Wall clock time and date at job start Tue Mar 31 2020 05:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47230 * 2 1 4 4 C 1.52995 * 109.47280 * 240.00178 * 2 1 3 5 5 C 1.50706 * 109.47203 * 59.99780 * 4 2 1 6 6 H 1.07997 * 119.99866 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99752 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00269 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99481 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47359 * 60.00656 * 9 7 5 11 11 H 1.48500 * 109.47060 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47649 * 300.00151 * 9 7 5 13 13 C 1.53000 * 109.47181 * 120.00031 * 2 1 3 14 14 N 1.46898 * 109.47005 * 300.00053 * 13 2 1 15 15 C 1.46904 * 110.99933 * 179.97438 * 14 13 2 16 16 C 1.52994 * 109.47115 * 179.97438 * 15 14 13 17 17 N 1.46899 * 109.47163 * 185.13486 * 16 15 14 18 18 C 1.48530 * 111.00168 * 184.26092 * 17 16 15 19 19 C 1.54939 * 103.38049 * 159.64105 * 18 17 16 20 20 C 1.54787 * 102.83176 * 322.80181 * 19 18 17 21 21 C 1.53000 * 110.15243 * 262.84659 * 20 19 18 22 22 C 1.53003 * 110.47796 * 140.76725 * 20 19 18 23 23 C 1.47900 * 111.00524 * 301.66251 * 17 16 15 24 24 H 1.09002 * 109.47635 * 299.99977 * 1 2 3 25 25 H 1.09004 * 109.47529 * 59.99744 * 1 2 3 26 26 H 1.09003 * 109.47473 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47361 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47604 * 300.00042 * 3 2 1 29 29 H 1.09001 * 109.47259 * 60.00119 * 3 2 1 30 30 H 1.08997 * 109.47509 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.47454 * 300.00176 * 4 2 1 32 32 H 0.96996 * 119.99627 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.47096 * 179.97438 * 13 2 1 34 34 H 1.09003 * 109.46659 * 59.99817 * 13 2 1 35 35 H 1.00901 * 111.00206 * 56.04984 * 14 13 2 36 36 H 1.09005 * 109.46691 * 60.00322 * 15 14 13 37 37 H 1.09000 * 109.47498 * 300.00183 * 15 14 13 38 38 H 1.09000 * 109.47170 * 65.14049 * 16 15 14 39 39 H 1.09003 * 109.47538 * 305.13798 * 16 15 14 40 40 H 1.09000 * 110.67244 * 278.15585 * 18 17 16 41 41 H 1.08998 * 110.66946 * 41.12302 * 18 17 16 42 42 H 1.09000 * 110.72574 * 81.02735 * 19 18 17 43 43 H 1.08994 * 110.72955 * 204.31755 * 19 18 17 44 44 H 1.08998 * 109.46764 * 175.71508 * 21 20 19 45 45 H 1.08999 * 109.46783 * 295.70970 * 21 20 19 46 46 H 1.08997 * 109.46990 * 55.71261 * 21 20 19 47 47 H 1.08998 * 109.47209 * 304.09758 * 22 20 19 48 48 H 1.09004 * 109.47158 * 64.09495 * 22 20 19 49 49 H 1.09000 * 109.47010 * 184.09369 * 22 20 19 50 50 H 1.09008 * 109.91496 * 333.50416 * 23 17 16 51 51 H 1.09002 * 109.92058 * 94.59814 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8712 -0.4815 -3.7320 8 7 2.6273 -1.5507 -3.8526 9 14 1.2490 0.3995 -5.2571 10 1 1.7442 1.7996 -5.2567 11 1 1.7440 -0.3005 -6.4697 12 1 -0.2359 0.3996 -5.2578 13 6 2.0399 -0.7213 1.2492 14 7 1.5503 -0.0288 2.4486 15 6 2.0208 -0.6953 3.6703 16 6 1.4923 0.0533 4.8955 17 7 2.0615 -0.5380 6.1138 18 6 1.4921 0.0969 7.3298 19 6 1.7649 -0.9479 8.4410 20 6 1.5442 -2.2938 7.7090 21 6 0.1296 -2.8126 7.9749 22 6 2.5807 -3.3248 8.1604 23 6 1.7242 -1.9746 6.2134 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1299 -0.7216 -1.2490 31 1 1.6766 -1.7489 -1.2493 32 1 2.8622 -1.8816 -4.7336 33 1 3.1299 -0.7216 1.2490 34 1 1.6765 -1.7489 1.2492 35 1 0.5437 0.0413 2.4402 36 1 3.1107 -0.6954 3.6873 37 1 1.6570 -1.7226 3.6869 38 1 0.4055 -0.0241 4.9277 39 1 1.7801 1.1027 4.8323 40 1 2.0030 1.0343 7.5496 41 1 0.4212 0.2623 7.2120 42 1 2.7909 -0.8696 8.8006 43 1 1.0574 -0.8317 9.2619 44 1 -0.0396 -3.7197 7.3947 45 1 0.0174 -3.0340 9.0363 46 1 -0.5964 -2.0538 7.6832 47 1 3.5827 -2.9271 7.9995 48 1 2.4412 -3.5405 9.2197 49 1 2.4565 -4.2413 7.5836 50 1 0.7972 -2.1764 5.6765 51 1 2.5325 -2.5756 5.7970 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898035106.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:33 Heat of formation + Delta-G solvation = -25.127086 kcal Electronic energy + Delta-G solvation = -22833.968971 eV Core-core repulsion = 19766.878359 eV Total energy + Delta-G solvation = -3067.090613 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.85116 -37.67905 -35.43368 -33.63794 -32.14617 -30.31838 -28.00129 -27.64119 -26.85535 -26.30458 -25.82890 -24.44988 -22.48432 -21.76233 -21.04279 -19.27711 -17.80945 -16.28002 -16.21142 -15.90300 -15.39883 -14.76765 -14.50180 -14.23540 -14.08509 -13.84247 -13.61791 -13.43570 -13.10475 -13.02955 -12.60599 -12.50523 -12.16507 -11.97919 -11.84193 -11.81586 -11.69521 -11.22230 -11.14307 -10.95578 -10.92641 -10.86599 -10.81282 -10.77505 -10.72920 -10.45841 -10.22566 -10.10415 -9.65207 -8.99230 -8.81320 -8.59027 -8.29342 -8.06601 -5.93960 -3.94080 3.36151 3.40697 3.42932 3.71595 4.21586 4.30734 4.48265 4.51675 4.70062 4.95819 4.99172 5.02660 5.12299 5.16597 5.30503 5.34006 5.39898 5.41702 5.48168 5.53285 5.55407 5.62336 5.69009 5.70344 5.77120 5.78783 5.87357 5.92810 5.96768 5.98972 6.04807 6.08426 6.28490 6.37098 6.53792 6.69204 6.69925 6.81210 6.85732 6.88406 7.23538 7.25762 7.29232 7.42926 7.69171 7.73828 7.88526 8.06432 8.50824 9.11099 9.68485 11.17750 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.038154 B = 0.002566 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.691096 B =10907.430920 C =11163.501698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 C -0.116 4.116 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.058 0.942 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.072 3.928 14 N -0.686 5.686 15 C 0.061 3.939 16 C 0.050 3.950 17 N -0.514 5.514 18 C 0.035 3.965 19 C -0.114 4.114 20 C -0.079 4.079 21 C -0.139 4.139 22 C -0.135 4.135 23 C 0.043 3.957 24 H 0.032 0.968 25 H 0.064 0.936 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.015 0.985 31 H 0.012 0.988 32 H 0.259 0.741 33 H 0.066 0.934 34 H 0.022 0.978 35 H 0.336 0.664 36 H 0.078 0.922 37 H 0.022 0.978 38 H 0.030 0.970 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.052 0.948 47 H 0.060 0.940 48 H 0.054 0.946 49 H 0.055 0.945 50 H 0.045 0.955 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.445 -0.572 25.148 25.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.059 4.059 3 C -0.173 4.173 4 C -0.004 4.004 5 C -0.545 4.545 6 H 0.076 0.924 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.057 4.057 14 N -0.318 5.318 15 C -0.069 4.069 16 C -0.078 4.078 17 N -0.239 5.239 18 C -0.092 4.092 19 C -0.152 4.152 20 C -0.079 4.079 21 C -0.196 4.196 22 C -0.193 4.193 23 C -0.085 4.085 24 H 0.051 0.949 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.033 0.967 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.040 0.960 35 H 0.154 0.846 36 H 0.096 0.904 37 H 0.041 0.959 38 H 0.048 0.952 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.061 0.939 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.074 0.926 50 H 0.063 0.937 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.289 -0.147 24.965 25.070 hybrid contribution -1.753 -0.593 -1.017 2.112 sum -4.042 -0.740 23.948 24.298 Atomic orbital electron populations 1.21769 0.96158 1.00298 1.00379 1.20626 0.94666 0.96171 0.94406 1.21596 0.99814 0.95772 1.00123 1.19121 0.96140 0.94952 0.90172 1.21203 1.30812 1.11879 0.90622 0.92353 1.25018 0.95425 0.95130 0.99044 1.69956 1.37244 1.23215 1.23376 0.86723 0.79114 0.79844 0.82693 1.20297 1.21454 1.20387 1.22092 0.99837 0.94549 0.89175 1.60510 1.16082 1.53914 1.01279 1.21909 1.01262 0.94580 0.89127 1.22253 0.96154 1.00198 0.89200 1.64745 1.54873 1.02529 1.01725 1.23202 0.97738 0.98223 0.90073 1.22653 1.02214 0.93331 0.97019 1.21470 0.95803 0.95716 0.94930 1.21910 0.95240 1.00927 1.01567 1.21845 0.98472 0.98161 1.00815 1.23038 1.00152 0.90206 0.95099 0.94858 0.91709 0.94177 0.94151 0.92721 0.93907 0.96654 0.96962 0.93118 0.91509 0.95994 0.84592 0.90385 0.95935 0.95193 0.89612 0.90040 0.93910 0.90603 0.91120 0.92470 0.92449 0.92850 0.92094 0.92725 0.92600 0.93698 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 7.89 37.15 0.29 -2.13 16 2 C -0.06 -1.18 0.60 -154.51 -0.09 -1.27 16 3 C -0.12 -2.29 8.06 37.16 0.30 -1.99 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -14.00 7.65 -34.44 -0.26 -14.26 16 6 H 0.06 1.56 5.68 -52.49 -0.30 1.27 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.07 1.28 4.65 -3.82 -0.02 1.27 16 14 N -0.69 -10.23 5.71 -113.78 -0.65 -10.88 16 15 C 0.06 0.80 5.44 -3.82 -0.02 0.78 16 16 C 0.05 0.57 5.08 -3.83 -0.02 0.55 16 17 N -0.51 -5.44 5.36 -230.46 -1.23 -6.68 16 18 C 0.04 0.31 6.55 -1.90 -0.01 0.30 16 19 C -0.11 -0.86 6.18 -24.77 -0.15 -1.01 16 20 C -0.08 -0.62 0.97 -153.05 -0.15 -0.77 16 21 C -0.14 -0.99 8.20 37.16 0.30 -0.68 16 22 C -0.14 -0.97 8.24 37.16 0.31 -0.67 16 23 C 0.04 0.42 4.79 -2.76 -0.01 0.41 16 24 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 25 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.05 1.15 6.62 -51.93 -0.34 0.80 16 29 H 0.04 0.76 7.60 -51.93 -0.39 0.36 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.34 4.78 6.77 -39.29 -0.27 4.51 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.02 0.30 7.14 -51.93 -0.37 -0.07 16 38 H 0.03 0.33 8.00 -51.93 -0.42 -0.08 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.04 0.37 7.94 -51.93 -0.41 -0.04 16 42 H 0.08 0.58 7.85 -51.93 -0.41 0.17 16 43 H 0.07 0.45 7.85 -51.93 -0.41 0.04 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.47 8.12 -51.93 -0.42 0.04 16 48 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.04 0.46 6.98 -51.92 -0.36 0.10 16 51 H 0.08 0.82 7.69 -51.93 -0.40 0.42 16 LS Contribution 382.75 15.07 5.77 5.77 Total: -1.00 -29.04 382.75 -10.39 -39.43 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -10.24 Total: -0.74 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 0.25 Total: -17.27 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: -1.15 Total: -43.92 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.04 -10.39 -39.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898035106.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.303 kcal (2) G-P(sol) polarization free energy of solvation -29.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds