65 -10.47 -40.93 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -8.90 Total: -3.89 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -0.03 Total: -7.51 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: -1.63 Total: -42.16 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -0.27 Total: -9.61 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.46 -10.47 -40.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815146276.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.626 kcal (2) G-P(sol) polarization free energy of solvation -30.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds