Wall clock time and date at job start Tue Mar 31 2020 05:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.50702 * 120.00040 * 2 1 4 4 C 1.53005 * 109.47041 * 294.99813 * 3 2 1 5 5 C 1.53001 * 109.46971 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.46736 * 180.02562 * 5 4 3 7 7 H 1.07996 * 120.00220 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99855 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00052 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00030 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47024 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47121 * 120.00112 * 10 8 6 13 13 H 1.48504 * 109.46873 * 239.99908 * 10 8 6 14 14 N 1.28014 * 120.00442 * 179.97438 * 2 1 3 15 15 N 1.40095 * 119.99495 * 0.02562 * 14 2 1 16 16 C 1.46506 * 120.00011 * 179.97438 * 15 14 2 17 17 H 1.08996 * 109.53887 * 330.00572 * 16 15 14 18 18 C 1.53185 * 109.54245 * 90.17637 * 16 15 14 19 19 C 1.53089 * 109.16139 * 176.84734 * 18 16 15 20 20 O 1.42902 * 109.41844 * 302.39588 * 19 18 16 21 21 C 1.42905 * 114.09897 * 61.15619 * 20 19 18 22 22 C 1.52994 * 109.48044 * 58.82570 * 21 20 19 23 23 C 1.52992 * 109.47808 * 178.85100 * 21 20 19 24 24 C 1.53100 * 109.48516 * 298.88856 * 21 20 19 25 25 H 1.08999 * 109.47579 * 269.99872 * 1 2 3 26 26 H 1.09001 * 109.47104 * 30.00525 * 1 2 3 27 27 H 1.08998 * 109.46994 * 150.00046 * 1 2 3 28 28 H 1.08996 * 109.47346 * 54.99547 * 3 2 1 29 29 H 1.09001 * 109.47480 * 174.99781 * 3 2 1 30 30 H 1.09000 * 109.47053 * 299.99585 * 4 3 2 31 31 H 1.09001 * 109.47010 * 59.99680 * 4 3 2 32 32 H 1.09000 * 109.46891 * 299.99682 * 5 4 3 33 33 H 1.09001 * 109.47517 * 59.99988 * 5 4 3 34 34 H 0.96997 * 120.00105 * 180.02562 * 9 8 6 35 35 H 0.96998 * 120.00152 * 359.97438 * 15 14 2 36 36 H 1.08999 * 109.52112 * 296.75779 * 18 16 15 37 37 H 1.09000 * 109.51821 * 56.94300 * 18 16 15 38 38 H 1.09006 * 109.47779 * 62.38011 * 19 18 16 39 39 H 1.09000 * 109.47699 * 182.40825 * 19 18 16 40 40 H 1.09008 * 109.47348 * 59.99745 * 22 21 20 41 41 H 1.08993 * 109.47258 * 179.97438 * 22 21 20 42 42 H 1.09003 * 109.47506 * 300.00131 * 22 21 20 43 43 H 1.09004 * 109.47808 * 59.99930 * 23 21 20 44 44 H 1.09007 * 109.47237 * 180.02562 * 23 21 20 45 45 H 1.09000 * 109.47102 * 299.99854 * 23 21 20 46 46 H 1.09000 * 109.45990 * 297.61715 * 24 21 20 47 47 H 1.09007 * 109.59880 * 177.41906 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 1.9875 2.0516 -1.3074 5 6 2.7530 3.3763 -1.3077 6 6 2.4837 4.1118 -2.5952 7 1 1.8321 3.6776 -3.3389 8 6 3.0700 5.3386 -2.8239 9 7 3.8639 5.8671 -1.9184 10 14 2.7367 6.2499 -4.4201 11 1 1.8172 5.4471 -5.2658 12 1 2.1132 7.5636 -4.1192 13 1 4.0154 6.4633 -5.1445 14 7 2.1471 -1.1086 0.0005 15 7 1.4466 -2.3218 0.0005 16 6 2.1791 -3.5906 0.0005 17 1 3.1318 -3.4615 -0.5130 18 6 2.4315 -4.0366 1.4441 19 6 3.1270 -5.4003 1.4344 20 8 2.3173 -6.3416 0.7269 21 6 2.0872 -6.0007 -0.6417 22 6 3.4271 -5.8864 -1.3713 23 6 1.2376 -7.0881 -1.3024 24 6 1.3508 -4.6606 -0.7174 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.9316 1.9145 0.8417 29 1 3.3287 1.1079 0.0896 30 1 2.3164 1.4422 -2.1492 31 1 0.9192 2.2487 -1.3970 32 1 2.4246 3.9859 -0.4659 33 1 3.8213 3.1787 -1.2183 34 1 4.2761 6.7303 -2.0792 35 1 0.4766 -2.3218 0.0005 36 1 3.0675 -3.3067 1.9449 37 1 1.4812 -4.1161 1.9721 38 1 4.0953 -5.3110 0.9418 39 1 3.2706 -5.7424 2.4593 40 1 3.9525 -6.8400 -1.3178 41 1 3.2514 -5.6269 -2.4152 42 1 4.0322 -5.1114 -0.9008 43 1 0.2828 -7.1692 -0.7827 44 1 1.0625 -6.8282 -2.3464 45 1 1.7625 -8.0419 -1.2489 46 1 0.3780 -4.7530 -0.2343 47 1 1.2148 -4.3765 -1.7610 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841638596.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:05 Heat of formation + Delta-G solvation = -53.403602 kcal Electronic energy + Delta-G solvation = -22199.368519 eV Core-core repulsion = 18995.218650 eV Total energy + Delta-G solvation = -3204.149869 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.07782 -38.91432 -36.53892 -35.34400 -34.56434 -33.77677 -31.39261 -29.54356 -28.88206 -28.28157 -27.94534 -25.44578 -24.56324 -22.59674 -22.01866 -20.59050 -19.85922 -18.45349 -17.51430 -17.23036 -16.96417 -16.49927 -16.23944 -15.81161 -15.54403 -15.30856 -15.12738 -14.71919 -14.50682 -14.07922 -13.97600 -13.61535 -13.39742 -13.18503 -13.02426 -12.93646 -12.81634 -12.75269 -12.65833 -12.59134 -12.39724 -12.34874 -12.15794 -12.07723 -11.62441 -11.42056 -11.35357 -11.16800 -11.04474 -10.72218 -10.52443 -10.51969 -8.74576 -8.17064 -6.27740 1.39110 1.41341 1.41851 1.54870 2.01226 2.43239 2.79032 3.15904 3.61269 3.79065 3.82358 3.87135 4.02373 4.02692 4.15533 4.25360 4.35125 4.35184 4.41810 4.47519 4.61367 4.66370 4.68988 4.74500 4.77760 4.82762 4.84052 4.88049 4.98558 5.02486 5.04591 5.07063 5.12025 5.20971 5.27180 5.30558 5.36830 5.37516 5.57673 5.68674 5.84194 5.91019 6.29097 6.29605 6.34808 6.89838 7.41159 7.64834 8.94804 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028348 B = 0.002526 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.477668 B =11080.674905 C =11350.993341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.062 3.938 3 C -0.049 4.049 4 C -0.085 4.085 5 C 0.023 3.977 6 C -0.540 4.540 7 H 0.059 0.941 8 C -0.002 4.002 9 N -0.934 5.934 10 Si 0.964 3.036 11 H -0.262 1.262 12 H -0.277 1.277 13 H -0.280 1.280 14 N -0.267 5.267 15 N -0.665 5.665 16 C 0.184 3.816 17 H 0.069 0.931 18 C -0.162 4.162 19 C 0.062 3.938 20 O -0.387 6.387 21 C 0.114 3.886 22 C -0.182 4.182 23 C -0.136 4.136 24 C -0.143 4.143 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.039 0.961 31 H 0.061 0.939 32 H -0.002 1.002 33 H -0.011 1.011 34 H 0.263 0.737 35 H 0.379 0.621 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.107 0.893 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.084 0.916 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.516 -26.139 4.515 27.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.133 4.133 3 C -0.089 4.089 4 C -0.124 4.124 5 C -0.015 4.015 6 C -0.578 4.578 7 H 0.077 0.923 8 C -0.200 4.200 9 N -0.574 5.574 10 Si 0.788 3.212 11 H -0.186 1.186 12 H -0.202 1.202 13 H -0.205 1.205 14 N -0.074 5.074 15 N -0.404 5.404 16 C 0.078 3.922 17 H 0.087 0.913 18 C -0.202 4.202 19 C -0.015 4.015 20 O -0.306 6.306 21 C 0.074 3.926 22 C -0.239 4.239 23 C -0.193 4.193 24 C -0.182 4.182 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.017 0.983 33 H 0.007 0.993 34 H 0.072 0.928 35 H 0.219 0.781 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.125 0.875 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.103 0.897 45 H 0.087 0.913 46 H 0.095 0.905 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.471 -26.739 4.627 27.682 hybrid contribution -0.810 1.441 -0.616 1.764 sum -6.281 -25.298 4.011 26.373 Atomic orbital electron populations 1.21177 0.91806 1.03653 1.03513 1.24601 0.95088 0.92859 1.00747 1.20275 0.99051 0.90658 0.98869 1.21341 1.00112 0.95508 0.95429 1.19034 0.94314 0.92590 0.95521 1.21746 1.28224 1.03930 1.03946 0.92297 1.25979 0.94900 0.98635 1.00454 1.70102 1.32408 1.18505 1.36419 0.85421 0.78130 0.78387 0.79245 1.18615 1.20244 1.20549 1.73702 1.28167 0.93194 1.12333 1.48041 1.05909 0.99769 1.86674 1.20651 0.95578 0.80992 0.94976 0.91307 1.22671 1.01803 0.97834 0.97891 1.22634 0.93372 0.87684 0.97852 1.87952 1.71613 1.47986 1.23070 1.21544 0.95082 0.93821 0.82142 1.22491 0.97091 1.02849 1.01499 1.21773 0.99395 0.97498 1.00626 1.22467 0.99742 0.94198 1.01759 0.89583 0.90066 0.91338 0.89782 0.92202 0.94166 0.91998 0.98341 0.99265 0.92821 0.78112 0.91649 0.91509 0.92231 0.87484 0.91094 0.90609 0.92440 0.91818 0.89721 0.91331 0.90507 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.46 71.23 0.67 -2.64 16 2 C 0.06 1.85 6.55 46.53 0.30 2.16 16 3 C -0.05 -1.70 5.60 29.85 0.17 -1.53 16 4 C -0.09 -3.51 5.03 30.60 0.15 -3.35 16 5 C 0.02 1.20 4.97 29.85 0.15 1.35 16 6 C -0.54 -31.08 9.11 25.60 0.23 -30.84 16 7 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 8 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 9 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 10 Si 0.96 44.60 29.54 68.60 2.03 46.62 16 11 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 14 N -0.27 -8.26 11.38 -41.20 -0.47 -8.72 16 15 N -0.66 -16.29 5.95 -168.87 -1.00 -17.30 16 16 C 0.18 3.84 2.90 45.11 0.13 3.97 16 17 H 0.07 1.63 6.62 -2.39 -0.02 1.62 16 18 C -0.16 -3.13 5.75 30.69 0.18 -2.95 16 19 C 0.06 1.01 6.51 72.01 0.47 1.48 16 20 O -0.39 -7.12 10.24 -148.98 -1.53 -8.64 16 21 C 0.11 1.75 1.11 -10.76 -0.01 1.74 16 22 C -0.18 -2.63 7.93 71.98 0.57 -2.06 16 23 C -0.14 -1.63 8.85 71.98 0.64 -0.99 16 24 C -0.14 -2.35 4.43 30.69 0.14 -2.22 16 25 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.08 1.93 6.91 -2.39 -0.02 1.92 16 27 H 0.07 1.41 6.31 -2.39 -0.02 1.40 16 28 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.06 2.21 8.11 -2.39 -0.02 2.19 16 30 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 2.38 7.01 -2.39 -0.02 2.37 16 32 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 33 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 34 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 35 H 0.38 8.14 6.34 -213.33 -1.35 6.79 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.06 0.93 6.34 -2.38 -0.02 0.92 16 39 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.06 0.93 4.98 -2.39 -0.01 0.91 16 43 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 45 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 46 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -66.54 366.19 3.14 -63.40 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -0.43 Total: 17.28 kcal Atomic # 6 Polarization: -39.81 SS G_CDS: 4.25 Total: -35.56 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -1.19 Total: -83.10 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -1.53 Total: -8.64 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -66.54 3.14 -63.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841638596.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.000 kcal (2) G-P(sol) polarization free energy of solvation -66.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds