Wall clock time and date at job start Tue Mar 31 2020 06:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.46618 * 2 1 4 4 C 1.53004 * 109.46678 * 240.00401 * 2 1 3 5 5 C 1.50695 * 109.47384 * 65.00186 * 4 2 1 6 6 H 1.08004 * 120.00169 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99793 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00302 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99631 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47049 * 60.00092 * 9 7 5 11 11 H 1.48505 * 109.46605 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47107 * 299.99709 * 9 7 5 13 13 C 1.52993 * 109.47237 * 120.00219 * 2 1 3 14 14 N 1.46905 * 109.47039 * 295.00079 * 13 2 1 15 15 C 1.46901 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.53119 * 109.51972 * 274.68316 * 15 14 13 17 17 C 1.53044 * 109.27722 * 182.44481 * 16 15 14 18 18 N 1.46837 * 109.52370 * 59.17648 * 17 16 15 19 19 C 1.46905 * 110.99826 * 174.16455 * 18 17 16 20 20 C 1.52999 * 109.47031 * 184.20915 * 19 18 17 21 21 C 1.52998 * 109.47053 * 304.20515 * 19 18 17 22 22 C 1.52992 * 109.47091 * 64.21092 * 19 18 17 23 23 C 1.46848 * 111.20057 * 298.25695 * 18 17 16 24 24 C 1.53040 * 109.52033 * 61.74393 * 23 18 17 25 25 H 1.08995 * 109.47462 * 60.00244 * 1 2 3 26 26 H 1.08999 * 109.46618 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46725 * 299.99546 * 1 2 3 28 28 H 1.09001 * 109.46592 * 184.99906 * 4 2 1 29 29 H 1.09003 * 109.47168 * 304.99277 * 4 2 1 30 30 H 0.96996 * 120.00329 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47393 * 175.00360 * 13 2 1 32 32 H 1.08998 * 109.47408 * 55.00006 * 13 2 1 33 33 H 1.00901 * 110.99869 * 56.04956 * 14 13 2 34 34 H 1.08998 * 109.52342 * 34.86980 * 15 14 13 35 35 H 1.09007 * 109.50520 * 302.37806 * 16 15 14 36 36 H 1.08996 * 109.50845 * 62.50045 * 16 15 14 37 37 H 1.09006 * 109.45707 * 299.15875 * 17 16 15 38 38 H 1.08998 * 109.46240 * 179.19433 * 17 16 15 39 39 H 1.09001 * 109.47675 * 59.99831 * 20 19 18 40 40 H 1.08999 * 109.47319 * 180.02562 * 20 19 18 41 41 H 1.08999 * 109.47377 * 299.99686 * 20 19 18 42 42 H 1.09009 * 109.46536 * 60.00341 * 21 19 18 43 43 H 1.08999 * 109.47198 * 179.97438 * 21 19 18 44 44 H 1.08999 * 109.47151 * 300.00589 * 21 19 18 45 45 H 1.08993 * 109.47684 * 59.99924 * 22 19 18 46 46 H 1.09008 * 109.47051 * 180.02562 * 22 19 18 47 47 H 1.09006 * 109.47358 * 299.99603 * 22 19 18 48 48 H 1.09001 * 109.46382 * 301.73402 * 23 18 17 49 49 H 1.08997 * 109.46386 * 181.75764 * 23 18 17 50 50 H 1.09000 * 109.50123 * 180.87970 * 24 23 18 51 51 H 1.08996 * 109.50327 * 60.76345 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0572 -2.4766 6 1 1.0800 0.9743 -2.3757 7 6 1.9932 -0.4016 -3.7283 8 7 2.6772 -1.5181 -3.8512 9 14 1.4984 0.5629 -5.2497 10 1 2.0896 1.9237 -5.1870 11 1 1.9946 -0.1365 -6.4621 12 1 0.0184 0.6684 -5.3092 13 6 2.0401 -0.7213 1.2491 14 7 1.6514 0.0374 2.4456 15 6 2.1259 -0.6266 3.6671 16 6 1.1104 -1.6876 4.1001 17 6 1.5799 -2.3333 5.4058 18 7 1.7106 -1.3028 6.4436 19 6 2.0257 -1.9045 7.7462 20 6 2.0505 -0.8139 8.8190 21 6 0.9595 -2.9433 8.0995 22 6 3.3954 -2.5826 7.6767 23 6 2.7150 -0.2984 6.0711 24 6 2.2793 0.4081 4.7853 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 3.1263 -0.7994 -1.2057 29 1 1.6054 -1.7198 -1.2953 30 1 2.9244 -1.8410 -4.7318 31 1 3.1264 -0.7994 1.2055 32 1 1.6055 -1.7198 1.2951 33 1 0.6529 0.1792 2.4753 34 1 3.0886 -1.0998 3.4740 35 1 0.1382 -1.2193 4.2547 36 1 1.0284 -2.4504 3.3258 37 1 2.5456 -2.8133 5.2468 38 1 0.8518 -3.0793 5.7244 39 1 1.0747 -0.3307 8.8686 40 1 2.2847 -1.2602 9.7855 41 1 2.8100 -0.0738 8.5674 42 1 0.9420 -3.7202 7.3350 43 1 1.1936 -3.3901 9.0657 44 1 -0.0163 -2.4601 8.1489 45 1 4.1550 -1.8425 7.4250 46 1 3.6291 -3.0294 8.6431 47 1 3.3779 -3.3596 6.9123 48 1 3.6753 -0.7879 5.9090 49 1 2.8113 0.4336 6.8729 50 1 3.0327 1.1426 4.5005 51 1 1.3257 0.9093 4.9507 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876949081.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:46 Heat of formation + Delta-G solvation = -23.541205 kcal Electronic energy + Delta-G solvation = -23179.453154 eV Core-core repulsion = 20112.431310 eV Total energy + Delta-G solvation = -3067.021844 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.10632 -37.47237 -35.42742 -33.15838 -31.80476 -31.20681 -29.21519 -27.63735 -27.56265 -26.78277 -25.36643 -23.32497 -22.82670 -21.92231 -20.26816 -19.13257 -18.72367 -16.59010 -16.37797 -15.33937 -15.06921 -14.90994 -14.51509 -14.41585 -14.35997 -13.96157 -13.91090 -13.38546 -13.18249 -12.82510 -12.50039 -12.44263 -12.14484 -12.09346 -11.96927 -11.88922 -11.69976 -11.39165 -11.32944 -11.29209 -11.01657 -10.96562 -10.84757 -10.74238 -10.52313 -10.38519 -10.27065 -10.09483 -9.67501 -9.10383 -8.93330 -8.41321 -8.30319 -8.00792 -5.95170 -3.96241 3.36225 3.40348 3.43066 3.64352 4.38308 4.48774 4.51878 4.63724 4.73257 4.88137 4.88657 5.08458 5.17838 5.22473 5.27880 5.38382 5.40489 5.44226 5.46952 5.49084 5.55353 5.58881 5.65239 5.67109 5.72191 5.77627 5.82714 5.87735 5.92927 6.00467 6.01729 6.08025 6.10548 6.21651 6.30531 6.36515 6.51781 6.60647 6.99066 6.99811 7.01211 7.14815 7.21474 7.46202 7.71927 7.75379 7.89651 8.05308 8.49373 9.10008 9.66951 11.16382 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.043764 B = 0.002629 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.637316 B =10649.725496 C =10752.170236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 H 0.064 0.936 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.065 3.935 14 N -0.685 5.685 15 C 0.087 3.913 16 C -0.145 4.145 17 C 0.055 3.945 18 N -0.524 5.524 19 C 0.100 3.900 20 C -0.139 4.139 21 C -0.141 4.141 22 C -0.182 4.182 23 C 0.051 3.949 24 C -0.102 4.102 25 H 0.062 0.938 26 H 0.040 0.960 27 H 0.032 0.968 28 H 0.014 0.986 29 H 0.013 0.987 30 H 0.260 0.740 31 H 0.064 0.936 32 H 0.022 0.978 33 H 0.339 0.661 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.057 0.943 48 H 0.034 0.966 49 H 0.077 0.923 50 H 0.071 0.929 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.430 -1.544 25.637 25.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.063 4.063 14 N -0.315 5.315 15 C -0.024 4.024 16 C -0.185 4.185 17 C -0.073 4.073 18 N -0.249 5.249 19 C 0.011 3.989 20 C -0.197 4.197 21 C -0.199 4.199 22 C -0.241 4.241 23 C -0.077 4.077 24 C -0.141 4.141 25 H 0.081 0.919 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.033 0.967 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.158 0.842 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.052 0.948 49 H 0.095 0.905 50 H 0.090 0.910 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.264 -0.986 25.485 25.536 hybrid contribution 0.002 -0.849 -1.014 1.323 sum -1.262 -1.835 24.471 24.572 Atomic orbital electron populations 1.21733 0.96711 1.00373 1.00240 1.21220 0.94839 1.00060 0.94192 0.91706 1.19102 0.96076 0.95333 0.90406 1.21210 1.34604 1.08265 0.91012 0.92621 1.25022 0.95352 0.95102 0.99087 1.69953 1.39068 1.21285 1.23450 0.86691 0.78858 0.80157 0.82489 1.20268 1.21397 1.20306 1.22144 1.00027 0.94518 0.89646 1.60668 1.19711 1.49963 1.01195 1.21601 0.97592 0.92843 0.90369 1.22336 1.00410 0.99473 0.96256 1.22105 0.99911 0.93811 0.91492 1.62192 1.47017 1.14247 1.01474 1.21057 0.93624 0.94214 0.90008 1.21890 1.02548 0.98060 0.97156 1.21929 0.98885 0.98034 1.01034 1.22502 0.98173 1.01146 1.02230 1.22199 0.92926 0.94722 0.97859 1.21552 1.02392 0.97672 0.92459 0.91938 0.94098 0.94939 0.96742 0.96821 0.93066 0.91744 0.95940 0.84225 0.91214 0.91086 0.91633 0.94830 0.90565 0.91767 0.92439 0.92450 0.92420 0.92384 0.91753 0.92291 0.92216 0.92437 0.94808 0.90470 0.91004 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.78 37.16 0.33 -2.20 16 2 C -0.08 -1.75 2.55 -90.62 -0.23 -1.98 16 3 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 4 C 0.03 0.74 4.45 -27.88 -0.12 0.61 16 5 C -0.51 -14.51 8.41 -34.44 -0.29 -14.80 16 6 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.26 13.29 55.43 0.74 -26.53 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.07 1.15 4.95 -3.82 -0.02 1.13 16 14 N -0.69 -10.21 6.25 -106.60 -0.67 -10.87 16 15 C 0.09 1.09 2.53 -67.59 -0.17 0.92 16 16 C -0.15 -1.67 5.35 -26.65 -0.14 -1.81 16 17 C 0.06 0.56 4.67 -3.84 -0.02 0.54 16 18 N -0.52 -5.04 4.47 -219.02 -0.98 -6.02 16 19 C 0.10 0.82 0.71 -131.60 -0.09 0.72 16 20 C -0.14 -1.01 8.25 37.16 0.31 -0.70 16 21 C -0.14 -1.05 8.12 37.16 0.30 -0.75 16 22 C -0.18 -1.43 7.79 37.15 0.29 -1.14 16 23 C 0.05 0.50 4.64 -3.83 -0.02 0.48 16 24 C -0.10 -1.14 5.70 -26.65 -0.15 -1.30 16 25 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.03 0.52 6.68 -51.93 -0.35 0.17 16 28 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.06 1.19 8.06 -51.93 -0.42 0.77 16 32 H 0.02 0.40 7.51 -51.93 -0.39 0.01 16 33 H 0.34 4.88 6.70 -39.29 -0.26 4.61 16 34 H 0.07 0.95 7.80 -51.93 -0.41 0.55 16 35 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 36 H 0.07 0.80 7.54 -51.93 -0.39 0.41 16 37 H 0.03 0.35 6.71 -51.93 -0.35 0.00 16 38 H 0.08 0.72 5.90 -51.93 -0.31 0.42 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.41 6.28 -51.93 -0.33 0.09 16 42 H 0.06 0.44 6.22 -51.92 -0.32 0.12 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.48 6.54 -51.93 -0.34 0.14 16 46 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 47 H 0.06 0.48 6.63 -51.93 -0.34 0.14 16 48 H 0.03 0.34 6.63 -51.93 -0.34 0.00 16 49 H 0.08 0.69 6.01 -51.93 -0.31 0.37 16 50 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 372.38 15.07 5.61 5.61 Total: -1.00 -29.20 372.38 -10.25 -39.45 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -9.80 Total: 0.25 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -0.13 Total: -18.76 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: -0.91 Total: -43.42 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.20 -10.25 -39.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876949081.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.905 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds