Wall clock time and date at job start Tue Mar 31 2020 05:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47063 * 2 1 4 4 C 1.52997 * 109.47201 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47404 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47404 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47146 * 185.49456 * 6 5 4 8 8 H 1.08998 * 109.47492 * 57.48617 * 7 6 5 9 9 C 1.53006 * 109.47276 * 297.48408 * 7 6 5 10 10 N 1.46904 * 109.47386 * 177.48290 * 7 6 5 11 11 C 1.46959 * 110.99815 * 304.95351 * 10 7 6 12 12 C 1.53053 * 109.36226 * 176.80843 * 11 10 7 13 13 N 1.46952 * 109.36392 * 58.39668 * 12 11 10 14 14 C 1.46904 * 111.00152 * 176.80937 * 13 12 11 15 15 C 1.50701 * 109.46793 * 59.38859 * 14 13 12 16 16 H 1.07996 * 120.00304 * 4.37693 * 15 14 13 17 17 C 1.37877 * 120.00040 * 184.38023 * 15 14 13 18 18 N 1.31523 * 119.99590 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00117 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46961 * 90.00039 * 19 17 15 21 21 H 1.48499 * 109.47302 * 209.99682 * 19 17 15 22 22 H 1.48498 * 109.47211 * 329.99870 * 19 17 15 23 23 C 1.46959 * 110.88549 * 300.67955 * 13 12 11 24 24 C 1.46952 * 111.00152 * 181.14764 * 10 7 6 25 25 H 1.09000 * 109.47095 * 300.00346 * 1 2 3 26 26 H 1.09001 * 109.46921 * 60.00457 * 1 2 3 27 27 H 1.09000 * 109.46696 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47403 * 240.00099 * 2 1 3 29 29 H 1.09001 * 109.46921 * 119.99543 * 2 1 3 30 30 H 1.08999 * 109.46930 * 59.99809 * 3 2 1 31 31 H 1.09001 * 109.46879 * 299.99569 * 3 2 1 32 32 H 1.09009 * 109.47133 * 60.00268 * 4 3 2 33 33 H 1.08997 * 109.47428 * 300.00153 * 4 3 2 34 34 H 1.08999 * 109.46564 * 60.00234 * 5 4 3 35 35 H 1.08997 * 109.47218 * 300.00606 * 5 4 3 36 36 H 1.08997 * 109.47254 * 65.49301 * 6 5 4 37 37 H 1.08998 * 109.46813 * 305.49469 * 6 5 4 38 38 H 1.09008 * 109.46550 * 300.00197 * 9 7 6 39 39 H 1.09000 * 109.47058 * 59.99644 * 9 7 6 40 40 H 1.08999 * 109.47214 * 180.02562 * 9 7 6 41 41 H 1.09003 * 109.48559 * 296.77362 * 11 10 7 42 42 H 1.08996 * 109.49293 * 56.83871 * 11 10 7 43 43 H 1.08996 * 109.48968 * 298.43058 * 12 11 10 44 44 H 1.09000 * 109.48500 * 178.36471 * 12 11 10 45 45 H 1.08998 * 109.47262 * 179.38894 * 14 13 12 46 46 H 1.09007 * 109.46956 * 299.39114 * 14 13 12 47 47 H 0.96999 * 119.99698 * 179.97438 * 18 17 15 48 48 H 1.09003 * 109.48559 * 299.35428 * 23 13 12 49 49 H 1.08996 * 109.49293 * 179.28919 * 23 13 12 50 50 H 1.09000 * 109.49184 * 303.15445 * 24 10 7 51 51 H 1.09000 * 109.48875 * 63.20063 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6100 2.8851 0.0013 7 6 6.1198 4.3210 0.1388 8 1 5.7194 4.7630 1.0511 9 6 5.6632 5.1422 -1.0688 10 7 7.5876 4.3158 0.2006 11 6 8.0661 3.4401 1.2794 12 6 9.5959 3.4000 1.2595 13 7 10.1212 4.7631 1.4194 14 6 11.5889 4.7578 1.4812 15 6 12.1429 4.1588 0.2142 16 1 11.4759 3.8814 -0.5886 17 6 13.5013 3.9648 0.0798 18 7 14.3137 4.3030 1.0573 19 14 14.1879 3.2217 -1.4904 20 1 14.4984 4.3059 -2.4565 21 1 15.4277 2.4658 -1.1794 22 1 13.1835 2.3027 -2.0835 23 6 9.6427 5.6388 0.3406 24 6 8.1128 5.6789 0.3604 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9286 -0.8892 33 1 3.9330 0.9289 0.8908 34 1 3.7163 3.3993 0.8896 35 1 3.7170 3.3984 -0.8904 36 1 5.9741 2.4581 -0.9331 37 1 5.9726 2.2890 0.8387 38 1 6.0637 4.7001 -1.9812 39 1 4.5742 5.1461 -1.1147 40 1 6.0268 6.1651 -0.9711 41 1 7.7248 3.8266 2.2398 42 1 7.6739 2.4338 1.1320 43 1 9.9366 2.9881 0.3096 44 1 9.9539 2.7741 2.0770 45 1 11.9517 5.7800 1.5887 46 1 11.9145 4.1649 2.3360 47 1 15.2693 4.1662 0.9630 48 1 9.9839 5.2523 -0.6198 49 1 10.0348 6.6450 0.4880 50 1 7.7549 6.3048 -0.4570 51 1 7.7718 6.0910 1.3102 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866591180.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:12 Heat of formation + Delta-G solvation = -26.409256 kcal Electronic energy + Delta-G solvation = -22822.162466 eV Core-core repulsion = 19755.016254 eV Total energy + Delta-G solvation = -3067.146212 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.13755 -37.05743 -35.79926 -33.61321 -32.34423 -30.84885 -30.42996 -28.06186 -27.16350 -25.19346 -24.35717 -22.55202 -21.94168 -21.35622 -21.20069 -19.83722 -19.04645 -16.43742 -16.18076 -15.92904 -15.06925 -14.70063 -14.63352 -14.18856 -14.10633 -13.98160 -13.87205 -13.52442 -13.11195 -12.91883 -12.72294 -12.50457 -12.20932 -11.99016 -11.86927 -11.67822 -11.51769 -11.18568 -11.16597 -11.03126 -10.96643 -10.83881 -10.79005 -10.68917 -10.50387 -10.46620 -10.32918 -10.18340 -9.82471 -9.77025 -9.45375 -8.39751 -7.96053 -7.11508 -5.99036 -4.07757 3.30036 3.36674 3.40685 4.09788 4.44036 4.48924 4.62460 4.78784 4.86176 4.91600 5.06080 5.11907 5.19123 5.28034 5.31166 5.36880 5.42737 5.46373 5.49486 5.59031 5.64279 5.69063 5.70849 5.75016 5.78994 5.88257 5.90106 5.92353 5.95210 5.96397 6.03918 6.06889 6.13014 6.14702 6.23984 6.28044 6.38512 6.44940 6.68953 6.83431 6.94027 7.27387 7.45698 7.50014 7.56298 7.94042 8.10947 8.34016 8.34504 9.03163 9.58839 11.05891 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.024360 B = 0.002809 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.128277 B = 9967.203078 C =10415.023525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.120 4.120 5 C -0.117 4.117 6 C -0.115 4.115 7 C 0.081 3.919 8 H 0.034 0.966 9 C -0.145 4.145 10 N -0.533 5.533 11 C 0.056 3.944 12 C 0.065 3.935 13 N -0.544 5.544 14 C 0.186 3.814 15 C -0.546 4.546 16 H 0.059 0.941 17 C 0.063 3.937 18 N -0.892 5.892 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.064 3.936 24 C 0.058 3.942 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.031 0.969 42 H 0.072 0.928 43 H 0.049 0.951 44 H 0.066 0.934 45 H 0.027 0.973 46 H 0.033 0.967 47 H 0.261 0.739 48 H 0.046 0.954 49 H 0.066 0.934 50 H 0.071 0.929 51 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.075 -3.778 -2.027 24.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.158 4.158 5 C -0.155 4.155 6 C -0.153 4.153 7 C -0.027 4.027 8 H 0.052 0.948 9 C -0.203 4.203 10 N -0.258 5.258 11 C -0.072 4.072 12 C -0.064 4.064 13 N -0.269 5.269 14 C 0.061 3.939 15 C -0.585 4.585 16 H 0.077 0.923 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.717 3.283 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.065 4.065 24 C -0.070 4.070 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.090 0.910 43 H 0.067 0.933 44 H 0.085 0.915 45 H 0.045 0.955 46 H 0.051 0.949 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.084 0.916 50 H 0.089 0.911 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -23.874 -3.767 -1.958 24.248 hybrid contribution 0.623 -0.392 -0.850 1.124 sum -23.251 -4.159 -2.808 23.786 Atomic orbital electron populations 1.21784 0.96085 1.01467 1.01719 1.21551 0.95678 0.97169 1.02015 1.21628 0.95706 0.96527 1.01891 1.21612 0.94987 0.97062 1.02122 1.21622 0.95517 0.96531 1.01872 1.21713 0.94576 0.96177 1.02843 1.21595 0.88095 0.95789 0.97228 0.94823 1.21911 1.00190 0.99771 0.98413 1.62173 1.07225 1.10383 1.46052 1.22292 0.96689 0.96503 0.91696 1.21913 0.91393 0.91902 1.01142 1.62684 1.12986 1.08296 1.42899 1.19735 0.80440 0.97298 0.96446 1.21773 0.92380 1.41869 1.02462 0.92306 1.24977 0.97166 0.95459 0.96330 1.69954 1.03538 1.47835 1.31805 0.86637 0.78527 0.79343 0.83778 1.20686 1.21218 1.19917 1.21926 0.91803 0.97587 0.95181 1.22253 0.96339 0.89147 0.99276 0.92832 0.92830 0.92911 0.92085 0.92086 0.92173 0.92149 0.92000 0.92076 0.92342 0.91850 0.91179 0.91664 0.91900 0.92501 0.92688 0.95099 0.90966 0.93301 0.91536 0.95512 0.94870 0.92892 0.93530 0.91574 0.91102 0.95064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.13 -0.87 5.93 -26.73 -0.16 -1.03 16 3 C -0.12 -0.88 5.21 -26.73 -0.14 -1.02 16 4 C -0.12 -0.99 5.21 -26.73 -0.14 -1.13 16 5 C -0.12 -1.05 4.77 -26.73 -0.13 -1.18 16 6 C -0.12 -1.28 4.41 -26.73 -0.12 -1.39 16 7 C 0.08 1.03 2.17 -67.71 -0.15 0.88 16 8 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 9 C -0.15 -1.62 8.71 37.16 0.32 -1.30 16 10 N -0.53 -8.43 4.58 -226.48 -1.04 -9.47 16 11 C 0.06 0.93 5.20 -3.76 -0.02 0.91 16 12 C 0.07 1.33 5.24 -3.77 -0.02 1.31 16 13 N -0.54 -12.06 4.92 -235.90 -1.16 -13.22 16 14 C 0.19 4.90 5.14 -4.97 -0.03 4.87 16 15 C -0.55 -15.22 7.66 -34.44 -0.26 -15.48 16 16 H 0.06 1.65 5.82 -52.49 -0.31 1.34 16 17 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 18 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 19 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.06 1.29 5.31 -3.76 -0.02 1.27 16 24 C 0.06 0.95 5.34 -3.77 -0.02 0.93 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.55 6.78 -51.93 -0.35 0.19 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.75 6.12 -51.93 -0.32 0.43 16 38 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 39 H 0.06 0.53 6.62 -51.93 -0.34 0.19 16 40 H 0.05 0.62 6.36 -51.93 -0.33 0.29 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 1.07 5.99 -51.93 -0.31 0.76 16 43 H 0.05 1.10 6.63 -51.93 -0.34 0.76 16 44 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 45 H 0.03 0.75 8.12 -51.93 -0.42 0.33 16 46 H 0.03 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 48 H 0.05 1.04 6.76 -51.93 -0.35 0.69 16 49 H 0.07 1.31 8.13 -51.93 -0.42 0.89 16 50 H 0.07 1.04 6.17 -51.93 -0.32 0.72 16 51 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 379.54 15.07 5.72 5.72 Total: -1.00 -29.00 379.54 -11.51 -40.51 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -10.14 Total: -3.23 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -0.60 Total: -11.24 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: -1.46 Total: -48.50 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.00 -11.51 -40.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866591180.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.097 kcal (2) G-P(sol) polarization free energy of solvation -28.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds