Wall clock time and date at job start Tue Mar 31 2020 05:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.47023 * 2 1 4 4 H 1.08999 * 109.47245 * 54.43829 * 3 2 1 5 5 C 1.50692 * 109.47138 * 174.44708 * 3 2 1 6 6 H 1.08005 * 120.00344 * 119.99321 * 5 3 2 7 7 C 1.37879 * 120.00296 * 299.99506 * 5 3 2 8 8 N 1.31510 * 120.00404 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99405 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47583 * 90.00145 * 9 7 5 11 11 H 1.48510 * 109.46831 * 209.99850 * 9 7 5 12 12 H 1.48499 * 109.47562 * 329.99699 * 9 7 5 13 13 N 1.46896 * 109.46614 * 294.44367 * 3 2 1 14 14 C 1.46905 * 110.99888 * 153.00393 * 13 3 2 15 15 C 1.53119 * 109.52247 * 153.59622 * 14 13 3 16 16 C 1.53037 * 109.27808 * 177.56181 * 15 14 13 17 17 N 1.46848 * 109.52167 * 300.81819 * 16 15 14 18 18 C 1.46900 * 110.99851 * 185.83675 * 17 16 15 19 19 C 1.53004 * 109.47057 * 169.99819 * 18 17 16 20 20 C 1.53003 * 109.47234 * 180.02562 * 19 18 17 21 21 C 1.52997 * 109.47152 * 175.00192 * 20 19 18 22 22 C 1.53001 * 109.47063 * 295.00231 * 20 19 18 23 23 C 1.46848 * 111.19695 * 61.74421 * 17 16 15 24 24 C 1.53034 * 109.52100 * 298.25705 * 23 17 16 25 25 H 1.08996 * 109.47096 * 60.76805 * 1 2 3 26 26 H 1.09004 * 109.46841 * 180.76948 * 1 2 3 27 27 H 1.09004 * 109.47462 * 300.76563 * 1 2 3 28 28 H 1.08992 * 109.47285 * 239.99615 * 2 1 3 29 29 H 1.08996 * 109.47028 * 119.99270 * 2 1 3 30 30 H 0.97005 * 120.00005 * 179.97438 * 8 7 5 31 31 H 1.00903 * 111.00534 * 29.05185 * 13 3 2 32 32 H 1.08996 * 109.57129 * 33.43626 * 14 13 3 33 33 H 1.08999 * 109.50519 * 57.61963 * 15 14 13 34 34 H 1.09005 * 109.50525 * 297.50301 * 15 14 13 35 35 H 1.08999 * 109.46230 * 60.83590 * 16 15 14 36 36 H 1.09002 * 109.46467 * 180.81587 * 16 15 14 37 37 H 1.08999 * 109.47479 * 290.00321 * 18 17 16 38 38 H 1.08999 * 109.47085 * 50.00481 * 18 17 16 39 39 H 1.08999 * 109.47386 * 300.00559 * 19 18 17 40 40 H 1.08999 * 109.46633 * 60.00385 * 19 18 17 41 41 H 1.09002 * 109.46777 * 55.00119 * 20 19 18 42 42 H 1.09004 * 109.46676 * 59.99934 * 21 20 19 43 43 H 1.08996 * 109.47372 * 179.97438 * 21 20 19 44 44 H 1.08999 * 109.47302 * 300.00461 * 21 20 19 45 45 H 1.08995 * 109.47384 * 179.97438 * 22 20 19 46 46 H 1.09004 * 109.47288 * 300.00387 * 22 20 19 47 47 H 1.09000 * 109.46948 * 59.99822 * 22 20 19 48 48 H 1.08995 * 109.46387 * 58.27079 * 23 17 16 49 49 H 1.08998 * 109.46389 * 178.24042 * 23 17 16 50 50 H 1.09002 * 109.50478 * 179.12282 * 24 23 17 51 51 H 1.09010 * 109.50513 * 299.23568 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5976 1.9844 0.8360 5 6 3.5406 1.4448 0.1375 6 1 4.1531 1.8868 -0.6346 7 6 4.1320 0.8826 1.2489 8 7 5.4416 0.8841 1.3687 9 14 3.0728 0.1175 2.5839 10 1 2.8548 -1.3197 2.2800 11 1 3.7582 0.2477 3.8949 12 1 1.7636 0.8160 2.6383 13 7 1.6628 2.0952 -1.2609 14 6 1.5362 3.5481 -1.0843 15 6 1.7997 4.2505 -2.4191 16 6 1.6068 5.7585 -2.2432 17 7 0.2364 6.0283 -1.7897 18 6 -0.0278 7.4726 -1.7427 19 6 -1.5214 7.7106 -1.5112 20 6 -1.7967 9.2149 -1.4630 21 6 -3.3040 9.4543 -1.3565 22 6 -1.0965 9.8226 -0.2459 23 6 -0.0245 5.4030 -0.4869 24 6 0.1197 3.8845 -0.6104 25 1 -0.3633 0.5018 -0.8968 26 1 -0.3633 -1.0276 0.0138 27 1 -0.3634 0.5257 0.8831 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 5.8576 0.4889 2.1508 31 1 0.8115 1.7005 -1.6318 32 1 2.2590 3.8902 -0.3437 33 1 1.1017 3.8795 -3.1696 34 1 2.8216 4.0494 -2.7408 35 1 2.3145 6.1312 -1.5027 36 1 1.7794 6.2603 -3.1953 37 1 0.5420 7.9199 -0.9283 38 1 0.2704 7.9274 -2.6873 39 1 -2.0911 7.2632 -2.3257 40 1 -1.8195 7.2558 -0.5666 41 1 -1.4176 9.6829 -2.3715 42 1 -3.6829 8.9862 -0.4480 43 1 -3.5001 10.5259 -1.3216 44 1 -3.8028 9.0213 -2.2235 45 1 -1.2922 10.8943 -0.2117 46 1 -1.4754 9.3545 0.6627 47 1 -0.0226 9.6520 -0.3217 48 1 0.6908 5.7773 0.2454 49 1 -1.0365 5.6466 -0.1632 50 1 -0.0587 3.4218 0.3603 51 1 -0.6048 3.5076 -1.3324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893607060.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:18 Heat of formation + Delta-G solvation = -39.288833 kcal Electronic energy + Delta-G solvation = -23506.845258 eV Core-core repulsion = 20439.140546 eV Total energy + Delta-G solvation = -3067.704712 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.42547 -38.46689 -37.13397 -34.87968 -33.93460 -31.86188 -31.43139 -29.45972 -28.32379 -27.99488 -24.92560 -24.26050 -23.85283 -22.45279 -21.71342 -20.69171 -20.65320 -18.79842 -17.36848 -16.89420 -16.42160 -16.03045 -15.97540 -15.83318 -15.17408 -14.97761 -14.83376 -14.52673 -14.47792 -14.23918 -14.02931 -13.66876 -13.59256 -13.37374 -13.07447 -13.03791 -12.81518 -12.56128 -12.49670 -12.27778 -12.18954 -12.16125 -12.08415 -11.77754 -11.62801 -11.53284 -11.42713 -11.38525 -11.30654 -11.11064 -11.04472 -10.66374 -9.26915 -8.94171 -8.27759 -6.28824 1.26914 1.31894 1.42124 2.30461 2.91702 3.05183 3.45913 3.84440 3.86473 4.02806 4.05834 4.13669 4.22797 4.25141 4.30462 4.34872 4.38216 4.43317 4.49275 4.61729 4.66019 4.69498 4.75036 4.76367 4.79836 4.83318 4.86201 4.90524 4.99701 5.02751 5.05455 5.07962 5.10986 5.11814 5.18062 5.20644 5.22430 5.33932 5.36931 5.42610 5.49513 5.50635 5.54601 5.73223 6.11459 6.13728 6.19774 6.56204 6.78089 7.01613 7.35801 8.89917 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.023183 B = 0.003521 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.481015 B = 7950.556560 C = 8048.587531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C 0.199 3.801 4 H -0.007 1.007 5 C -0.498 4.498 6 H 0.029 0.971 7 C 0.006 3.994 8 N -0.953 5.953 9 Si 0.948 3.052 10 H -0.264 1.264 11 H -0.300 1.300 12 H -0.249 1.249 13 N -0.678 5.678 14 C 0.094 3.906 15 C -0.093 4.093 16 C 0.062 3.938 17 N -0.537 5.537 18 C 0.054 3.946 19 C -0.104 4.104 20 C -0.093 4.093 21 C -0.145 4.145 22 C -0.150 4.150 23 C 0.064 3.936 24 C -0.133 4.133 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.038 0.962 30 H 0.264 0.736 31 H 0.336 0.664 32 H 0.037 0.963 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.018 0.982 36 H 0.091 0.909 37 H 0.030 0.970 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.051 0.949 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.049 0.951 47 H 0.050 0.950 48 H 0.017 0.983 49 H 0.090 0.910 50 H 0.054 0.946 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.858 14.412 -5.425 24.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.175 4.175 3 C 0.090 3.910 4 H 0.010 0.990 5 C -0.537 4.537 6 H 0.048 0.952 7 C -0.190 4.190 8 N -0.595 5.595 9 Si 0.776 3.224 10 H -0.190 1.190 11 H -0.228 1.228 12 H -0.173 1.173 13 N -0.310 5.310 14 C -0.017 4.017 15 C -0.131 4.131 16 C -0.066 4.066 17 N -0.262 5.262 18 C -0.074 4.074 19 C -0.142 4.142 20 C -0.112 4.112 21 C -0.202 4.202 22 C -0.207 4.207 23 C -0.065 4.065 24 C -0.173 4.173 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.156 0.844 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.036 0.964 36 H 0.109 0.891 37 H 0.048 0.952 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.035 0.965 49 H 0.108 0.892 50 H 0.073 0.927 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.385 14.170 -5.902 23.950 hybrid contribution 0.433 -0.173 1.971 2.025 sum -17.951 13.996 -3.931 23.100 Atomic orbital electron populations 1.21833 0.94249 1.02492 1.01889 1.22024 0.96457 0.98255 1.00761 1.19345 0.93211 0.90944 0.87506 0.98962 1.21355 0.91944 1.36021 1.04351 0.95221 1.25830 0.95931 0.96804 1.00475 1.70057 1.11073 1.47855 1.30473 0.85860 0.79449 0.79634 0.77501 1.19037 1.22830 1.17293 1.60422 1.38545 1.02902 1.29096 1.21492 0.95031 0.88309 0.96839 1.21436 1.01204 0.93691 0.96787 1.22044 0.88278 0.96076 1.00202 1.61999 1.24619 1.12179 1.27369 1.22234 0.97246 0.86758 1.01122 1.21607 0.94708 0.95891 1.02018 1.21078 0.96388 0.94857 0.98926 1.21811 0.94785 1.01775 1.01846 1.21906 1.00201 1.00865 0.97760 1.22006 1.01084 0.93844 0.89556 1.22221 0.97669 0.96184 1.01210 0.91210 0.91228 0.93337 0.91947 0.94392 0.92737 0.84428 0.94464 0.90664 0.92856 0.96366 0.89094 0.95213 0.90160 0.91286 0.92395 0.90824 0.92963 0.92139 0.92398 0.92106 0.93140 0.93138 0.96506 0.89169 0.92728 0.90114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.51 9.74 71.98 0.70 -3.81 16 2 C -0.14 -5.65 5.00 30.60 0.15 -5.50 16 3 C 0.20 9.30 1.42 44.17 0.06 9.36 16 4 H -0.01 -0.34 6.33 -2.39 -0.02 -0.36 16 5 C -0.50 -29.34 9.19 25.60 0.24 -29.10 16 6 H 0.03 1.99 8.06 -2.91 -0.02 1.96 16 7 C 0.01 0.34 5.45 84.66 0.46 0.80 16 8 N -0.95 -61.36 13.96 21.45 0.30 -61.06 16 9 Si 0.95 45.88 24.41 68.60 1.67 47.56 16 10 H -0.26 -12.10 6.83 99.48 0.68 -11.42 16 11 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 12 H -0.25 -11.14 6.53 99.48 0.65 -10.49 16 13 N -0.68 -27.32 6.06 -472.91 -2.87 -30.18 16 14 C 0.09 3.41 2.33 44.99 0.10 3.51 16 15 C -0.09 -2.91 5.70 30.65 0.17 -2.74 16 16 C 0.06 1.66 5.46 86.33 0.47 2.13 16 17 N -0.54 -12.90 4.66 -896.37 -4.17 -17.08 16 18 C 0.05 1.04 4.71 86.30 0.41 1.45 16 19 C -0.10 -1.72 4.61 30.60 0.14 -1.58 16 20 C -0.09 -1.28 2.92 -10.79 -0.03 -1.31 16 21 C -0.14 -1.75 9.19 71.98 0.66 -1.09 16 22 C -0.15 -2.12 8.95 71.98 0.64 -1.47 16 23 C 0.06 1.64 5.29 86.32 0.46 2.10 16 24 C -0.13 -3.91 5.34 30.64 0.16 -3.75 16 25 H 0.07 1.86 6.49 -2.39 -0.02 1.85 16 26 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.04 1.67 3.21 -2.39 -0.01 1.67 16 30 H 0.26 15.90 8.31 -92.70 -0.77 15.13 16 31 H 0.34 11.54 6.20 -89.69 -0.56 10.98 16 32 H 0.04 1.65 7.70 -2.39 -0.02 1.64 16 33 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.09 2.05 8.02 -2.39 -0.02 2.04 16 37 H 0.03 0.61 6.55 -2.39 -0.02 0.60 16 38 H 0.08 1.42 7.99 -2.39 -0.02 1.40 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 1.01 6.43 -2.39 -0.02 1.00 16 41 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.05 0.77 6.57 -2.39 -0.02 0.76 16 48 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.09 2.00 6.21 -2.39 -0.01 1.98 16 50 H 0.05 1.69 7.62 -2.39 -0.02 1.67 16 51 H 0.08 2.15 8.09 -2.38 -0.02 2.13 16 Total: -1.00 -66.73 372.60 -0.04 -66.77 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.22 Total: 24.98 kcal Atomic # 6 Polarization: -35.79 SS G_CDS: 4.81 Total: -30.99 kcal Atomic # 7 Polarization: -101.58 SS G_CDS: -6.74 Total: -108.32 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.67 Total: 47.56 kcal Total: -66.73 -0.04 -66.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893607060.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.482 kcal (2) G-P(sol) polarization free energy of solvation -66.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds