Wall clock time and date at job start Tue Mar 31 2020 05:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.47023 * 2 1 4 4 H 1.08999 * 109.47245 * 54.43829 * 3 2 1 5 5 C 1.50692 * 109.47138 * 174.44708 * 3 2 1 6 6 H 1.08005 * 120.00344 * 119.99321 * 5 3 2 7 7 C 1.37879 * 120.00296 * 299.99506 * 5 3 2 8 8 N 1.31510 * 120.00404 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99405 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47583 * 90.00145 * 9 7 5 11 11 H 1.48510 * 109.46831 * 209.99850 * 9 7 5 12 12 H 1.48499 * 109.47562 * 329.99699 * 9 7 5 13 13 N 1.46896 * 109.46614 * 294.44367 * 3 2 1 14 14 C 1.46905 * 110.99888 * 153.00393 * 13 3 2 15 15 C 1.53119 * 109.52247 * 153.59622 * 14 13 3 16 16 C 1.53037 * 109.27808 * 177.56181 * 15 14 13 17 17 N 1.46848 * 109.52167 * 300.81819 * 16 15 14 18 18 C 1.46900 * 110.99851 * 185.83675 * 17 16 15 19 19 C 1.53004 * 109.47057 * 169.99819 * 18 17 16 20 20 C 1.53003 * 109.47234 * 180.02562 * 19 18 17 21 21 C 1.52997 * 109.47152 * 175.00192 * 20 19 18 22 22 C 1.53001 * 109.47063 * 295.00231 * 20 19 18 23 23 C 1.46848 * 111.19695 * 61.74421 * 17 16 15 24 24 C 1.53034 * 109.52100 * 298.25705 * 23 17 16 25 25 H 1.08996 * 109.47096 * 60.76805 * 1 2 3 26 26 H 1.09004 * 109.46841 * 180.76948 * 1 2 3 27 27 H 1.09004 * 109.47462 * 300.76563 * 1 2 3 28 28 H 1.08992 * 109.47285 * 239.99615 * 2 1 3 29 29 H 1.08996 * 109.47028 * 119.99270 * 2 1 3 30 30 H 0.97005 * 120.00005 * 179.97438 * 8 7 5 31 31 H 1.00903 * 111.00534 * 29.05185 * 13 3 2 32 32 H 1.08996 * 109.57129 * 33.43626 * 14 13 3 33 33 H 1.08999 * 109.50519 * 57.61963 * 15 14 13 34 34 H 1.09005 * 109.50525 * 297.50301 * 15 14 13 35 35 H 1.08999 * 109.46230 * 60.83590 * 16 15 14 36 36 H 1.09002 * 109.46467 * 180.81587 * 16 15 14 37 37 H 1.08999 * 109.47479 * 290.00321 * 18 17 16 38 38 H 1.08999 * 109.47085 * 50.00481 * 18 17 16 39 39 H 1.08999 * 109.47386 * 300.00559 * 19 18 17 40 40 H 1.08999 * 109.46633 * 60.00385 * 19 18 17 41 41 H 1.09002 * 109.46777 * 55.00119 * 20 19 18 42 42 H 1.09004 * 109.46676 * 59.99934 * 21 20 19 43 43 H 1.08996 * 109.47372 * 179.97438 * 21 20 19 44 44 H 1.08999 * 109.47302 * 300.00461 * 21 20 19 45 45 H 1.08995 * 109.47384 * 179.97438 * 22 20 19 46 46 H 1.09004 * 109.47288 * 300.00387 * 22 20 19 47 47 H 1.09000 * 109.46948 * 59.99822 * 22 20 19 48 48 H 1.08995 * 109.46387 * 58.27079 * 23 17 16 49 49 H 1.08998 * 109.46389 * 178.24042 * 23 17 16 50 50 H 1.09002 * 109.50478 * 179.12282 * 24 23 17 51 51 H 1.09010 * 109.50513 * 299.23568 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5976 1.9844 0.8360 5 6 3.5406 1.4448 0.1375 6 1 4.1531 1.8868 -0.6346 7 6 4.1320 0.8826 1.2489 8 7 5.4416 0.8841 1.3687 9 14 3.0728 0.1175 2.5839 10 1 2.8548 -1.3197 2.2800 11 1 3.7582 0.2477 3.8949 12 1 1.7636 0.8160 2.6383 13 7 1.6628 2.0952 -1.2609 14 6 1.5362 3.5481 -1.0843 15 6 1.7997 4.2505 -2.4191 16 6 1.6068 5.7585 -2.2432 17 7 0.2364 6.0283 -1.7897 18 6 -0.0278 7.4726 -1.7427 19 6 -1.5214 7.7106 -1.5112 20 6 -1.7967 9.2149 -1.4630 21 6 -3.3040 9.4543 -1.3565 22 6 -1.0965 9.8226 -0.2459 23 6 -0.0245 5.4030 -0.4869 24 6 0.1197 3.8845 -0.6104 25 1 -0.3633 0.5018 -0.8968 26 1 -0.3633 -1.0276 0.0138 27 1 -0.3634 0.5257 0.8831 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 5.8576 0.4889 2.1508 31 1 0.8115 1.7005 -1.6318 32 1 2.2590 3.8902 -0.3437 33 1 1.1017 3.8795 -3.1696 34 1 2.8216 4.0494 -2.7408 35 1 2.3145 6.1312 -1.5027 36 1 1.7794 6.2603 -3.1953 37 1 0.5420 7.9199 -0.9283 38 1 0.2704 7.9274 -2.6873 39 1 -2.0911 7.2632 -2.3257 40 1 -1.8195 7.2558 -0.5666 41 1 -1.4176 9.6829 -2.3715 42 1 -3.6829 8.9862 -0.4480 43 1 -3.5001 10.5259 -1.3216 44 1 -3.8028 9.0213 -2.2235 45 1 -1.2922 10.8943 -0.2117 46 1 -1.4754 9.3545 0.6627 47 1 -0.0226 9.6520 -0.3217 48 1 0.6908 5.7773 0.2454 49 1 -1.0365 5.6466 -0.1632 50 1 -0.0587 3.4218 0.3603 51 1 -0.6048 3.5076 -1.3324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893607060.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:19 Heat of formation + Delta-G solvation = -20.023240 kcal Electronic energy + Delta-G solvation = -23506.009839 eV Core-core repulsion = 20439.140546 eV Total energy + Delta-G solvation = -3066.869293 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.22786 -37.22470 -35.99371 -33.40053 -31.94120 -30.66309 -30.16865 -28.14181 -27.40578 -26.67660 -23.64236 -22.93181 -22.40558 -21.37712 -19.98359 -19.89711 -19.31527 -16.66719 -16.15480 -15.61601 -15.14587 -14.95992 -14.54174 -14.25187 -14.15078 -13.79329 -13.55884 -13.35195 -13.17520 -12.90477 -12.57140 -12.52502 -12.39803 -12.12131 -11.93349 -11.78467 -11.76135 -11.35576 -11.21631 -11.05882 -10.93870 -10.84880 -10.69545 -10.64807 -10.45940 -10.28752 -10.24220 -9.91746 -9.83364 -9.35577 -9.14440 -8.50061 -8.20040 -7.27694 -6.01627 -3.97868 3.26642 3.36849 3.38912 3.93291 4.42451 4.61325 4.70727 4.75748 4.94202 5.00909 5.14609 5.25653 5.29406 5.32306 5.38243 5.45263 5.49777 5.53338 5.56954 5.61993 5.65049 5.71261 5.75252 5.83207 5.84118 5.85923 5.92107 5.95890 5.97743 6.01872 6.06798 6.12365 6.19199 6.23014 6.30747 6.38209 6.49173 6.60242 6.68260 6.71332 6.78729 6.90922 7.20541 7.21924 7.27044 7.76542 8.05406 8.34232 8.81345 9.11550 9.62016 11.11965 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.023183 B = 0.003521 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.481015 B = 7950.556560 C = 8048.587531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.137 4.137 3 C 0.190 3.810 4 H 0.000 1.000 5 C -0.493 4.493 6 H 0.080 0.920 7 C 0.065 3.935 8 N -0.902 5.902 9 Si 0.881 3.119 10 H -0.279 1.279 11 H -0.298 1.298 12 H -0.268 1.268 13 N -0.670 5.670 14 C 0.094 3.906 15 C -0.100 4.100 16 C 0.057 3.943 17 N -0.538 5.538 18 C 0.054 3.946 19 C -0.111 4.111 20 C -0.097 4.097 21 C -0.146 4.146 22 C -0.150 4.150 23 C 0.060 3.940 24 C -0.144 4.144 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.262 0.738 31 H 0.319 0.681 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.032 0.968 36 H 0.070 0.930 37 H 0.033 0.967 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.053 0.947 47 H 0.056 0.944 48 H 0.031 0.969 49 H 0.070 0.930 50 H 0.062 0.938 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.388 14.033 -5.189 21.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.174 4.174 3 C 0.082 3.918 4 H 0.018 0.982 5 C -0.532 4.532 6 H 0.098 0.902 7 C -0.136 4.136 8 N -0.542 5.542 9 Si 0.712 3.288 10 H -0.206 1.206 11 H -0.226 1.226 12 H -0.194 1.194 13 N -0.299 5.299 14 C -0.017 4.017 15 C -0.139 4.139 16 C -0.071 4.071 17 N -0.263 5.263 18 C -0.074 4.074 19 C -0.149 4.149 20 C -0.116 4.116 21 C -0.204 4.204 22 C -0.207 4.207 23 C -0.069 4.069 24 C -0.184 4.184 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.138 0.862 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.049 0.951 49 H 0.088 0.912 50 H 0.080 0.920 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.880 13.776 -5.640 21.048 hybrid contribution -0.736 -0.139 2.002 2.137 sum -15.616 13.637 -3.638 21.050 Atomic orbital electron populations 1.21910 0.98196 1.00470 1.00749 1.22133 0.92956 1.00620 1.01733 1.19616 0.96676 0.89114 0.86417 0.98208 1.21071 0.89249 1.37132 1.05728 0.90172 1.24966 0.94735 0.96074 0.97778 1.69889 1.08862 1.46066 1.29342 0.86957 0.80729 0.79820 0.81273 1.20612 1.22583 1.19366 1.60578 1.37242 1.01665 1.30424 1.21524 0.94131 0.89501 0.96553 1.21537 1.02140 0.92201 0.97985 1.22115 0.87828 0.97696 0.99464 1.61968 1.25644 1.10637 1.28022 1.22152 0.96219 0.88367 1.00676 1.21667 0.95986 0.94870 1.02401 1.21100 0.95755 0.95931 0.98768 1.21827 0.95516 1.01211 1.01807 1.21909 1.00670 1.00279 0.97890 1.22048 1.00332 0.95102 0.89385 1.22366 0.99747 0.94817 1.01450 0.93082 0.93673 0.93696 0.91385 0.92923 0.92802 0.86246 0.90263 0.91803 0.90821 0.94968 0.91179 0.94868 0.91151 0.91206 0.91919 0.91297 0.92772 0.92900 0.92681 0.92971 0.92767 0.92475 0.95056 0.91198 0.91982 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.74 37.16 0.36 -2.31 16 2 C -0.14 -2.93 5.00 -26.73 -0.13 -3.06 16 3 C 0.19 4.43 1.42 -68.87 -0.10 4.33 16 4 H 0.00 0.01 6.33 -51.93 -0.33 -0.32 16 5 C -0.49 -13.93 9.19 -34.44 -0.32 -14.25 16 6 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 7 C 0.07 1.89 5.45 -17.82 -0.10 1.80 16 8 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 9 Si 0.88 22.06 24.41 -169.99 -4.15 17.91 16 10 H -0.28 -6.81 6.83 56.52 0.39 -6.42 16 11 H -0.30 -7.51 7.11 56.52 0.40 -7.10 16 12 H -0.27 -6.43 6.53 56.52 0.37 -6.07 16 13 N -0.67 -13.48 6.06 -100.83 -0.61 -14.10 16 14 C 0.09 1.69 2.33 -67.59 -0.16 1.53 16 15 C -0.10 -1.58 5.70 -26.65 -0.15 -1.73 16 16 C 0.06 0.78 5.46 -3.83 -0.02 0.76 16 17 N -0.54 -6.94 4.66 -234.67 -1.09 -8.03 16 18 C 0.05 0.58 4.71 -3.82 -0.02 0.56 16 19 C -0.11 -1.05 4.61 -26.73 -0.12 -1.17 16 20 C -0.10 -0.77 2.92 -90.62 -0.26 -1.03 16 21 C -0.15 -1.06 9.19 37.16 0.34 -0.71 16 22 C -0.15 -1.19 8.95 37.16 0.33 -0.86 16 23 C 0.06 0.81 5.29 -3.83 -0.02 0.79 16 24 C -0.14 -2.22 5.34 -26.65 -0.14 -2.36 16 25 H 0.05 0.78 6.49 -51.93 -0.34 0.45 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.05 1.22 3.21 -51.93 -0.17 1.05 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.32 5.77 6.20 -39.29 -0.24 5.53 16 32 H 0.08 1.67 7.70 -51.93 -0.40 1.27 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.85 8.02 -51.93 -0.42 0.44 16 37 H 0.03 0.37 6.55 -51.93 -0.34 0.03 16 38 H 0.07 0.71 7.99 -51.93 -0.41 0.30 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.47 6.57 -51.93 -0.34 0.13 16 48 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.07 0.86 6.21 -51.93 -0.32 0.54 16 50 H 0.06 1.01 7.62 -51.93 -0.40 0.61 16 51 H 0.07 0.98 8.09 -51.92 -0.42 0.55 16 LS Contribution 372.60 15.07 5.62 5.62 Total: -1.00 -29.53 372.60 -9.96 -39.49 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -9.98 Total: 3.94 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -0.51 Total: -17.72 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: -0.93 Total: -49.23 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.15 Total: 17.91 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.53 -9.96 -39.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893607060.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.466 kcal (2) G-P(sol) polarization free energy of solvation -29.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds