Wall clock time and date at job start Tue Mar 31 2020 05:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46845 * 110.99976 * 2 1 4 4 C 1.53050 * 109.62165 * 186.21154 * 3 2 1 5 5 C 1.53215 * 109.20055 * 300.37838 * 4 3 2 6 6 C 1.52586 * 109.19086 * 56.83894 * 5 4 3 7 7 C 1.53810 * 110.18360 * 181.48619 * 6 5 4 8 8 C 1.54498 * 104.89671 * 241.09785 * 7 6 5 9 9 N 1.48602 * 104.61186 * 23.76756 * 8 7 6 10 10 C 1.46895 * 110.99881 * 201.19702 * 9 8 7 11 11 C 1.53001 * 109.47538 * 290.12495 * 10 9 8 12 12 O 1.42901 * 109.46669 * 64.99999 * 11 10 9 13 13 C 1.42900 * 113.99871 * 180.02562 * 12 11 10 14 14 C 1.50709 * 109.47108 * 180.02562 * 13 12 11 15 15 H 1.07995 * 119.99516 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99760 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00436 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99790 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46876 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47147 * 119.99701 * 18 16 14 21 21 H 1.48505 * 109.46979 * 239.99986 * 18 16 14 22 22 C 1.48658 * 104.29304 * 320.79735 * 9 8 7 23 23 C 1.46951 * 110.99960 * 124.14400 * 2 1 3 24 24 H 1.09002 * 109.47401 * 295.85535 * 1 2 3 25 25 H 1.09001 * 109.46874 * 175.85548 * 1 2 3 26 26 H 1.09004 * 109.46970 * 55.85681 * 1 2 3 27 27 H 1.09001 * 109.44974 * 306.25815 * 3 2 1 28 28 H 1.09004 * 109.44936 * 66.16366 * 3 2 1 29 29 H 1.09004 * 109.51191 * 180.46148 * 4 3 2 30 30 H 1.08995 * 109.51676 * 60.29646 * 4 3 2 31 31 H 1.09005 * 109.51963 * 296.92270 * 5 4 3 32 32 H 1.09004 * 109.56459 * 176.78700 * 5 4 3 33 33 H 1.09000 * 110.35117 * 359.95167 * 7 6 5 34 34 H 1.08994 * 110.35054 * 122.24192 * 7 6 5 35 35 H 1.08993 * 110.40767 * 142.55247 * 8 7 6 36 36 H 1.09004 * 110.40781 * 264.98919 * 8 7 6 37 37 H 1.09006 * 109.47154 * 50.13199 * 10 9 8 38 38 H 1.09007 * 109.47234 * 170.12435 * 10 9 8 39 39 H 1.08997 * 109.47237 * 184.99458 * 11 10 9 40 40 H 1.09000 * 109.47041 * 305.00710 * 11 10 9 41 41 H 1.08995 * 109.47024 * 299.99819 * 13 12 11 42 42 H 1.08994 * 109.47075 * 60.00081 * 13 12 11 43 43 H 0.96994 * 120.00343 * 179.97438 * 17 16 14 44 44 H 1.09002 * 110.42957 * 280.32650 * 22 9 8 45 45 H 1.08997 * 110.43509 * 157.83060 * 22 9 8 46 46 H 1.09005 * 109.45210 * 295.13513 * 23 2 1 47 47 H 1.08999 * 109.45136 * 55.08572 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5174 1.3371 -0.1560 5 6 4.1257 0.5466 1.0070 6 6 3.5151 -0.8514 1.0369 7 6 4.0832 -1.6535 2.2199 8 6 4.7915 -2.8654 1.5745 9 7 5.1133 -2.4200 0.1939 10 6 5.3233 -3.5705 -0.6950 11 6 6.6271 -4.2761 -0.3167 12 8 6.5061 -4.8291 0.9954 13 6 7.6761 -5.5135 1.4478 14 6 7.4375 -6.0536 2.8344 15 1 6.4876 -5.8901 3.3215 16 6 8.4324 -6.7554 3.4815 17 7 9.5893 -6.9540 2.8885 18 14 8.1369 -7.4242 5.2004 19 1 6.7644 -7.0674 5.6412 20 1 8.2851 -8.9018 5.1889 21 1 9.1264 -6.8347 6.1378 22 6 3.9234 -1.6335 -0.2248 23 6 1.9956 -0.7700 1.1354 24 1 -0.3634 0.4482 0.9248 25 1 -0.3633 -1.0250 -0.0743 26 1 -0.3633 0.5768 -0.8506 27 1 1.5578 1.9276 -0.8288 28 1 1.7375 1.8586 0.9402 29 1 3.9069 2.3552 -0.1475 30 1 3.7762 0.8552 -1.0987 31 1 3.9120 1.0575 1.9459 32 1 5.2046 0.4701 0.8716 33 1 4.7984 -1.0497 2.7787 34 1 3.2772 -1.9887 2.8725 35 1 5.7046 -3.1061 2.1188 36 1 4.1242 -3.7269 1.5501 37 1 4.4904 -4.2661 -0.5917 38 1 5.3829 -3.2259 -1.7274 39 1 6.8283 -5.0749 -1.0305 40 1 7.4471 -3.5580 -0.3341 41 1 7.8995 -6.3378 0.7707 42 1 8.5175 -4.8209 1.4671 43 1 10.2893 -7.4474 3.3439 44 1 3.1183 -2.2986 -0.5371 45 1 4.1849 -0.9470 -1.0300 46 1 1.7181 -0.2779 2.0677 47 1 1.5765 -1.7761 1.1173 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815146276.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:11 Heat of formation + Delta-G solvation = -67.277170 kcal Electronic energy + Delta-G solvation = -23354.401841 eV Core-core repulsion = 20149.650369 eV Total energy + Delta-G solvation = -3204.751472 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.28336 -39.02293 -37.81167 -35.10682 -34.49630 -33.09686 -30.61678 -29.99933 -28.69472 -27.66658 -25.86536 -24.57973 -23.89433 -23.62153 -22.25174 -21.36106 -19.39878 -18.60306 -17.47472 -17.42045 -16.70837 -16.60214 -16.20566 -16.04332 -15.68286 -15.20514 -15.04408 -14.85460 -14.63646 -14.51591 -13.94822 -13.77383 -13.50133 -13.21053 -12.99973 -12.98894 -12.89470 -12.76485 -12.64761 -12.48281 -12.32387 -12.18476 -12.01617 -11.84348 -11.63850 -11.32929 -11.24466 -11.12204 -11.04843 -10.85093 -10.17357 -9.36382 -9.23222 -8.31820 -6.43851 1.39169 1.40711 1.55212 2.34397 2.97169 3.02038 3.10560 3.24634 3.66848 3.73430 3.78981 4.05956 4.17542 4.30251 4.33293 4.34584 4.38407 4.48595 4.54092 4.56096 4.57524 4.63563 4.71575 4.73563 4.79172 4.82827 4.83222 4.90113 4.95091 4.99679 5.02606 5.04165 5.13299 5.19300 5.22272 5.23269 5.36528 5.47050 5.51534 5.55563 5.97047 5.98933 6.12850 6.16514 6.20049 6.54921 6.83597 7.28138 8.80935 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027544 B = 0.003436 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.303498 B = 8147.376486 C = 8539.498709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.553 5.553 3 C 0.057 3.943 4 C -0.114 4.114 5 C -0.101 4.101 6 C -0.051 4.051 7 C -0.114 4.114 8 C 0.051 3.949 9 N -0.519 5.519 10 C 0.059 3.941 11 C 0.058 3.942 12 O -0.399 6.399 13 C 0.211 3.789 14 C -0.542 4.542 15 H 0.062 0.938 16 C 0.005 3.995 17 N -0.932 5.932 18 Si 0.982 3.018 19 H -0.263 1.263 20 H -0.272 1.272 21 H -0.272 1.272 22 C 0.061 3.939 23 C 0.075 3.925 24 H 0.026 0.974 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.032 0.968 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.027 0.973 37 H 0.035 0.965 38 H 0.108 0.892 39 H 0.047 0.953 40 H 0.040 0.960 41 H -0.018 1.018 42 H -0.019 1.019 43 H 0.270 0.730 44 H 0.039 0.961 45 H 0.087 0.913 46 H 0.037 0.963 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.232 17.239 -6.367 25.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.277 5.277 3 C -0.071 4.071 4 C -0.152 4.152 5 C -0.139 4.139 6 C -0.052 4.052 7 C -0.153 4.153 8 C -0.077 4.077 9 N -0.244 5.244 10 C -0.069 4.069 11 C -0.019 4.019 12 O -0.318 6.318 13 C 0.136 3.864 14 C -0.580 4.580 15 H 0.080 0.920 16 C -0.193 4.193 17 N -0.571 5.571 18 Si 0.805 3.195 19 H -0.187 1.187 20 H -0.197 1.197 21 H -0.197 1.197 22 C -0.066 4.066 23 C -0.053 4.053 24 H 0.045 0.955 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.051 0.949 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.045 0.955 37 H 0.053 0.947 38 H 0.126 0.874 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.000 1.000 42 H -0.001 1.001 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.106 0.894 46 H 0.055 0.945 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.590 17.263 -6.712 24.865 hybrid contribution -0.279 -0.953 1.259 1.603 sum -16.868 16.309 -5.454 24.089 Atomic orbital electron populations 1.22379 0.86341 1.02525 1.00967 1.61938 1.08383 1.14335 1.43052 1.22128 0.95619 0.88574 1.00755 1.21643 0.94347 1.00549 0.98670 1.21508 0.99909 0.93553 0.98928 1.20889 0.94243 0.95905 0.94169 1.22402 0.99585 0.95969 0.97293 1.22934 0.98959 0.95585 0.90253 1.65406 1.37288 1.19564 1.02126 1.22233 0.95318 0.91500 0.97858 1.22532 0.98287 0.95883 0.85203 1.87860 1.39222 1.73036 1.31723 1.19761 0.83172 0.89363 0.94114 1.21385 1.00740 1.35198 1.00633 0.92019 1.25965 0.94221 0.95830 1.03316 1.70081 1.05369 1.41616 1.40062 0.85149 0.78723 0.78076 0.77535 1.18748 1.19707 1.19703 1.23023 0.90271 0.95866 0.97470 1.22026 0.93484 0.98148 0.91688 0.95494 0.91459 0.90263 0.89687 0.94942 0.90100 0.91407 0.91928 0.92112 0.91123 0.90732 0.92065 0.95494 0.94652 0.87351 0.93468 0.94155 1.00012 1.00123 0.92105 0.94267 0.89433 0.94458 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.60 127.69 1.23 1.58 16 2 N -0.55 -9.68 4.65 -923.38 -4.29 -13.97 16 3 C 0.06 0.85 5.45 86.33 0.47 1.32 16 4 C -0.11 -1.84 5.88 30.68 0.18 -1.66 16 5 C -0.10 -2.03 4.54 30.53 0.14 -1.89 16 6 C -0.05 -1.15 0.68 -51.90 -0.04 -1.18 16 7 C -0.11 -3.06 6.29 31.38 0.20 -2.86 16 8 C 0.05 1.77 5.11 86.48 0.44 2.21 16 9 N -0.52 -16.44 5.37 -881.75 -4.74 -21.17 16 10 C 0.06 1.88 5.37 86.30 0.46 2.34 16 11 C 0.06 2.29 6.24 71.98 0.45 2.74 16 12 O -0.40 -19.80 7.57 -148.98 -1.13 -20.93 16 13 C 0.21 12.16 5.69 71.24 0.41 12.57 16 14 C -0.54 -32.72 9.43 25.60 0.24 -32.48 16 15 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 16 C 0.00 0.29 5.46 84.65 0.46 0.75 16 17 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 18 Si 0.98 44.94 29.54 68.60 2.03 46.97 16 19 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 C 0.06 1.53 5.14 86.28 0.44 1.97 16 23 C 0.07 1.48 3.84 86.12 0.33 1.81 16 24 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.08 0.90 8.09 -2.38 -0.02 0.88 16 27 H 0.08 1.06 8.08 -2.39 -0.02 1.04 16 28 H 0.03 0.48 8.14 -2.38 -0.02 0.46 16 29 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.07 1.19 6.46 -2.39 -0.02 1.18 16 31 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.07 1.91 7.70 -2.39 -0.02 1.89 16 34 H 0.07 1.82 7.70 -2.39 -0.02 1.81 16 35 H 0.06 2.64 6.82 -2.39 -0.02 2.62 16 36 H 0.03 1.00 7.82 -2.39 -0.02 0.98 16 37 H 0.04 1.15 7.88 -2.38 -0.02 1.13 16 38 H 0.11 2.76 8.13 -2.38 -0.02 2.74 16 39 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 41 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 42 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 43 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 44 H 0.04 1.02 7.66 -2.39 -0.02 1.00 16 45 H 0.09 2.08 6.11 -2.39 -0.01 2.06 16 46 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 47 H 0.07 1.42 8.08 -2.39 -0.02 1.40 16 Total: -1.00 -66.49 356.65 -1.53 -68.02 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.90 Total: 10.54 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: 5.41 Total: -12.78 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -8.74 Total: -91.83 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -1.13 Total: -20.93 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -66.49 -1.53 -68.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815146276.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.745 kcal (2) G-P(sol) polarization free energy of solvation -66.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds