Wall clock time and date at job start Tue Mar 31 2020 05:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46863 * 2 1 4 4 H 1.09000 * 109.47113 * 175.27001 * 3 2 1 5 5 C 1.50695 * 109.47230 * 55.26968 * 3 2 1 6 6 H 1.08003 * 120.00058 * 240.00264 * 5 3 2 7 7 C 1.37876 * 120.00051 * 59.99671 * 5 3 2 8 8 N 1.31512 * 119.99966 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99843 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46857 * 60.00396 * 9 7 5 11 11 H 1.48508 * 109.47032 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47224 * 300.00147 * 9 7 5 13 13 N 1.46903 * 109.46736 * 295.26695 * 3 2 1 14 14 C 1.46901 * 110.99912 * 274.86289 * 13 3 2 15 15 C 1.53112 * 109.52240 * 274.30581 * 14 13 3 16 16 C 1.53051 * 109.27247 * 182.50451 * 15 14 13 17 17 N 1.46846 * 109.57306 * 59.08591 * 16 15 14 18 18 C 1.46901 * 111.00089 * 174.19290 * 17 16 15 19 19 C 1.53005 * 109.47151 * 294.20935 * 18 17 16 20 20 C 1.52993 * 109.47263 * 180.02562 * 19 18 17 21 21 C 1.52995 * 109.47503 * 64.99746 * 20 19 18 22 22 C 1.53002 * 109.47250 * 185.00325 * 20 19 18 23 23 C 1.46848 * 111.19736 * 298.29020 * 17 16 15 24 24 C 1.53037 * 109.52541 * 61.74631 * 23 17 16 25 25 H 1.08998 * 109.47574 * 298.46631 * 1 2 3 26 26 H 1.09003 * 109.47049 * 58.46271 * 1 2 3 27 27 H 1.08997 * 109.47108 * 178.46430 * 1 2 3 28 28 H 1.08998 * 109.47404 * 239.99864 * 2 1 3 29 29 H 1.08997 * 109.46993 * 119.99840 * 2 1 3 30 30 H 0.97009 * 119.99869 * 180.02562 * 8 7 5 31 31 H 1.00898 * 111.00133 * 38.82275 * 13 3 2 32 32 H 1.08996 * 109.52055 * 34.43746 * 14 13 3 33 33 H 1.09000 * 109.50754 * 302.38081 * 15 14 13 34 34 H 1.08996 * 109.50761 * 62.50723 * 15 14 13 35 35 H 1.08992 * 109.41162 * 299.06696 * 16 15 14 36 36 H 1.09002 * 109.45379 * 179.12386 * 16 15 14 37 37 H 1.08995 * 109.47052 * 54.20632 * 18 17 16 38 38 H 1.08996 * 109.47293 * 174.20937 * 18 17 16 39 39 H 1.09002 * 109.46963 * 300.00162 * 19 18 17 40 40 H 1.08999 * 109.47159 * 59.99335 * 19 18 17 41 41 H 1.09005 * 109.47063 * 304.99608 * 20 19 18 42 42 H 1.09004 * 109.47456 * 300.00157 * 21 20 19 43 43 H 1.09005 * 109.47074 * 59.99868 * 21 20 19 44 44 H 1.08999 * 109.47428 * 180.02562 * 21 20 19 45 45 H 1.08996 * 109.47127 * 59.99277 * 22 20 19 46 46 H 1.08992 * 109.47413 * 179.97438 * 22 20 19 47 47 H 1.09005 * 109.46502 * 299.99626 * 22 20 19 48 48 H 1.09003 * 109.46337 * 301.72259 * 23 17 16 49 49 H 1.09005 * 109.44999 * 181.75436 * 23 17 16 50 50 H 1.09002 * 109.50074 * 180.88456 * 24 23 17 51 51 H 1.08994 * 109.50231 * 60.76004 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1266 1.4438 0.0847 5 6 1.4442 2.1860 1.1676 6 1 0.8338 3.0604 0.9965 7 6 1.6784 1.7499 2.4545 8 7 2.4221 0.6855 2.6629 9 14 0.9405 2.6719 3.9019 10 1 -0.5400 2.6708 3.7866 11 1 1.3394 2.0063 5.1681 12 1 1.4360 4.0717 3.9017 13 7 1.6457 2.1012 -1.2525 14 6 2.6175 1.8275 -2.3197 15 6 3.7615 2.8423 -2.2426 16 6 4.7379 2.5912 -3.3941 17 7 4.0311 2.7179 -4.6750 18 6 4.9656 2.6192 -5.8040 19 6 5.9157 3.8184 -5.7861 20 6 6.8886 3.7160 -6.9623 21 6 6.1142 3.8329 -8.2766 22 6 7.9166 4.8458 -6.8738 23 6 2.9589 1.7212 -4.7907 24 6 1.9285 1.9474 -3.6819 25 1 -0.3634 0.4898 0.9034 26 1 -0.3633 0.5375 -0.8759 27 1 -0.3633 -1.0273 -0.0275 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.5865 0.3784 3.5684 31 1 0.7162 1.8238 -1.5300 32 1 3.0155 0.8199 -2.2002 33 1 3.3584 3.8519 -2.3221 34 1 4.2826 2.7316 -1.2917 35 1 5.1519 1.5868 -3.3055 36 1 5.5455 3.3220 -3.3511 37 1 5.5419 1.6980 -5.7192 38 1 4.4061 2.6130 -6.7394 39 1 5.3394 4.7398 -5.8708 40 1 6.4752 3.8247 -4.8506 41 1 7.4014 2.7548 -6.9270 42 1 5.3819 3.0279 -8.3397 43 1 5.6014 4.7941 -8.3119 44 1 6.8073 3.7594 -9.1146 45 1 8.4683 4.7625 -5.9375 46 1 8.6100 4.7726 -7.7115 47 1 7.4038 5.8071 -6.9091 48 1 3.3811 0.7208 -4.6956 49 1 2.4746 1.8202 -5.7622 50 1 1.1410 1.1976 -3.7586 51 1 1.4958 2.9424 -3.7847 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893607061.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:21 Heat of formation + Delta-G solvation = -26.947425 kcal Electronic energy + Delta-G solvation = -23324.334946 eV Core-core repulsion = 20257.165398 eV Total energy + Delta-G solvation = -3067.169549 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.17233 -37.13158 -35.89077 -33.38054 -31.47021 -30.63891 -29.77543 -27.91524 -27.37839 -25.95576 -23.63605 -23.37342 -22.55632 -21.42360 -20.03821 -19.46779 -18.92775 -16.26030 -15.77731 -15.61030 -14.91014 -14.73627 -14.61925 -14.53556 -14.01612 -13.72083 -13.45576 -13.05591 -12.98756 -12.81089 -12.51974 -12.39237 -12.30940 -11.98722 -11.75579 -11.74553 -11.50070 -10.98117 -10.89926 -10.87148 -10.81284 -10.77112 -10.72954 -10.57565 -10.50247 -10.27363 -9.97777 -9.80375 -9.62478 -9.43992 -8.89829 -8.29561 -8.19798 -7.13491 -5.93137 -3.94343 3.36931 3.41008 3.44629 3.93756 4.47764 4.66129 4.68254 4.78358 5.03604 5.11391 5.15567 5.26633 5.32148 5.38467 5.40359 5.48267 5.51030 5.52303 5.61882 5.65235 5.71223 5.72427 5.86053 5.86809 5.87022 5.99543 6.02712 6.07012 6.16508 6.22176 6.29088 6.35840 6.37493 6.40536 6.47054 6.59852 6.67647 6.90738 6.93897 7.24229 7.25644 7.33685 7.36336 7.53667 7.75537 7.95282 8.35749 8.63820 8.70911 9.11688 9.69335 11.13894 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.027872 B = 0.003180 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.339713 B = 8802.984223 C = 9382.512895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 C 0.217 3.783 4 H 0.032 0.968 5 C -0.487 4.487 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.893 3.107 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.680 5.680 14 C 0.089 3.911 15 C -0.100 4.100 16 C 0.055 3.945 17 N -0.536 5.536 18 C 0.055 3.945 19 C -0.112 4.112 20 C -0.097 4.097 21 C -0.148 4.148 22 C -0.147 4.147 23 C 0.062 3.938 24 C -0.117 4.117 25 H 0.065 0.935 26 H 0.030 0.970 27 H 0.021 0.979 28 H 0.008 0.992 29 H 0.092 0.908 30 H 0.259 0.741 31 H 0.326 0.674 32 H 0.029 0.971 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.027 0.973 36 H 0.073 0.927 37 H 0.028 0.972 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.050 0.950 45 H 0.054 0.946 46 H 0.052 0.948 47 H 0.055 0.945 48 H 0.028 0.972 49 H 0.069 0.931 50 H 0.059 0.941 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.420 2.893 -18.658 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.185 4.185 3 C 0.109 3.891 4 H 0.050 0.950 5 C -0.525 4.525 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.311 5.311 14 C -0.022 4.022 15 C -0.139 4.139 16 C -0.073 4.073 17 N -0.261 5.261 18 C -0.073 4.073 19 C -0.150 4.150 20 C -0.116 4.116 21 C -0.205 4.205 22 C -0.204 4.204 23 C -0.066 4.066 24 C -0.155 4.155 25 H 0.084 0.916 26 H 0.048 0.952 27 H 0.040 0.960 28 H 0.027 0.973 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.145 0.855 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.092 0.908 37 H 0.046 0.954 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.046 0.954 49 H 0.087 0.913 50 H 0.078 0.922 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.547 3.852 -18.329 19.841 hybrid contribution -0.167 -1.457 0.705 1.627 sum 6.380 2.395 -17.624 18.896 Atomic orbital electron populations 1.21563 0.97748 0.97929 1.01240 1.22111 0.94933 1.01392 1.00079 1.19199 0.95772 0.88336 0.85783 0.95020 1.21052 1.30415 1.11390 0.89692 0.92136 1.24911 0.95600 0.95181 0.98713 1.69876 1.39011 1.24003 1.20889 0.86649 0.79501 0.80016 0.81739 1.20427 1.21588 1.20353 1.60854 1.03660 1.63158 1.03464 1.21422 0.93988 0.96178 0.90587 1.21552 0.95482 1.00567 0.96291 1.22191 0.96615 0.99331 0.89148 1.61950 1.12090 1.49979 1.02100 1.22148 0.94017 0.96883 0.94264 1.21672 0.96616 0.98926 0.97786 1.21102 0.96171 0.99109 0.95214 1.21888 1.00020 1.01992 0.96631 1.21827 0.98558 0.98514 1.01490 1.22020 0.92820 0.92701 0.99109 1.21774 0.97065 1.02545 0.94119 0.91573 0.95152 0.95972 0.97300 0.88997 0.93155 0.85534 0.95316 0.90830 0.91363 0.95518 0.90843 0.95420 0.90945 0.91029 0.91788 0.91542 0.92563 0.92579 0.93084 0.92714 0.92933 0.92615 0.95399 0.91268 0.92215 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.40 37.16 0.35 -2.39 16 2 C -0.15 -3.44 5.49 -26.73 -0.15 -3.59 16 3 C 0.22 5.36 2.14 -68.86 -0.15 5.21 16 4 H 0.03 0.87 7.19 -51.93 -0.37 0.50 16 5 C -0.49 -13.21 7.39 -34.44 -0.25 -13.46 16 6 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 7 C 0.06 1.54 5.28 -17.82 -0.09 1.45 16 8 N -0.90 -25.48 11.37 55.43 0.63 -24.85 16 9 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.68 -14.38 6.04 -100.82 -0.61 -14.99 16 14 C 0.09 1.61 2.35 -67.59 -0.16 1.45 16 15 C -0.10 -1.74 5.58 -26.65 -0.15 -1.89 16 16 C 0.06 0.79 5.29 -3.83 -0.02 0.77 16 17 N -0.54 -7.08 4.66 -234.66 -1.09 -8.17 16 18 C 0.05 0.59 4.72 -3.82 -0.02 0.57 16 19 C -0.11 -1.10 4.61 -26.73 -0.12 -1.22 16 20 C -0.10 -0.79 2.92 -90.62 -0.26 -1.06 16 21 C -0.15 -1.11 8.95 37.16 0.33 -0.77 16 22 C -0.15 -1.10 9.19 37.16 0.34 -0.76 16 23 C 0.06 0.81 5.46 -3.83 -0.02 0.79 16 24 C -0.12 -1.75 5.36 -26.65 -0.14 -1.89 16 25 H 0.07 1.56 7.12 -51.93 -0.37 1.19 16 26 H 0.03 0.59 6.36 -51.93 -0.33 0.26 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.01 0.19 7.40 -51.93 -0.38 -0.20 16 29 H 0.09 2.44 6.21 -51.93 -0.32 2.12 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.33 6.62 6.14 -39.29 -0.24 6.38 16 32 H 0.03 0.57 7.11 -51.93 -0.37 0.20 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.07 1.31 7.52 -51.93 -0.39 0.92 16 35 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.97 6.21 -51.93 -0.32 0.65 16 37 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 38 H 0.07 0.72 6.41 -51.93 -0.33 0.39 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.07 0.79 8.02 -51.93 -0.42 0.38 16 50 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 51 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 375.85 15.07 5.66 5.66 Total: -1.00 -27.41 375.85 -10.94 -38.35 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -9.99 Total: 4.32 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -0.52 Total: -16.78 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -1.07 Total: -48.02 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -27.41 -10.94 -38.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893607061.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.398 kcal (2) G-P(sol) polarization free energy of solvation -27.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds