Wall clock time and date at job start Tue Mar 31 2020 05:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46863 * 2 1 4 4 H 1.09000 * 109.47113 * 175.27001 * 3 2 1 5 5 C 1.50695 * 109.47230 * 55.26968 * 3 2 1 6 6 H 1.08003 * 120.00058 * 240.00264 * 5 3 2 7 7 C 1.37876 * 120.00051 * 59.99671 * 5 3 2 8 8 N 1.31512 * 119.99966 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99843 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46857 * 60.00396 * 9 7 5 11 11 H 1.48508 * 109.47032 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47224 * 300.00147 * 9 7 5 13 13 N 1.46903 * 109.46736 * 295.26695 * 3 2 1 14 14 C 1.46901 * 110.99912 * 274.86289 * 13 3 2 15 15 C 1.53112 * 109.52240 * 274.30581 * 14 13 3 16 16 C 1.53051 * 109.27247 * 182.50451 * 15 14 13 17 17 N 1.46846 * 109.57306 * 59.08591 * 16 15 14 18 18 C 1.46901 * 111.00089 * 174.19290 * 17 16 15 19 19 C 1.53005 * 109.47151 * 294.20935 * 18 17 16 20 20 C 1.52993 * 109.47263 * 180.02562 * 19 18 17 21 21 C 1.52995 * 109.47503 * 64.99746 * 20 19 18 22 22 C 1.53002 * 109.47250 * 185.00325 * 20 19 18 23 23 C 1.46848 * 111.19736 * 298.29020 * 17 16 15 24 24 C 1.53037 * 109.52541 * 61.74631 * 23 17 16 25 25 H 1.08998 * 109.47574 * 298.46631 * 1 2 3 26 26 H 1.09003 * 109.47049 * 58.46271 * 1 2 3 27 27 H 1.08997 * 109.47108 * 178.46430 * 1 2 3 28 28 H 1.08998 * 109.47404 * 239.99864 * 2 1 3 29 29 H 1.08997 * 109.46993 * 119.99840 * 2 1 3 30 30 H 0.97009 * 119.99869 * 180.02562 * 8 7 5 31 31 H 1.00898 * 111.00133 * 38.82275 * 13 3 2 32 32 H 1.08996 * 109.52055 * 34.43746 * 14 13 3 33 33 H 1.09000 * 109.50754 * 302.38081 * 15 14 13 34 34 H 1.08996 * 109.50761 * 62.50723 * 15 14 13 35 35 H 1.08992 * 109.41162 * 299.06696 * 16 15 14 36 36 H 1.09002 * 109.45379 * 179.12386 * 16 15 14 37 37 H 1.08995 * 109.47052 * 54.20632 * 18 17 16 38 38 H 1.08996 * 109.47293 * 174.20937 * 18 17 16 39 39 H 1.09002 * 109.46963 * 300.00162 * 19 18 17 40 40 H 1.08999 * 109.47159 * 59.99335 * 19 18 17 41 41 H 1.09005 * 109.47063 * 304.99608 * 20 19 18 42 42 H 1.09004 * 109.47456 * 300.00157 * 21 20 19 43 43 H 1.09005 * 109.47074 * 59.99868 * 21 20 19 44 44 H 1.08999 * 109.47428 * 180.02562 * 21 20 19 45 45 H 1.08996 * 109.47127 * 59.99277 * 22 20 19 46 46 H 1.08992 * 109.47413 * 179.97438 * 22 20 19 47 47 H 1.09005 * 109.46502 * 299.99626 * 22 20 19 48 48 H 1.09003 * 109.46337 * 301.72259 * 23 17 16 49 49 H 1.09005 * 109.44999 * 181.75436 * 23 17 16 50 50 H 1.09002 * 109.50074 * 180.88456 * 24 23 17 51 51 H 1.08994 * 109.50231 * 60.76004 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1266 1.4438 0.0847 5 6 1.4442 2.1860 1.1676 6 1 0.8338 3.0604 0.9965 7 6 1.6784 1.7499 2.4545 8 7 2.4221 0.6855 2.6629 9 14 0.9405 2.6719 3.9019 10 1 -0.5400 2.6708 3.7866 11 1 1.3394 2.0063 5.1681 12 1 1.4360 4.0717 3.9017 13 7 1.6457 2.1012 -1.2525 14 6 2.6175 1.8275 -2.3197 15 6 3.7615 2.8423 -2.2426 16 6 4.7379 2.5912 -3.3941 17 7 4.0311 2.7179 -4.6750 18 6 4.9656 2.6192 -5.8040 19 6 5.9157 3.8184 -5.7861 20 6 6.8886 3.7160 -6.9623 21 6 6.1142 3.8329 -8.2766 22 6 7.9166 4.8458 -6.8738 23 6 2.9589 1.7212 -4.7907 24 6 1.9285 1.9474 -3.6819 25 1 -0.3634 0.4898 0.9034 26 1 -0.3633 0.5375 -0.8759 27 1 -0.3633 -1.0273 -0.0275 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.5865 0.3784 3.5684 31 1 0.7162 1.8238 -1.5300 32 1 3.0155 0.8199 -2.2002 33 1 3.3584 3.8519 -2.3221 34 1 4.2826 2.7316 -1.2917 35 1 5.1519 1.5868 -3.3055 36 1 5.5455 3.3220 -3.3511 37 1 5.5419 1.6980 -5.7192 38 1 4.4061 2.6130 -6.7394 39 1 5.3394 4.7398 -5.8708 40 1 6.4752 3.8247 -4.8506 41 1 7.4014 2.7548 -6.9270 42 1 5.3819 3.0279 -8.3397 43 1 5.6014 4.7941 -8.3119 44 1 6.8073 3.7594 -9.1146 45 1 8.4683 4.7625 -5.9375 46 1 8.6100 4.7726 -7.7115 47 1 7.4038 5.8071 -6.9091 48 1 3.3811 0.7208 -4.6956 49 1 2.4746 1.8202 -5.7622 50 1 1.1410 1.1976 -3.7586 51 1 1.4958 2.9424 -3.7847 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893607061.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:20 Heat of formation + Delta-G solvation = -42.337712 kcal Electronic energy + Delta-G solvation = -23325.002319 eV Core-core repulsion = 20257.165398 eV Total energy + Delta-G solvation = -3067.836922 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.37711 -38.40131 -37.11616 -34.92835 -33.29607 -31.86227 -31.20401 -29.16917 -27.98413 -27.76582 -25.30862 -24.72128 -23.83862 -22.52608 -21.12081 -20.73932 -20.49753 -18.13983 -17.09506 -16.77939 -16.49980 -16.25648 -15.61482 -15.56299 -15.40928 -14.93944 -14.71048 -14.46239 -14.30322 -14.16812 -13.97165 -13.65457 -13.41966 -13.07963 -12.97385 -12.82098 -12.68707 -12.62900 -12.46495 -12.35124 -12.11831 -12.08423 -12.02176 -11.73124 -11.58312 -11.48349 -11.45547 -11.43604 -11.19373 -11.00803 -10.87805 -10.41531 -9.25380 -8.89665 -8.04420 -6.12794 1.43696 1.44815 1.52163 2.46232 2.92665 3.24235 3.58263 3.81783 3.92639 4.01511 4.05061 4.15510 4.27778 4.30942 4.40507 4.45811 4.52695 4.59589 4.61554 4.63767 4.69769 4.70710 4.73599 4.80793 4.86194 4.87517 4.90170 5.00540 5.05565 5.09479 5.10097 5.12967 5.19705 5.21774 5.30202 5.35692 5.39695 5.44546 5.49267 5.51164 5.57289 5.68190 5.74744 5.89160 6.14714 6.23185 6.35092 6.73336 6.91594 7.02428 7.55318 9.00863 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.027872 B = 0.003180 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.339713 B = 8802.984223 C = 9382.512895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.139 4.139 3 C 0.226 3.774 4 H -0.007 1.007 5 C -0.499 4.499 6 H 0.052 0.948 7 C 0.013 3.987 8 N -0.922 5.922 9 Si 0.951 3.049 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.684 5.684 14 C 0.089 3.911 15 C -0.095 4.095 16 C 0.066 3.934 17 N -0.543 5.543 18 C 0.057 3.943 19 C -0.108 4.108 20 C -0.094 4.094 21 C -0.146 4.146 22 C -0.146 4.146 23 C 0.064 3.936 24 C -0.108 4.108 25 H 0.041 0.959 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.020 0.980 29 H 0.060 0.940 30 H 0.258 0.742 31 H 0.332 0.668 32 H 0.012 0.988 33 H 0.064 0.936 34 H 0.038 0.962 35 H 0.022 0.978 36 H 0.084 0.916 37 H 0.028 0.972 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.050 0.950 46 H 0.061 0.939 47 H 0.054 0.946 48 H 0.026 0.974 49 H 0.095 0.905 50 H 0.071 0.929 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.841 3.183 -20.596 21.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.178 4.178 3 C 0.117 3.883 4 H 0.011 0.989 5 C -0.538 4.538 6 H 0.070 0.930 7 C -0.185 4.185 8 N -0.563 5.563 9 Si 0.777 3.223 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.315 5.315 14 C -0.021 4.021 15 C -0.134 4.134 16 C -0.062 4.062 17 N -0.268 5.268 18 C -0.070 4.070 19 C -0.146 4.146 20 C -0.113 4.113 21 C -0.204 4.204 22 C -0.204 4.204 23 C -0.064 4.064 24 C -0.146 4.146 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.039 0.961 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.151 0.849 32 H 0.030 0.970 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.040 0.960 36 H 0.102 0.898 37 H 0.046 0.954 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.073 0.927 48 H 0.045 0.955 49 H 0.113 0.887 50 H 0.090 0.910 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.963 4.148 -20.290 21.551 hybrid contribution 0.053 -1.536 1.275 1.997 sum 6.016 2.612 -19.015 20.114 Atomic orbital electron populations 1.21444 0.95754 0.99381 1.00957 1.21954 0.96624 1.00213 0.99039 1.18899 0.93238 0.89191 0.86950 0.98894 1.21277 1.30327 1.11289 0.90895 0.93023 1.25602 0.95954 0.95894 1.01090 1.70014 1.39934 1.25133 1.21230 0.85723 0.79070 0.78737 0.78759 1.19573 1.21300 1.20178 1.60748 1.04637 1.62807 1.03285 1.21488 0.93768 0.95290 0.91593 1.21451 0.95743 0.99838 0.96362 1.22016 0.95985 0.99344 0.88903 1.61952 1.12635 1.50143 1.02050 1.22211 0.93870 0.97258 0.93689 1.21630 0.96578 0.98194 0.98170 1.21076 0.95960 0.99375 0.94894 1.21873 1.00133 1.01962 0.96393 1.21823 0.98556 0.98241 1.01742 1.22034 0.92371 0.92555 0.99433 1.21694 0.97633 1.02800 0.92457 0.93954 0.93085 0.93784 0.96106 0.92165 0.93277 0.84852 0.97029 0.91707 0.94358 0.96023 0.89762 0.95353 0.89480 0.91662 0.92695 0.91452 0.92417 0.92708 0.92220 0.93067 0.91983 0.92689 0.95524 0.88689 0.91017 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.96 9.40 71.98 0.68 -4.28 16 2 C -0.14 -6.62 5.49 30.60 0.17 -6.45 16 3 C 0.23 11.47 2.14 44.17 0.09 11.56 16 4 H -0.01 -0.40 7.19 -2.39 -0.02 -0.41 16 5 C -0.50 -27.62 7.39 25.60 0.19 -27.44 16 6 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 7 C 0.01 0.70 5.28 84.65 0.45 1.14 16 8 N -0.92 -53.60 11.37 21.45 0.24 -53.36 16 9 Si 0.95 44.44 29.54 68.60 2.03 46.46 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 13 N -0.68 -29.13 6.04 -472.89 -2.86 -31.99 16 14 C 0.09 3.23 2.35 44.99 0.11 3.33 16 15 C -0.10 -3.39 5.58 30.65 0.17 -3.22 16 16 C 0.07 1.87 5.29 86.33 0.46 2.33 16 17 N -0.54 -13.40 4.66 -896.33 -4.18 -17.58 16 18 C 0.06 1.10 4.72 86.30 0.41 1.51 16 19 C -0.11 -1.94 4.61 30.59 0.14 -1.80 16 20 C -0.09 -1.36 2.92 -10.80 -0.03 -1.39 16 21 C -0.15 -1.85 8.95 71.98 0.64 -1.21 16 22 C -0.15 -1.98 9.19 71.98 0.66 -1.32 16 23 C 0.06 1.53 5.46 86.33 0.47 2.01 16 24 C -0.11 -3.04 5.36 30.65 0.16 -2.87 16 25 H 0.04 1.97 7.12 -2.39 -0.02 1.95 16 26 H 0.05 1.90 6.36 -2.39 -0.02 1.89 16 27 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.02 0.91 7.40 -2.39 -0.02 0.89 16 29 H 0.06 3.28 6.21 -2.39 -0.01 3.26 16 30 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 31 H 0.33 13.23 6.14 -89.70 -0.55 12.68 16 32 H 0.01 0.47 7.11 -2.39 -0.02 0.45 16 33 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.04 1.56 7.52 -2.39 -0.02 1.54 16 35 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.08 2.20 6.21 -2.39 -0.01 2.18 16 37 H 0.03 0.56 8.12 -2.39 -0.02 0.54 16 38 H 0.09 1.47 6.41 -2.39 -0.02 1.45 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 40 H 0.05 1.08 6.43 -2.39 -0.02 1.06 16 41 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 42 H 0.06 0.71 6.56 -2.38 -0.02 0.69 16 43 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 44 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 48 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.09 1.83 8.02 -2.38 -0.02 1.81 16 50 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 51 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -59.58 375.85 0.31 -59.27 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.31 Total: 25.28 kcal Atomic # 6 Polarization: -32.85 SS G_CDS: 4.77 Total: -28.08 kcal Atomic # 7 Polarization: -96.14 SS G_CDS: -6.79 Total: -102.93 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -59.58 0.31 -59.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893607061.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.935 kcal (2) G-P(sol) polarization free energy of solvation -59.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds