Wall clock time and date at job start Tue Mar 31 2020 06:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08990 * 109.47762 * 2 1 4 4 C 1.53005 * 109.47054 * 120.00165 * 2 1 3 5 5 C 1.50700 * 109.46892 * 295.00025 * 4 2 1 6 6 H 1.07996 * 120.00456 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99905 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00056 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99848 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47034 * 90.00516 * 9 7 5 11 11 H 1.48507 * 109.47278 * 210.00270 * 9 7 5 12 12 H 1.48497 * 109.47461 * 330.00394 * 9 7 5 13 13 C 1.53000 * 109.47079 * 239.99819 * 2 1 3 14 14 N 1.46890 * 109.47210 * 65.00158 * 13 2 1 15 15 C 1.46902 * 111.00252 * 179.97438 * 14 13 2 16 16 C 1.53119 * 109.52188 * 205.00381 * 15 14 13 17 17 C 1.53040 * 109.27806 * 182.44154 * 16 15 14 18 18 N 1.46845 * 109.52324 * 59.17604 * 17 16 15 19 19 C 1.46898 * 111.00112 * 174.16159 * 18 17 16 20 20 C 1.53006 * 109.47006 * 60.00236 * 19 18 17 21 21 C 1.52997 * 109.47123 * 300.00255 * 19 18 17 22 22 C 1.52999 * 109.47548 * 179.97438 * 19 18 17 23 23 C 1.46845 * 111.19880 * 298.26010 * 18 17 16 24 24 C 1.53040 * 109.52583 * 61.74289 * 23 18 17 25 25 H 1.08999 * 109.47037 * 300.00126 * 1 2 3 26 26 H 1.08999 * 109.47294 * 60.00105 * 1 2 3 27 27 H 1.09000 * 109.47812 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47218 * 54.99714 * 4 2 1 29 29 H 1.08991 * 109.47405 * 174.99567 * 4 2 1 30 30 H 0.96998 * 120.00083 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.47341 * 305.00238 * 13 2 1 32 32 H 1.09002 * 109.47171 * 185.00891 * 13 2 1 33 33 H 1.00905 * 111.00167 * 303.95821 * 14 13 2 34 34 H 1.08996 * 109.52134 * 325.12750 * 15 14 13 35 35 H 1.08999 * 109.51048 * 62.49967 * 16 15 14 36 36 H 1.09000 * 109.50490 * 302.37647 * 16 15 14 37 37 H 1.08997 * 109.45937 * 299.16391 * 17 16 15 38 38 H 1.08996 * 109.46427 * 179.19256 * 17 16 15 39 39 H 1.09001 * 109.47002 * 299.99782 * 20 19 18 40 40 H 1.08993 * 109.46955 * 60.00219 * 20 19 18 41 41 H 1.09000 * 109.47050 * 180.02562 * 20 19 18 42 42 H 1.09000 * 109.47140 * 179.97438 * 21 19 18 43 43 H 1.09001 * 109.47230 * 299.99079 * 21 19 18 44 44 H 1.09001 * 109.47375 * 59.99918 * 21 19 18 45 45 H 1.09001 * 109.47362 * 300.00739 * 22 19 18 46 46 H 1.09002 * 109.46716 * 60.00098 * 22 19 18 47 47 H 1.09000 * 109.47486 * 180.02562 * 22 19 18 48 48 H 1.09005 * 109.46424 * 181.75894 * 23 18 17 49 49 H 1.08996 * 109.46442 * 301.72335 * 23 18 17 50 50 H 1.08996 * 109.50428 * 180.87870 * 24 23 18 51 51 H 1.08998 * 109.49908 * 60.76158 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0806 0.9745 2.3757 7 6 1.9931 -0.4018 3.7283 8 7 1.6448 0.2772 4.7994 9 14 2.9635 -1.9884 3.9028 10 1 4.4169 -1.6850 3.8781 11 1 2.6161 -2.6421 5.1902 12 1 2.6289 -2.8995 2.7789 13 6 2.0399 -0.7213 -1.2492 14 7 1.6514 0.0373 -2.4456 15 6 2.1258 -0.6266 -3.6671 16 6 2.2794 0.4081 -4.7852 17 6 2.7150 -0.2983 -6.0711 18 7 1.7105 -1.3026 -6.4437 19 6 2.0256 -1.9042 -7.7462 20 6 3.3953 -2.5826 -7.6768 21 6 2.0504 -0.8137 -8.8190 22 6 0.9598 -2.9435 -8.0993 23 6 1.5797 -2.3332 -5.4058 24 6 1.1102 -1.6876 -4.1001 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3635 -1.0276 -0.0005 28 1 1.6053 -1.7199 1.2952 29 1 3.1262 -0.7996 1.2056 30 1 1.8920 -0.0458 5.6800 31 1 1.6053 -1.7199 -1.2952 32 1 3.1263 -0.7997 -1.2055 33 1 0.6528 0.1793 -2.4752 34 1 3.0884 -1.0999 -3.4740 35 1 3.0327 1.1426 -4.5005 36 1 1.3257 0.9094 -4.9507 37 1 3.6752 -0.7878 -5.9090 38 1 2.8114 0.4338 -6.8728 39 1 4.1550 -1.8425 -7.4251 40 1 3.3776 -3.3595 -6.9125 41 1 3.6293 -3.0286 -8.6434 42 1 2.2847 -1.2600 -9.7855 43 1 1.0746 -0.3305 -8.8686 44 1 2.8101 -0.0736 -8.5674 45 1 0.9425 -3.7204 -7.3349 46 1 -0.0162 -2.4606 -8.1486 47 1 1.1938 -3.3902 -9.0656 48 1 0.8516 -3.0792 -5.7245 49 1 2.5453 -2.8132 -5.2469 50 1 1.0282 -2.4504 -3.3259 51 1 0.1382 -1.2193 -4.2548 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876949083.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:48 Heat of formation + Delta-G solvation = -19.877910 kcal Electronic energy + Delta-G solvation = -23240.860622 eV Core-core repulsion = 20173.997630 eV Total energy + Delta-G solvation = -3066.862991 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.15578 -37.56165 -35.53719 -33.17503 -31.87666 -31.25744 -29.38817 -27.67654 -27.60061 -27.31210 -25.42765 -23.24719 -22.87793 -21.69706 -20.32252 -19.16637 -18.80240 -16.80210 -16.61448 -15.45406 -15.12448 -14.99351 -14.54533 -14.48065 -14.18906 -14.01651 -13.94842 -13.41252 -13.29682 -12.89312 -12.83750 -12.34478 -12.22981 -12.15163 -12.03492 -11.98806 -11.85113 -11.67589 -11.39967 -11.35419 -11.09034 -11.02178 -10.95256 -10.72664 -10.50816 -10.43944 -10.31158 -9.87209 -9.63906 -9.37823 -9.02744 -8.49314 -8.45823 -8.08913 -5.99716 -3.96366 3.32845 3.40102 3.43769 3.59898 4.32278 4.45153 4.48808 4.59285 4.67934 4.82842 4.84309 5.02657 5.12822 5.17359 5.23740 5.33876 5.34430 5.39299 5.42774 5.43867 5.50357 5.55232 5.60039 5.61288 5.67219 5.69491 5.72148 5.80295 5.87483 5.95675 5.96725 5.98881 6.04259 6.15702 6.21466 6.29523 6.41878 6.50233 6.82602 6.94794 6.95463 7.00899 7.09684 7.31563 7.35110 7.53409 7.68420 7.85580 8.60185 9.06326 9.63329 11.13789 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.035178 B = 0.002841 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.753802 B = 9852.797017 C =10097.545969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.076 4.076 3 H 0.071 0.929 4 C -0.009 4.009 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.063 3.937 14 N -0.684 5.684 15 C 0.087 3.913 16 C -0.102 4.102 17 C 0.051 3.949 18 N -0.525 5.525 19 C 0.101 3.899 20 C -0.182 4.182 21 C -0.139 4.139 22 C -0.142 4.142 23 C 0.055 3.945 24 C -0.145 4.145 25 H 0.067 0.933 26 H 0.034 0.966 27 H 0.039 0.961 28 H 0.013 0.987 29 H 0.010 0.990 30 H 0.262 0.738 31 H 0.022 0.978 32 H 0.064 0.936 33 H 0.340 0.660 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.033 0.967 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.064 0.936 47 H 0.057 0.943 48 H 0.076 0.924 49 H 0.033 0.967 50 H 0.064 0.936 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.834 -5.579 -28.079 28.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.094 4.094 3 H 0.089 0.911 4 C -0.046 4.046 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.066 4.066 14 N -0.314 5.314 15 C -0.024 4.024 16 C -0.141 4.141 17 C -0.077 4.077 18 N -0.249 5.249 19 C 0.011 3.989 20 C -0.241 4.241 21 C -0.197 4.197 22 C -0.199 4.199 23 C -0.073 4.073 24 C -0.185 4.185 25 H 0.086 0.914 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.031 0.969 29 H 0.028 0.972 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.160 0.840 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.052 0.948 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.083 0.917 47 H 0.076 0.924 48 H 0.095 0.905 49 H 0.051 0.949 50 H 0.083 0.917 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.927 -4.905 -27.868 28.311 hybrid contribution 0.761 -2.112 0.362 2.274 sum 1.688 -7.016 -27.505 28.436 Atomic orbital electron populations 1.21737 0.96227 1.00444 1.00803 1.21024 0.95228 1.00157 0.93033 0.91092 1.19601 0.95533 0.96015 0.93486 1.21143 1.35262 1.09474 0.89095 0.90811 1.25034 0.95732 0.96893 0.95977 1.69916 1.47279 1.39312 0.97991 0.86805 0.80668 0.84545 0.77386 1.20390 1.21522 1.19153 1.22169 0.99966 0.94559 0.89903 1.60633 1.19895 1.49838 1.01076 1.21606 0.97542 0.92891 0.90362 1.21553 1.02481 0.97644 0.92409 1.22198 0.92891 0.94730 0.97883 1.62185 1.47041 1.14235 1.01475 1.21059 0.93613 0.94223 0.89989 1.22504 0.98187 1.01131 1.02231 1.21892 1.02580 0.98050 0.97154 1.21931 0.98909 0.98017 1.01041 1.22102 0.99879 0.93830 0.91498 1.22335 1.00473 0.99428 0.96255 0.91389 0.94679 0.94151 0.96867 0.97201 0.92858 0.95946 0.91774 0.84034 0.91251 0.90956 0.91178 0.94835 0.90419 0.92299 0.92472 0.92191 0.92417 0.91735 0.92436 0.92444 0.91727 0.92361 0.90549 0.94878 0.91705 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.77 37.15 0.33 -2.17 16 2 C -0.08 -1.50 2.55 -90.62 -0.23 -1.73 16 3 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 4 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 5 C -0.51 -14.58 8.96 -34.44 -0.31 -14.89 16 6 H 0.07 2.25 7.30 -52.49 -0.38 1.87 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.19 13.96 55.43 0.77 -27.42 16 9 Si 0.88 22.02 27.47 -169.99 -4.67 17.36 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 13 C 0.06 1.04 4.94 -3.83 -0.02 1.02 16 14 N -0.68 -9.71 6.25 -106.60 -0.67 -10.37 16 15 C 0.09 1.04 2.53 -67.59 -0.17 0.86 16 16 C -0.10 -1.10 5.70 -26.65 -0.15 -1.25 16 17 C 0.05 0.48 4.64 -3.83 -0.02 0.46 16 18 N -0.52 -4.84 4.47 -219.02 -0.98 -5.82 16 19 C 0.10 0.78 0.71 -131.60 -0.09 0.69 16 20 C -0.18 -1.36 7.78 37.16 0.29 -1.07 16 21 C -0.14 -0.97 8.25 37.16 0.31 -0.67 16 22 C -0.14 -1.01 8.12 37.16 0.30 -0.71 16 23 C 0.06 0.53 4.67 -3.83 -0.02 0.51 16 24 C -0.15 -1.58 5.35 -26.65 -0.14 -1.72 16 25 H 0.07 1.42 6.95 -51.93 -0.36 1.06 16 26 H 0.03 0.55 6.68 -51.93 -0.35 0.20 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 29 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.02 0.36 7.51 -51.93 -0.39 -0.03 16 32 H 0.06 1.09 8.06 -51.93 -0.42 0.67 16 33 H 0.34 4.69 6.70 -39.29 -0.26 4.43 16 34 H 0.07 0.89 7.80 -51.93 -0.41 0.48 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.03 0.32 6.63 -51.93 -0.34 -0.02 16 38 H 0.08 0.66 6.01 -51.93 -0.31 0.35 16 39 H 0.06 0.46 6.54 -51.93 -0.34 0.12 16 40 H 0.06 0.46 6.63 -51.93 -0.34 0.11 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.40 6.28 -51.93 -0.33 0.07 16 45 H 0.06 0.42 6.22 -51.93 -0.32 0.10 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.08 0.69 5.90 -51.93 -0.31 0.39 16 49 H 0.03 0.33 6.71 -51.93 -0.35 -0.02 16 50 H 0.06 0.74 7.54 -51.93 -0.39 0.35 16 51 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 LS Contribution 368.78 15.07 5.56 5.56 Total: -1.00 -29.65 368.78 -9.87 -39.52 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -9.76 Total: 0.36 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -0.12 Total: -19.18 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -0.87 Total: -43.61 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.65 -9.87 -39.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876949083.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.638 kcal (2) G-P(sol) polarization free energy of solvation -29.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds