Wall clock time and date at job start Tue Mar 31 2020 05:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00037 * 2 1 4 4 C 1.53005 * 109.47291 * 150.00059 * 3 2 1 5 5 C 1.53001 * 109.47080 * 180.02562 * 4 3 2 6 6 C 1.53007 * 109.47133 * 299.99779 * 5 4 3 7 7 C 1.52992 * 109.46785 * 180.02562 * 6 5 4 8 8 N 1.46904 * 109.47021 * 178.80586 * 7 6 5 9 9 C 1.46894 * 111.00235 * 184.41739 * 8 7 6 10 10 C 1.53239 * 109.34088 * 187.25262 * 9 8 7 11 11 N 1.47077 * 108.52524 * 306.17546 * 10 9 8 12 12 C 1.36938 * 120.88449 * 231.18988 * 11 10 9 13 13 H 1.07994 * 120.00678 * 150.30462 * 12 11 10 14 14 C 1.38812 * 119.99363 * 330.58041 * 12 11 10 15 15 N 1.31620 * 119.99835 * 164.67383 * 14 12 11 16 16 Si 1.86802 * 120.00185 * 344.66828 * 14 12 11 17 17 H 1.48490 * 109.47113 * 88.34088 * 16 14 12 18 18 H 1.48507 * 109.46808 * 208.34010 * 16 14 12 19 19 H 1.48498 * 109.46884 * 328.33548 * 16 14 12 20 20 C 1.47083 * 118.23930 * 51.44814 * 11 10 9 21 21 C 1.46903 * 110.99896 * 308.72286 * 8 7 6 22 22 C 1.52998 * 109.46729 * 60.00199 * 6 5 4 23 23 C 1.53002 * 109.47450 * 299.99554 * 22 6 5 24 24 H 1.09001 * 109.47046 * 59.99636 * 1 2 3 25 25 H 1.08999 * 109.46804 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46903 * 299.99786 * 1 2 3 27 27 H 1.09001 * 109.47356 * 30.00263 * 3 2 1 28 28 H 1.08996 * 109.46941 * 60.00288 * 4 3 2 29 29 H 1.08994 * 109.46855 * 300.00157 * 4 3 2 30 30 H 1.09000 * 109.46916 * 180.02562 * 5 4 3 31 31 H 1.08996 * 109.47282 * 60.00149 * 5 4 3 32 32 H 1.09000 * 109.46622 * 300.00439 * 6 5 4 33 33 H 1.08994 * 109.47580 * 58.80953 * 7 6 5 34 34 H 1.09001 * 109.47368 * 298.80296 * 7 6 5 35 35 H 1.08998 * 109.49344 * 67.29893 * 9 8 7 36 36 H 1.08998 * 109.49810 * 307.21300 * 9 8 7 37 37 H 1.09002 * 109.63179 * 186.46121 * 10 9 8 38 38 H 1.09004 * 109.62927 * 65.88209 * 10 9 8 39 39 H 0.97002 * 120.00092 * 180.02562 * 15 14 12 40 40 H 1.09007 * 109.62380 * 68.25514 * 20 11 10 41 41 H 1.08997 * 109.63060 * 188.83509 * 20 11 10 42 42 H 1.08998 * 109.49285 * 292.70113 * 21 8 7 43 43 H 1.09004 * 109.49002 * 52.78669 * 21 8 7 44 44 H 1.08995 * 109.47559 * 60.00247 * 22 6 5 45 45 H 1.09002 * 109.46907 * 180.02562 * 22 6 5 46 46 H 1.08995 * 109.47305 * 300.00849 * 23 22 6 47 47 H 1.09000 * 109.47215 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3589 1.2633 0.7213 5 6 3.9809 2.6612 0.7218 6 6 4.1883 3.1277 -0.7206 7 6 4.8108 4.5252 -0.7200 8 7 5.0363 4.9614 -2.1045 9 6 5.7295 6.2559 -2.1424 10 6 5.7841 6.7603 -3.5883 11 7 6.3813 5.7103 -4.4273 12 6 7.4262 5.9908 -5.2668 13 1 8.1513 5.2255 -5.5010 14 6 7.5565 7.2605 -5.8123 15 7 8.6943 7.6264 -6.3636 16 14 6.1170 8.4501 -5.7640 17 1 6.1557 9.2228 -4.4966 18 1 6.2073 9.3833 -6.9157 19 1 4.8438 7.6898 -5.8417 20 6 5.8229 4.3521 -4.3450 21 6 5.7706 3.9413 -2.8649 22 6 2.8396 3.1698 -1.4418 23 6 2.2176 1.7720 -1.4424 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.3450 1.9994 0.5139 28 1 4.0242 0.5694 0.2074 29 1 3.2112 0.9313 1.7488 30 1 4.9420 2.6310 1.2352 31 1 3.3156 3.3547 1.2359 32 1 4.8537 2.4340 -1.2346 33 1 5.7617 4.4992 -0.1879 34 1 4.1362 5.2233 -0.2245 35 1 6.7434 6.1370 -1.7603 36 1 5.1903 6.9755 -1.5263 37 1 6.3953 7.6614 -3.6391 38 1 4.7751 6.9788 -3.9383 39 1 8.7855 8.5138 -6.7445 40 1 4.8175 4.3435 -4.7662 41 1 6.4597 3.6602 -4.8962 42 1 6.7839 3.8545 -2.4727 43 1 5.2610 2.9821 -2.7728 44 1 2.1742 3.8634 -0.9278 45 1 2.9874 3.5017 -2.4695 46 1 2.8830 1.0784 -1.9564 47 1 1.2570 1.8019 -1.9566 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891902206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:55 Heat of formation + Delta-G solvation = -26.607516 kcal Electronic energy + Delta-G solvation = -23498.668858 eV Core-core repulsion = 20295.680954 eV Total energy + Delta-G solvation = -3202.987904 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.74652 -38.35711 -36.68961 -34.38878 -31.75299 -30.95847 -30.69852 -30.09561 -27.39279 -26.37902 -24.17462 -23.37978 -22.80800 -22.13362 -20.94204 -20.00378 -19.13745 -16.83684 -16.79761 -16.01671 -15.58996 -15.35302 -14.78475 -14.62404 -14.47564 -14.07074 -14.03832 -13.76110 -13.57791 -13.23524 -12.79921 -12.58259 -12.31607 -12.18073 -12.09589 -11.90276 -11.65281 -11.52885 -11.24226 -11.09141 -10.87788 -10.73699 -10.57076 -10.41400 -10.29818 -10.18120 -10.00744 -9.70889 -9.57507 -9.44382 -8.62578 -7.91747 -6.87822 -5.91370 -3.31473 3.32958 3.49885 3.50972 3.54068 4.20735 4.53581 4.54918 4.64551 4.75408 4.91555 5.02983 5.03904 5.10067 5.14589 5.18148 5.31897 5.35655 5.37887 5.39340 5.42267 5.56307 5.65253 5.71074 5.76613 5.82274 5.88007 5.92241 5.96166 6.01835 6.04877 6.07188 6.11951 6.15958 6.27465 6.38662 6.40724 6.49142 6.61871 6.68493 6.91715 7.00241 7.49766 7.53164 8.00760 8.36640 8.96379 9.74276 10.15154 11.25002 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035307 B = 0.003528 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.857747 B = 7935.504425 C = 8055.416100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.089 3.911 4 C -0.113 4.113 5 C -0.110 4.110 6 C -0.091 4.091 7 C 0.059 3.941 8 N -0.531 5.531 9 C 0.044 3.956 10 C 0.127 3.873 11 N -0.610 5.610 12 C -0.258 4.258 13 H 0.084 0.916 14 C 0.020 3.980 15 N -0.915 5.915 16 Si 0.893 3.107 17 H -0.288 1.288 18 H -0.305 1.305 19 H -0.270 1.270 20 C 0.152 3.848 21 C 0.036 3.964 22 C -0.103 4.103 23 C -0.141 4.141 24 H 0.041 0.959 25 H 0.083 0.917 26 H 0.039 0.961 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.027 0.973 34 H 0.069 0.931 35 H 0.034 0.966 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.033 0.967 39 H 0.262 0.738 40 H 0.029 0.971 41 H 0.063 0.937 42 H 0.030 0.970 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.069 0.931 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.714 -11.566 15.498 24.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C 0.031 3.969 4 C -0.151 4.151 5 C -0.148 4.148 6 C -0.109 4.109 7 C -0.069 4.069 8 N -0.256 5.256 9 C -0.085 4.085 10 C 0.001 3.999 11 N -0.334 5.334 12 C -0.386 4.386 13 H 0.102 0.898 14 C -0.178 4.178 15 N -0.559 5.559 16 Si 0.724 3.276 17 H -0.216 1.216 18 H -0.233 1.233 19 H -0.195 1.195 20 C 0.026 3.974 21 C -0.093 4.093 22 C -0.140 4.140 23 C -0.178 4.178 24 H 0.059 0.941 25 H 0.101 0.899 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.047 0.953 41 H 0.082 0.918 42 H 0.048 0.952 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.101 0.899 46 H 0.088 0.912 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.944 -11.545 15.155 24.213 hybrid contribution -0.148 0.939 0.410 1.036 sum -15.091 -10.606 15.565 24.135 Atomic orbital electron populations 1.22752 0.81419 1.02472 0.99863 1.87898 1.19374 1.28382 1.95120 1.22218 0.94740 0.83904 0.95999 1.21553 0.95374 0.97753 1.00385 1.21526 1.00785 0.95641 0.96875 1.21322 0.97555 0.96591 0.95460 1.22138 0.98677 0.95758 0.90304 1.61970 1.49003 1.03356 1.11285 1.22604 0.96014 0.90446 0.99468 1.21490 0.97045 0.92774 0.88570 1.44404 1.38100 1.04809 1.46133 1.18939 1.00470 0.98474 1.20741 0.89805 1.25346 0.96930 0.97861 0.97669 1.69787 1.23736 1.19970 1.42383 0.86857 0.84394 0.80647 0.75703 1.21601 1.23348 1.19464 1.21106 0.96858 0.87200 0.92207 1.22820 0.95537 0.94371 0.96588 1.21437 0.95201 0.95014 1.02383 1.22061 1.01319 0.98016 0.96452 0.94069 0.89875 0.94270 0.92425 0.91094 0.91617 0.91486 0.91880 0.90540 0.95434 0.91283 0.94803 0.91845 0.90814 0.94931 0.92788 0.95269 0.91824 0.95164 0.90983 0.92356 0.89906 0.91203 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.34 16 2 O -0.39 -4.14 10.35 -35.23 -0.36 -4.50 16 3 C 0.09 0.86 2.61 -26.72 -0.07 0.79 16 4 C -0.11 -1.04 5.57 -26.73 -0.15 -1.19 16 5 C -0.11 -1.00 5.20 -26.73 -0.14 -1.14 16 6 C -0.09 -0.99 1.69 -90.62 -0.15 -1.14 16 7 C 0.06 0.76 4.56 -3.83 -0.02 0.75 16 8 N -0.53 -8.62 4.04 -234.03 -0.95 -9.57 16 9 C 0.04 0.81 5.61 -3.70 -0.02 0.79 16 10 C 0.13 2.84 4.31 -3.60 -0.02 2.82 16 11 N -0.61 -14.87 2.80 -171.73 -0.48 -15.35 16 12 C -0.26 -7.34 10.09 -15.06 -0.15 -7.50 16 13 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 14 C 0.02 0.60 5.32 -17.43 -0.09 0.51 16 15 N -0.92 -28.48 13.97 55.49 0.78 -27.71 16 16 Si 0.89 22.90 24.23 -169.99 -4.12 18.78 16 17 H -0.29 -7.06 6.49 56.52 0.37 -6.70 16 18 H -0.31 -7.94 7.11 56.52 0.40 -7.54 16 19 H -0.27 -6.84 6.52 56.52 0.37 -6.47 16 20 C 0.15 3.08 6.72 -3.36 -0.02 3.06 16 21 C 0.04 0.60 5.02 -3.46 -0.02 0.59 16 22 C -0.10 -1.12 4.93 -26.73 -0.13 -1.26 16 23 C -0.14 -1.43 5.54 -26.73 -0.15 -1.58 16 24 H 0.04 0.29 7.87 -51.93 -0.41 -0.11 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 27 H 0.06 0.52 7.79 -51.93 -0.40 0.11 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.90 6.09 -51.93 -0.32 0.58 16 33 H 0.03 0.36 8.13 -51.93 -0.42 -0.06 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 1.02 8.11 -51.93 -0.42 0.60 16 37 H 0.07 1.78 4.55 -51.93 -0.24 1.55 16 38 H 0.03 0.74 6.80 -51.93 -0.35 0.39 16 39 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 1.27 7.95 -51.93 -0.41 0.86 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.07 1.04 5.51 -51.93 -0.29 0.75 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 1.07 7.33 -51.93 -0.38 0.69 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.06 0.59 7.87 -51.93 -0.41 0.19 16 LS Contribution 345.52 15.07 5.21 5.21 Total: -1.00 -31.12 345.52 -8.71 -39.83 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -8.75 Total: -3.52 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -0.04 Total: -3.17 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.65 Total: -52.62 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: -0.36 Total: -4.50 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.12 Total: 18.78 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.12 -8.71 -39.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891902206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.224 kcal (2) G-P(sol) polarization free energy of solvation -31.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds