Wall clock time and date at job start Tue Mar 31 2020 05:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.50702 * 120.00040 * 2 1 4 4 C 1.53005 * 109.47041 * 294.99813 * 3 2 1 5 5 C 1.53001 * 109.46971 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.46736 * 180.02562 * 5 4 3 7 7 H 1.07996 * 120.00220 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99855 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00052 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00030 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47024 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47121 * 120.00112 * 10 8 6 13 13 H 1.48504 * 109.46873 * 239.99908 * 10 8 6 14 14 N 1.28014 * 120.00442 * 179.97438 * 2 1 3 15 15 N 1.40095 * 119.99495 * 0.02562 * 14 2 1 16 16 C 1.46506 * 120.00011 * 179.97438 * 15 14 2 17 17 H 1.08996 * 109.53887 * 330.00572 * 16 15 14 18 18 C 1.53185 * 109.54245 * 90.17637 * 16 15 14 19 19 C 1.53089 * 109.16139 * 176.84734 * 18 16 15 20 20 O 1.42902 * 109.41844 * 302.39588 * 19 18 16 21 21 C 1.42905 * 114.09897 * 61.15619 * 20 19 18 22 22 C 1.52994 * 109.48044 * 58.82570 * 21 20 19 23 23 C 1.52992 * 109.47808 * 178.85100 * 21 20 19 24 24 C 1.53100 * 109.48516 * 298.88856 * 21 20 19 25 25 H 1.08999 * 109.47579 * 269.99872 * 1 2 3 26 26 H 1.09001 * 109.47104 * 30.00525 * 1 2 3 27 27 H 1.08998 * 109.46994 * 150.00046 * 1 2 3 28 28 H 1.08996 * 109.47346 * 54.99547 * 3 2 1 29 29 H 1.09001 * 109.47480 * 174.99781 * 3 2 1 30 30 H 1.09000 * 109.47053 * 299.99585 * 4 3 2 31 31 H 1.09001 * 109.47010 * 59.99680 * 4 3 2 32 32 H 1.09000 * 109.46891 * 299.99682 * 5 4 3 33 33 H 1.09001 * 109.47517 * 59.99988 * 5 4 3 34 34 H 0.96997 * 120.00105 * 180.02562 * 9 8 6 35 35 H 0.96998 * 120.00152 * 359.97438 * 15 14 2 36 36 H 1.08999 * 109.52112 * 296.75779 * 18 16 15 37 37 H 1.09000 * 109.51821 * 56.94300 * 18 16 15 38 38 H 1.09006 * 109.47779 * 62.38011 * 19 18 16 39 39 H 1.09000 * 109.47699 * 182.40825 * 19 18 16 40 40 H 1.09008 * 109.47348 * 59.99745 * 22 21 20 41 41 H 1.08993 * 109.47258 * 179.97438 * 22 21 20 42 42 H 1.09003 * 109.47506 * 300.00131 * 22 21 20 43 43 H 1.09004 * 109.47808 * 59.99930 * 23 21 20 44 44 H 1.09007 * 109.47237 * 180.02562 * 23 21 20 45 45 H 1.09000 * 109.47102 * 299.99854 * 23 21 20 46 46 H 1.09000 * 109.45990 * 297.61715 * 24 21 20 47 47 H 1.09007 * 109.59880 * 177.41906 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 1.9875 2.0516 -1.3074 5 6 2.7530 3.3763 -1.3077 6 6 2.4837 4.1118 -2.5952 7 1 1.8321 3.6776 -3.3389 8 6 3.0700 5.3386 -2.8239 9 7 3.8639 5.8671 -1.9184 10 14 2.7367 6.2499 -4.4201 11 1 1.8172 5.4471 -5.2658 12 1 2.1132 7.5636 -4.1192 13 1 4.0154 6.4633 -5.1445 14 7 2.1471 -1.1086 0.0005 15 7 1.4466 -2.3218 0.0005 16 6 2.1791 -3.5906 0.0005 17 1 3.1318 -3.4615 -0.5130 18 6 2.4315 -4.0366 1.4441 19 6 3.1270 -5.4003 1.4344 20 8 2.3173 -6.3416 0.7269 21 6 2.0872 -6.0007 -0.6417 22 6 3.4271 -5.8864 -1.3713 23 6 1.2376 -7.0881 -1.3024 24 6 1.3508 -4.6606 -0.7174 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.9316 1.9145 0.8417 29 1 3.3287 1.1079 0.0896 30 1 2.3164 1.4422 -2.1492 31 1 0.9192 2.2487 -1.3970 32 1 2.4246 3.9859 -0.4659 33 1 3.8213 3.1787 -1.2183 34 1 4.2761 6.7303 -2.0792 35 1 0.4766 -2.3218 0.0005 36 1 3.0675 -3.3067 1.9449 37 1 1.4812 -4.1161 1.9721 38 1 4.0953 -5.3110 0.9418 39 1 3.2706 -5.7424 2.4593 40 1 3.9525 -6.8400 -1.3178 41 1 3.2514 -5.6269 -2.4152 42 1 4.0322 -5.1114 -0.9008 43 1 0.2828 -7.1692 -0.7827 44 1 1.0625 -6.8282 -2.3464 45 1 1.7625 -8.0419 -1.2489 46 1 0.3780 -4.7530 -0.2343 47 1 1.2148 -4.3765 -1.7610 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841638596.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:06 Heat of formation + Delta-G solvation = -35.392532 kcal Electronic energy + Delta-G solvation = -22198.587500 eV Core-core repulsion = 18995.218650 eV Total energy + Delta-G solvation = -3203.368850 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.33857 -37.74916 -35.23410 -33.95127 -33.69082 -32.04794 -30.13383 -28.59594 -27.68959 -27.54383 -26.68448 -24.03394 -23.34086 -21.68333 -20.29544 -19.68309 -18.80195 -16.73698 -16.49067 -16.18661 -15.89044 -15.35580 -15.00894 -14.52494 -14.52063 -14.21620 -13.89712 -13.61145 -13.37792 -13.11966 -12.76023 -12.45998 -12.31893 -12.26432 -11.97102 -11.93746 -11.74372 -11.61157 -11.45261 -11.34572 -11.28837 -10.87618 -10.74897 -10.50939 -10.50079 -10.31515 -9.82743 -9.72018 -9.56406 -9.26308 -9.02349 -8.31234 -7.66754 -5.96379 -3.98223 2.58985 3.02159 3.32998 3.40425 3.44629 3.45705 4.35472 4.46501 4.49080 4.57554 4.69273 4.84610 4.94658 5.04160 5.07724 5.12055 5.23899 5.30474 5.32839 5.39444 5.40765 5.44140 5.50613 5.55508 5.59937 5.64040 5.72920 5.79325 5.88323 5.90448 6.00415 6.07407 6.11291 6.20633 6.41779 6.72913 6.91338 6.96102 6.98567 7.18360 7.32376 7.73134 7.88528 8.04836 8.47549 8.74494 9.09345 9.65544 11.15014 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028348 B = 0.002526 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.477668 B =11080.674905 C =11350.993341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.071 3.929 3 C -0.057 4.057 4 C -0.102 4.102 5 C 0.020 3.980 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.055 3.945 9 N -0.896 5.896 10 Si 0.890 3.110 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.247 5.247 15 N -0.671 5.671 16 C 0.188 3.812 17 H 0.082 0.918 18 C -0.170 4.170 19 C 0.060 3.940 20 O -0.375 6.375 21 C 0.117 3.883 22 C -0.183 4.183 23 C -0.137 4.137 24 C -0.151 4.151 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.017 0.983 33 H 0.017 0.983 34 H 0.259 0.741 35 H 0.371 0.629 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.094 0.906 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.186 -24.918 5.351 26.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.124 4.124 3 C -0.097 4.097 4 C -0.140 4.140 5 C -0.017 4.017 6 C -0.556 4.556 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.718 3.282 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.211 1.211 14 N -0.053 5.053 15 N -0.409 5.409 16 C 0.082 3.918 17 H 0.100 0.900 18 C -0.209 4.209 19 C -0.017 4.017 20 O -0.294 6.294 21 C 0.077 3.923 22 C -0.240 4.240 23 C -0.195 4.195 24 C -0.190 4.190 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.069 0.931 35 H 0.210 0.790 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.112 0.888 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.091 0.909 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.130 -25.499 5.461 26.402 hybrid contribution -1.274 1.112 -0.913 1.922 sum -5.404 -24.386 4.547 25.388 Atomic orbital electron populations 1.21193 0.94059 1.03166 1.02342 1.24822 0.93802 0.93915 0.99821 1.20505 0.99418 0.89405 1.00385 1.21601 1.00417 0.98143 0.93888 1.19117 0.95356 0.90231 0.96990 1.21306 1.28092 1.03279 1.02950 0.92721 1.25027 0.95264 0.97596 0.96657 1.69974 1.31437 1.17923 1.34208 0.86566 0.78019 0.79731 0.83868 1.19787 1.21050 1.21056 1.73810 1.26700 0.92118 1.12645 1.47974 1.05435 1.00295 1.87172 1.20505 0.95826 0.81255 0.94255 0.90014 1.22766 1.02037 0.97373 0.98744 1.22591 0.93525 0.88547 0.97022 1.87959 1.71441 1.47684 1.22338 1.21405 0.94644 0.93707 0.82509 1.22499 0.97415 1.02829 1.01290 1.21757 0.99735 0.97919 1.00047 1.22523 0.99925 0.94634 1.01903 0.91156 0.89854 0.92596 0.90638 0.90818 0.93380 0.93234 0.96492 0.96478 0.93112 0.78967 0.90438 0.91341 0.92638 0.88826 0.91655 0.91244 0.91577 0.91814 0.91013 0.91656 0.90895 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.46 36.00 0.34 -1.53 16 2 C 0.07 1.10 6.55 -78.91 -0.52 0.58 16 3 C -0.06 -0.99 5.60 -27.88 -0.16 -1.15 16 4 C -0.10 -2.08 5.03 -26.73 -0.13 -2.22 16 5 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 6 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 7 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 10 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 14 N -0.25 -3.89 11.38 35.60 0.41 -3.48 16 15 N -0.67 -8.62 5.95 -4.73 -0.03 -8.65 16 16 C 0.19 2.05 2.90 -67.74 -0.20 1.85 16 17 H 0.08 0.98 6.62 -51.93 -0.34 0.64 16 18 C -0.17 -1.70 5.75 -26.59 -0.15 -1.86 16 19 C 0.06 0.53 6.51 37.20 0.24 0.77 16 20 O -0.37 -3.74 10.24 -35.23 -0.36 -4.10 16 21 C 0.12 1.00 1.11 -90.57 -0.10 0.90 16 22 C -0.18 -1.44 7.93 37.15 0.29 -1.15 16 23 C -0.14 -0.96 8.85 37.15 0.33 -0.63 16 24 C -0.15 -1.36 4.43 -26.59 -0.12 -1.48 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.08 1.07 6.91 -51.93 -0.36 0.71 16 27 H 0.06 0.64 6.31 -51.93 -0.33 0.31 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.07 1.33 8.11 -51.93 -0.42 0.90 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.97 7.01 -51.93 -0.36 0.61 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.37 4.33 6.34 -182.60 -1.16 3.17 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.46 6.34 -51.93 -0.33 0.13 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.56 4.98 -51.93 -0.26 0.30 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 366.19 15.07 5.52 5.52 Total: -1.00 -31.15 366.19 -8.91 -40.06 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -9.45 Total: -0.66 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -0.72 Total: -19.09 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 1.11 Total: -38.49 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: -0.36 Total: -4.10 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.15 -8.91 -40.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841638596.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.672 kcal (2) G-P(sol) polarization free energy of solvation -31.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds