Wall clock time and date at job start Tue Mar 31 2020 05:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00037 * 2 1 4 4 C 1.53005 * 109.47291 * 150.00059 * 3 2 1 5 5 C 1.53001 * 109.47080 * 180.02562 * 4 3 2 6 6 C 1.53007 * 109.47133 * 299.99779 * 5 4 3 7 7 C 1.52992 * 109.46785 * 180.02562 * 6 5 4 8 8 N 1.46904 * 109.47021 * 178.80586 * 7 6 5 9 9 C 1.46894 * 111.00235 * 184.41739 * 8 7 6 10 10 C 1.53239 * 109.34088 * 187.25262 * 9 8 7 11 11 N 1.47077 * 108.52524 * 306.17546 * 10 9 8 12 12 C 1.36938 * 120.88449 * 231.18988 * 11 10 9 13 13 H 1.07994 * 120.00678 * 150.30462 * 12 11 10 14 14 C 1.38812 * 119.99363 * 330.58041 * 12 11 10 15 15 N 1.31620 * 119.99835 * 164.67383 * 14 12 11 16 16 Si 1.86802 * 120.00185 * 344.66828 * 14 12 11 17 17 H 1.48490 * 109.47113 * 88.34088 * 16 14 12 18 18 H 1.48507 * 109.46808 * 208.34010 * 16 14 12 19 19 H 1.48498 * 109.46884 * 328.33548 * 16 14 12 20 20 C 1.47083 * 118.23930 * 51.44814 * 11 10 9 21 21 C 1.46903 * 110.99896 * 308.72286 * 8 7 6 22 22 C 1.52998 * 109.46729 * 60.00199 * 6 5 4 23 23 C 1.53002 * 109.47450 * 299.99554 * 22 6 5 24 24 H 1.09001 * 109.47046 * 59.99636 * 1 2 3 25 25 H 1.08999 * 109.46804 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46903 * 299.99786 * 1 2 3 27 27 H 1.09001 * 109.47356 * 30.00263 * 3 2 1 28 28 H 1.08996 * 109.46941 * 60.00288 * 4 3 2 29 29 H 1.08994 * 109.46855 * 300.00157 * 4 3 2 30 30 H 1.09000 * 109.46916 * 180.02562 * 5 4 3 31 31 H 1.08996 * 109.47282 * 60.00149 * 5 4 3 32 32 H 1.09000 * 109.46622 * 300.00439 * 6 5 4 33 33 H 1.08994 * 109.47580 * 58.80953 * 7 6 5 34 34 H 1.09001 * 109.47368 * 298.80296 * 7 6 5 35 35 H 1.08998 * 109.49344 * 67.29893 * 9 8 7 36 36 H 1.08998 * 109.49810 * 307.21300 * 9 8 7 37 37 H 1.09002 * 109.63179 * 186.46121 * 10 9 8 38 38 H 1.09004 * 109.62927 * 65.88209 * 10 9 8 39 39 H 0.97002 * 120.00092 * 180.02562 * 15 14 12 40 40 H 1.09007 * 109.62380 * 68.25514 * 20 11 10 41 41 H 1.08997 * 109.63060 * 188.83509 * 20 11 10 42 42 H 1.08998 * 109.49285 * 292.70113 * 21 8 7 43 43 H 1.09004 * 109.49002 * 52.78669 * 21 8 7 44 44 H 1.08995 * 109.47559 * 60.00247 * 22 6 5 45 45 H 1.09002 * 109.46907 * 180.02562 * 22 6 5 46 46 H 1.08995 * 109.47305 * 300.00849 * 23 22 6 47 47 H 1.09000 * 109.47215 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3589 1.2633 0.7213 5 6 3.9809 2.6612 0.7218 6 6 4.1883 3.1277 -0.7206 7 6 4.8108 4.5252 -0.7200 8 7 5.0363 4.9614 -2.1045 9 6 5.7295 6.2559 -2.1424 10 6 5.7841 6.7603 -3.5883 11 7 6.3813 5.7103 -4.4273 12 6 7.4262 5.9908 -5.2668 13 1 8.1513 5.2255 -5.5010 14 6 7.5565 7.2605 -5.8123 15 7 8.6943 7.6264 -6.3636 16 14 6.1170 8.4501 -5.7640 17 1 6.1557 9.2228 -4.4966 18 1 6.2073 9.3833 -6.9157 19 1 4.8438 7.6898 -5.8417 20 6 5.8229 4.3521 -4.3450 21 6 5.7706 3.9413 -2.8649 22 6 2.8396 3.1698 -1.4418 23 6 2.2176 1.7720 -1.4424 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.3450 1.9994 0.5139 28 1 4.0242 0.5694 0.2074 29 1 3.2112 0.9313 1.7488 30 1 4.9420 2.6310 1.2352 31 1 3.3156 3.3547 1.2359 32 1 4.8537 2.4340 -1.2346 33 1 5.7617 4.4992 -0.1879 34 1 4.1362 5.2233 -0.2245 35 1 6.7434 6.1370 -1.7603 36 1 5.1903 6.9755 -1.5263 37 1 6.3953 7.6614 -3.6391 38 1 4.7751 6.9788 -3.9383 39 1 8.7855 8.5138 -6.7445 40 1 4.8175 4.3435 -4.7662 41 1 6.4597 3.6602 -4.8962 42 1 6.7839 3.8545 -2.4727 43 1 5.2610 2.9821 -2.7728 44 1 2.1742 3.8634 -0.9278 45 1 2.9874 3.5017 -2.4695 46 1 2.8830 1.0784 -1.9564 47 1 1.2570 1.8019 -1.9566 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891902206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:54 Heat of formation + Delta-G solvation = -47.107575 kcal Electronic energy + Delta-G solvation = -23499.557807 eV Core-core repulsion = 20295.680954 eV Total energy + Delta-G solvation = -3203.876853 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.69036 -39.56741 -37.74582 -35.91745 -33.69983 -32.15930 -31.70091 -31.41889 -28.68693 -27.32326 -25.63751 -24.80775 -23.95595 -23.39581 -21.97125 -21.16631 -20.38495 -18.80830 -17.53958 -17.40726 -16.81141 -16.15582 -16.02300 -15.90917 -15.88492 -15.73009 -15.36159 -14.71823 -14.63485 -14.52979 -14.27103 -13.97210 -13.67522 -13.50417 -13.13123 -12.95932 -12.81331 -12.73401 -12.43823 -12.32443 -12.17394 -11.97921 -11.90360 -11.65796 -11.60126 -11.54248 -11.28813 -11.21572 -11.11406 -10.70105 -10.32013 -9.29521 -8.84497 -8.17659 -5.54582 1.28601 1.40779 1.50798 2.40208 2.85069 2.92379 3.09787 3.34536 3.76932 3.82368 3.89360 4.14250 4.18333 4.23281 4.30565 4.35285 4.42497 4.46994 4.51482 4.53040 4.55473 4.56594 4.61095 4.62240 4.70620 4.78736 4.83942 4.85380 4.89280 4.95425 5.01833 5.02669 5.07489 5.16584 5.20246 5.28076 5.29166 5.35625 5.54723 5.60053 5.83800 6.09239 6.15365 6.27030 6.34184 6.89185 7.58956 8.02793 9.02547 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035307 B = 0.003528 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.857747 B = 7935.504425 C = 8055.416100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.089 3.911 4 C -0.111 4.111 5 C -0.103 4.103 6 C -0.085 4.085 7 C 0.062 3.938 8 N -0.533 5.533 9 C 0.053 3.947 10 C 0.122 3.878 11 N -0.625 5.625 12 C -0.250 4.250 13 H 0.049 0.951 14 C -0.038 4.038 15 N -0.963 5.963 16 Si 0.958 3.042 17 H -0.268 1.268 18 H -0.311 1.311 19 H -0.264 1.264 20 C 0.147 3.853 21 C 0.050 3.950 22 C -0.096 4.096 23 C -0.136 4.136 24 H 0.044 0.956 25 H 0.094 0.906 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.028 0.972 34 H 0.085 0.915 35 H 0.021 0.979 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.036 0.964 39 H 0.262 0.738 40 H 0.036 0.964 41 H 0.056 0.944 42 H 0.016 0.984 43 H 0.100 0.900 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.269 -11.756 17.868 27.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C 0.032 3.968 4 C -0.149 4.149 5 C -0.141 4.141 6 C -0.104 4.104 7 C -0.066 4.066 8 N -0.258 5.258 9 C -0.076 4.076 10 C -0.003 4.003 11 N -0.351 5.351 12 C -0.379 4.379 13 H 0.067 0.933 14 C -0.232 4.232 15 N -0.609 5.609 16 Si 0.787 3.213 17 H -0.195 1.195 18 H -0.240 1.240 19 H -0.188 1.188 20 C 0.022 3.978 21 C -0.079 4.079 22 C -0.134 4.134 23 C -0.174 4.174 24 H 0.062 0.938 25 H 0.112 0.888 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.103 0.897 35 H 0.039 0.961 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.034 0.966 43 H 0.118 0.882 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.535 -11.764 17.568 27.468 hybrid contribution 0.642 0.872 -0.312 1.127 sum -16.892 -10.892 17.256 26.491 Atomic orbital electron populations 1.22925 0.80061 1.03525 1.00575 1.87871 1.20991 1.28934 1.95206 1.22238 0.95157 0.83918 0.95521 1.21533 0.94997 0.97608 1.00714 1.21461 1.01436 0.95682 0.95474 1.21268 0.97137 0.95190 0.96814 1.22223 0.99203 0.97126 0.88004 1.61952 1.47912 1.02379 1.13527 1.22416 0.96209 0.92209 0.96774 1.21518 0.96211 0.91725 0.90844 1.44550 1.37611 1.06826 1.46083 1.18869 1.00720 0.97582 1.20773 0.93344 1.26015 0.99242 0.99928 0.98042 1.69928 1.25818 1.20674 1.44489 0.85789 0.80935 0.78427 0.76112 1.19485 1.24033 1.18839 1.21275 0.96572 0.85130 0.94842 1.22621 0.95395 0.95757 0.94104 1.21349 0.95376 0.95484 1.01199 1.22002 1.01066 0.97321 0.97026 0.93760 0.88802 0.93103 0.91334 0.92095 0.90764 0.90902 0.90629 0.91513 0.95370 0.89682 0.96100 0.88833 0.92832 0.94616 0.92892 0.94617 0.92515 0.96577 0.88217 0.91547 0.91899 0.92366 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.82 113.37 1.23 1.56 16 2 O -0.41 -7.91 10.35 -148.98 -1.54 -9.45 16 3 C 0.09 1.50 2.61 30.60 0.08 1.58 16 4 C -0.11 -1.76 5.57 30.60 0.17 -1.59 16 5 C -0.10 -1.53 5.20 30.60 0.16 -1.37 16 6 C -0.09 -1.62 1.69 -10.79 -0.02 -1.64 16 7 C 0.06 1.38 4.56 86.30 0.39 1.78 16 8 N -0.53 -15.93 4.04 -894.34 -3.62 -19.54 16 9 C 0.05 1.83 5.61 86.38 0.48 2.32 16 10 C 0.12 5.28 4.31 86.35 0.37 5.65 16 11 N -0.63 -30.47 2.80 -697.23 -1.95 -32.42 16 12 C -0.25 -14.62 10.09 84.03 0.85 -13.77 16 13 H 0.05 3.11 8.06 -2.91 -0.02 3.08 16 14 C -0.04 -2.27 5.32 84.86 0.45 -1.82 16 15 N -0.96 -61.75 13.97 21.65 0.30 -61.45 16 16 Si 0.96 47.73 24.23 68.60 1.66 49.39 16 17 H -0.27 -12.40 6.49 99.48 0.65 -11.75 16 18 H -0.31 -15.70 7.11 99.48 0.71 -14.99 16 19 H -0.26 -12.73 6.52 99.48 0.65 -12.08 16 20 C 0.15 5.88 6.72 86.50 0.58 6.46 16 21 C 0.05 1.62 5.02 86.54 0.43 2.05 16 22 C -0.10 -1.85 4.93 30.59 0.15 -1.70 16 23 C -0.14 -2.49 5.54 30.60 0.17 -2.32 16 24 H 0.04 0.54 7.87 -2.39 -0.02 0.52 16 25 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.05 0.54 8.08 -2.39 -0.02 0.52 16 27 H 0.07 1.01 7.79 -2.39 -0.02 0.99 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.41 6.09 -2.39 -0.01 1.39 16 33 H 0.03 0.65 8.13 -2.39 -0.02 0.63 16 34 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.09 2.66 8.11 -2.39 -0.02 2.64 16 37 H 0.05 2.52 4.55 -2.39 -0.01 2.51 16 38 H 0.04 1.54 6.80 -2.39 -0.02 1.52 16 39 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 40 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.06 2.30 7.95 -2.39 -0.02 2.28 16 42 H 0.02 0.56 8.14 -2.39 -0.02 0.55 16 43 H 0.10 2.68 5.51 -2.38 -0.01 2.66 16 44 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.06 1.48 7.33 -2.39 -0.02 1.46 16 46 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.06 1.11 7.87 -2.39 -0.02 1.09 16 Total: -1.00 -68.05 345.52 1.15 -66.90 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.79 Total: 9.38 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 5.51 Total: -2.81 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -5.26 Total: -113.41 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -1.54 Total: -9.45 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 1.66 Total: 49.39 kcal Total: -68.05 1.15 -66.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891902206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.797 kcal (2) G-P(sol) polarization free energy of solvation -68.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds