Wall clock time and date at job start Tue Mar 31 2020 05:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50701 * 119.99878 * 2 1 4 4 C 1.52993 * 109.47608 * 295.27735 * 3 2 1 5 5 C 1.52997 * 109.47610 * 179.97438 * 4 3 2 6 6 C 1.50693 * 109.47641 * 179.97438 * 5 4 3 7 7 H 1.08002 * 119.99655 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00264 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00140 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00161 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47179 * 59.99957 * 10 8 6 12 12 H 1.48498 * 109.47202 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.46840 * 300.00462 * 10 8 6 14 14 N 1.28014 * 120.00192 * 180.28353 * 2 1 3 15 15 N 1.40104 * 119.99535 * 359.71728 * 14 2 1 16 16 C 1.46506 * 119.99589 * 180.02562 * 15 14 2 17 17 H 1.08996 * 109.54232 * 30.00281 * 16 15 14 18 18 C 1.53174 * 109.54290 * 269.82592 * 16 15 14 19 19 C 1.53093 * 109.16169 * 183.15538 * 18 16 15 20 20 O 1.42897 * 109.41789 * 57.60512 * 19 18 16 21 21 C 1.42902 * 114.09867 * 298.84706 * 20 19 18 22 22 C 1.53005 * 109.48017 * 181.13905 * 21 20 19 23 23 C 1.52994 * 109.48045 * 301.16002 * 21 20 19 24 24 C 1.53104 * 109.48870 * 61.10984 * 21 20 19 25 25 H 1.09000 * 109.46964 * 269.72135 * 1 2 3 26 26 H 1.09003 * 109.47060 * 29.71948 * 1 2 3 27 27 H 1.09001 * 109.46926 * 149.72247 * 1 2 3 28 28 H 1.09001 * 109.46925 * 55.28115 * 3 2 1 29 29 H 1.09007 * 109.47193 * 175.27530 * 3 2 1 30 30 H 1.09001 * 109.47288 * 300.00158 * 4 3 2 31 31 H 1.09007 * 109.47011 * 59.99684 * 4 3 2 32 32 H 1.09001 * 109.47126 * 300.00504 * 5 4 3 33 33 H 1.09007 * 109.46990 * 59.99918 * 5 4 3 34 34 H 0.97000 * 120.00457 * 179.97438 * 9 8 6 35 35 H 0.96999 * 120.00331 * 0.02562 * 15 14 2 36 36 H 1.08998 * 109.52280 * 303.05773 * 18 16 15 37 37 H 1.08999 * 109.52682 * 63.18565 * 18 16 15 38 38 H 1.08998 * 109.48440 * 177.59311 * 19 18 16 39 39 H 1.09006 * 109.47855 * 297.62176 * 19 18 16 40 40 H 1.08995 * 109.47455 * 59.99367 * 22 21 20 41 41 H 1.08998 * 109.47202 * 180.02562 * 22 21 20 42 42 H 1.09009 * 109.46742 * 299.99649 * 22 21 20 43 43 H 1.09002 * 109.47428 * 59.99693 * 23 21 20 44 44 H 1.08996 * 109.47237 * 180.02562 * 23 21 20 45 45 H 1.09004 * 109.47256 * 299.99922 * 23 21 20 46 46 H 1.09002 * 109.59521 * 182.57779 * 24 21 20 47 47 H 1.08996 * 109.45432 * 62.38178 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 1.9821 2.0548 -1.3043 5 6 2.7466 3.3801 -1.3040 6 6 2.4729 4.1183 -2.5890 7 1 1.8188 3.6856 -3.3314 8 6 3.0568 5.3464 -2.8163 9 7 3.8530 5.8736 -1.9120 10 14 2.7170 6.2618 -4.4089 11 1 1.2609 6.5298 -4.5248 12 1 3.4591 7.5480 -4.4086 13 1 3.1611 5.4348 -5.5595 14 7 2.1471 -1.1086 -0.0055 15 7 1.4466 -2.3219 -0.0055 16 6 2.1791 -3.5906 -0.0112 17 1 3.1338 -3.4628 0.4990 18 6 2.4259 -4.0333 -1.4567 19 6 3.1215 -5.3971 -1.4528 20 8 2.3146 -6.3399 -0.7443 21 6 2.0896 -6.0022 0.6259 22 6 1.2423 -7.0910 1.2873 23 6 3.4323 -5.8898 1.3507 24 6 1.3535 -4.6622 0.7074 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3633 0.8925 -0.5095 27 1 -0.3633 -0.8875 -0.5181 28 1 1.9352 1.9124 0.8447 29 1 3.3292 1.1077 0.0847 30 1 2.3074 1.4475 -2.1490 31 1 0.9134 2.2522 -1.3889 32 1 2.4210 3.9872 -0.4593 33 1 3.8153 3.1831 -1.2192 34 1 4.2640 6.7374 -2.0721 35 1 0.4766 -2.3219 -0.0017 36 1 1.4737 -4.1116 -1.9813 37 1 3.0592 -3.3018 -1.9586 38 1 3.2613 -5.7369 -2.4790 39 1 4.0917 -5.3089 -0.9636 40 1 1.7666 -8.0447 1.2296 41 1 1.0704 -6.8330 2.3323 42 1 0.2855 -7.1706 0.7710 43 1 4.0357 -5.1139 0.8797 44 1 3.2605 -5.6326 2.3959 45 1 3.9572 -6.8434 1.2931 46 1 1.2214 -4.3806 1.7521 47 1 0.3790 -4.7536 0.2278 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841638574.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:04 Heat of formation + Delta-G solvation = -35.298247 kcal Electronic energy + Delta-G solvation = -22205.508908 eV Core-core repulsion = 19002.144146 eV Total energy + Delta-G solvation = -3203.364762 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.33541 -37.74747 -35.23100 -33.95248 -33.68561 -32.04375 -30.12458 -28.59279 -27.70085 -27.54721 -26.68561 -24.01714 -23.33931 -21.68244 -20.28558 -19.68825 -18.79615 -16.73390 -16.48630 -16.18357 -15.89010 -15.33912 -14.99121 -14.62883 -14.44322 -14.16940 -13.90629 -13.66613 -13.38659 -13.05432 -12.78439 -12.48611 -12.30246 -12.26822 -11.96833 -11.93097 -11.78840 -11.59624 -11.44782 -11.33101 -11.25162 -10.88109 -10.75716 -10.52395 -10.48364 -10.31601 -9.82261 -9.71486 -9.56006 -9.25819 -9.04581 -8.30257 -7.66512 -5.95703 -3.97732 2.59105 3.02215 3.35787 3.40026 3.42682 3.46367 4.34984 4.45749 4.49386 4.57928 4.69274 4.85320 4.95906 5.04394 5.08393 5.12273 5.22064 5.30153 5.32044 5.39856 5.41196 5.43024 5.50094 5.55665 5.59971 5.63530 5.73299 5.78762 5.88931 5.92055 6.00855 6.08492 6.10992 6.21116 6.41953 6.73037 6.91474 6.96243 6.99506 7.18555 7.32496 7.72909 7.88794 8.05221 8.47907 8.74516 9.09319 9.65872 11.15580 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032345 B = 0.002504 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.466496 B =11178.023279 C =11459.869155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.071 3.929 3 C -0.057 4.057 4 C -0.102 4.102 5 C 0.021 3.979 6 C -0.519 4.519 7 H 0.053 0.947 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 N -0.247 5.247 15 N -0.671 5.671 16 C 0.188 3.812 17 H 0.081 0.919 18 C -0.172 4.172 19 C 0.061 3.939 20 O -0.375 6.375 21 C 0.117 3.883 22 C -0.137 4.137 23 C -0.183 4.183 24 C -0.150 4.150 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.017 0.983 33 H 0.017 0.983 34 H 0.260 0.740 35 H 0.371 0.629 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.077 0.923 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.124 -24.906 7.455 26.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.124 4.124 3 C -0.097 4.097 4 C -0.141 4.141 5 C -0.016 4.016 6 C -0.558 4.558 7 H 0.072 0.928 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.053 5.053 15 N -0.409 5.409 16 C 0.082 3.918 17 H 0.099 0.901 18 C -0.211 4.211 19 C -0.017 4.017 20 O -0.294 6.294 21 C 0.077 3.923 22 C -0.194 4.194 23 C -0.240 4.240 24 C -0.189 4.189 25 H 0.089 0.911 26 H 0.101 0.899 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.070 0.930 35 H 0.210 0.790 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.096 0.904 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.062 -25.478 7.421 26.846 hybrid contribution -1.298 1.098 -0.892 1.920 sum -5.360 -24.381 6.529 25.803 Atomic orbital electron populations 1.21198 0.94059 1.03196 1.02318 1.24826 0.93803 0.93912 0.99827 1.20503 0.99416 0.89399 1.00389 1.21601 1.00413 0.98124 0.93926 1.19103 0.95356 0.90201 0.96950 1.21229 1.28163 1.03239 1.03155 0.92834 1.25020 0.95258 0.97573 0.96639 1.69952 1.31275 1.17998 1.34317 0.86679 0.78318 0.79037 0.84080 1.20287 1.21320 1.20297 1.73811 1.26698 0.92121 1.12643 1.47982 1.05437 1.00298 1.87166 1.20500 0.95746 0.81237 0.94295 0.90051 1.22780 1.02188 0.97430 0.98716 1.22594 0.93498 0.88507 0.97053 1.87961 1.71633 1.47721 1.22092 1.21405 0.94617 0.93709 0.82577 1.21756 0.99793 0.97924 0.99971 1.22495 0.97445 1.02860 1.01193 1.22513 0.99990 0.94638 1.01756 0.91146 0.89864 0.92592 0.90627 0.90818 0.93385 0.93244 0.96498 0.96496 0.92997 0.78969 0.91296 0.90277 0.88756 0.92650 0.91651 0.91075 0.91806 0.91569 0.91338 0.91655 0.90416 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.45 36.01 0.34 -1.53 16 2 C 0.07 1.10 6.55 -78.91 -0.52 0.58 16 3 C -0.06 -0.99 5.60 -27.89 -0.16 -1.15 16 4 C -0.10 -2.09 5.03 -26.74 -0.13 -2.23 16 5 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 6 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 7 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 10 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 14 N -0.25 -3.89 11.39 35.60 0.41 -3.48 16 15 N -0.67 -8.62 5.95 -4.73 -0.03 -8.65 16 16 C 0.19 2.06 2.90 -67.75 -0.20 1.86 16 17 H 0.08 0.96 6.62 -51.93 -0.34 0.61 16 18 C -0.17 -1.83 5.75 -26.59 -0.15 -1.98 16 19 C 0.06 0.56 6.52 37.21 0.24 0.80 16 20 O -0.37 -3.80 10.24 -35.23 -0.36 -4.16 16 21 C 0.12 0.98 1.11 -90.57 -0.10 0.88 16 22 C -0.14 -0.93 8.85 37.16 0.33 -0.60 16 23 C -0.18 -1.38 7.93 37.15 0.29 -1.08 16 24 C -0.15 -1.32 4.43 -26.59 -0.12 -1.44 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.08 1.07 6.90 -51.93 -0.36 0.72 16 27 H 0.06 0.65 6.32 -51.93 -0.33 0.32 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.07 1.33 8.11 -51.93 -0.42 0.91 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.97 7.00 -51.93 -0.36 0.61 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.37 4.33 6.35 -182.60 -1.16 3.17 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.47 6.34 -51.93 -0.33 0.14 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 43 H 0.07 0.54 4.98 -51.93 -0.26 0.28 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 366.18 15.07 5.52 5.52 Total: -1.00 -31.15 366.18 -8.91 -40.06 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -9.45 Total: -0.62 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -0.72 Total: -19.10 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 1.11 Total: -38.51 kcal Atomic # 8 Polarization: -3.80 SS G_CDS: -0.36 Total: -4.16 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.15 -8.91 -40.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841638574.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.761 kcal (2) G-P(sol) polarization free energy of solvation -31.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds