Wall clock time and date at job start Tue Mar 31 2020 05:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.46985 * 2 1 4 4 C 1.46494 * 120.00145 * 278.97619 * 3 2 1 5 5 C 1.50696 * 109.47346 * 270.00106 * 4 3 2 6 6 H 1.08004 * 119.99933 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99983 * 180.02562 * 5 4 3 8 8 N 1.31506 * 120.00228 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99801 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47511 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47184 * 119.99870 * 9 7 5 12 12 H 1.48495 * 109.47219 * 240.00031 * 9 7 5 13 13 C 1.34774 * 119.99520 * 98.97537 * 3 2 1 14 14 O 1.21279 * 119.99434 * 180.14146 * 13 3 2 15 15 C 1.50698 * 120.00507 * 0.14268 * 13 3 2 16 16 C 1.52998 * 109.46975 * 289.37348 * 15 13 3 17 17 C 1.52998 * 109.47225 * 169.37489 * 15 13 3 18 18 N 1.46900 * 109.47021 * 49.37331 * 15 13 3 19 19 C 1.46845 * 111.00063 * 185.83187 * 18 15 13 20 20 C 1.53036 * 109.52582 * 174.15945 * 19 18 15 21 21 C 1.53125 * 109.27868 * 59.17681 * 20 19 18 22 22 C 1.53117 * 109.15845 * 302.34622 * 21 20 19 23 23 C 1.46842 * 111.00125 * 61.61791 * 18 15 13 24 24 H 1.08996 * 109.46813 * 310.40189 * 1 2 3 25 25 H 1.08994 * 109.47456 * 70.40460 * 1 2 3 26 26 H 1.09001 * 109.46584 * 190.39853 * 1 2 3 27 27 H 1.09009 * 109.47032 * 240.00466 * 2 1 3 28 28 H 1.09001 * 109.47671 * 120.00046 * 2 1 3 29 29 H 1.09006 * 109.47481 * 29.99866 * 4 3 2 30 30 H 1.08996 * 109.47536 * 149.99803 * 4 3 2 31 31 H 0.97004 * 119.99900 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47491 * 194.18533 * 16 15 13 33 33 H 1.08998 * 109.47194 * 314.18957 * 16 15 13 34 34 H 1.09004 * 109.47049 * 74.18362 * 16 15 13 35 35 H 1.09002 * 109.47132 * 299.99862 * 17 15 13 36 36 H 1.08995 * 109.47168 * 60.00082 * 17 15 13 37 37 H 1.09004 * 109.46912 * 179.97438 * 17 15 13 38 38 H 1.09004 * 109.46370 * 54.13921 * 19 18 15 39 39 H 1.09004 * 109.46258 * 294.17608 * 19 18 15 40 40 H 1.09000 * 109.50554 * 179.11984 * 20 19 18 41 41 H 1.09002 * 109.50085 * 299.23880 * 20 19 18 42 42 H 1.09004 * 109.52042 * 62.25216 * 21 20 19 43 43 H 1.08994 * 109.52010 * 182.44069 * 21 20 19 44 44 H 1.09003 * 109.50326 * 177.59099 * 22 21 20 45 45 H 1.08993 * 109.50691 * 297.71330 * 22 21 20 46 46 H 1.09000 * 109.45945 * 65.82521 * 23 18 15 47 47 H 1.08997 * 109.46424 * 305.85620 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0759 2.1379 -1.2531 5 6 3.4187 1.9296 -1.9045 6 1 4.1555 1.2965 -1.4325 7 6 3.7067 2.5472 -3.1031 8 7 2.8094 3.3176 -3.6782 9 14 5.3715 2.2895 -3.9102 10 1 6.1956 1.3861 -3.0677 11 1 5.1825 1.6806 -5.2514 12 1 6.0602 3.5973 -4.0529 13 6 2.4146 1.9558 1.1529 14 8 2.8164 3.1001 1.1533 15 6 2.3584 1.1765 2.4415 16 6 0.8987 0.9795 2.8551 17 6 3.0991 1.9471 3.5363 18 7 2.9941 -0.1338 2.2494 19 6 2.8366 -0.9752 3.4425 20 6 3.3801 -2.3767 3.1555 21 6 4.8587 -2.2764 2.7703 22 6 5.0000 -1.3562 1.5547 23 6 4.4095 0.0158 1.8882 24 1 -0.3633 0.6661 0.7826 25 1 -0.3634 0.3446 -0.9681 26 1 -0.3632 -1.0108 0.1855 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8900 29 1 1.2893 1.7912 -1.9234 30 1 1.9339 3.1982 -1.0443 31 1 3.0119 3.7518 -4.5216 32 1 0.8566 0.6468 3.8923 33 1 0.3619 1.9228 2.7541 34 1 0.4375 0.2285 2.2137 35 1 4.1391 2.0875 3.2416 36 1 2.6275 2.9193 3.6789 37 1 3.0581 1.3835 4.4685 38 1 1.7803 -1.0416 3.7033 39 1 3.3884 -0.5347 4.2730 40 1 3.2773 -2.9964 4.0463 41 1 2.8196 -2.8232 2.3342 42 1 5.4258 -1.8659 3.6059 43 1 5.2387 -3.2676 2.5231 44 1 6.0547 -1.2467 1.3018 45 1 4.4650 -1.7866 0.7083 46 1 4.9539 0.4516 2.7259 47 1 4.4957 0.6690 1.0199 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906375069.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:17 Heat of formation + Delta-G solvation = -28.883495 kcal Electronic energy + Delta-G solvation = -25040.430414 eV Core-core repulsion = 21837.343816 eV Total energy + Delta-G solvation = -3203.086597 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.50691 -37.97907 -35.17471 -34.82527 -32.60597 -30.99814 -30.31057 -29.80183 -27.39644 -26.96241 -24.58657 -23.41360 -22.79126 -22.39579 -20.88290 -19.34273 -17.90512 -16.95026 -16.21934 -15.60645 -15.34094 -14.76700 -14.49595 -14.37013 -14.05367 -14.02456 -13.52039 -13.22306 -13.13306 -12.91713 -12.51172 -12.34535 -12.05975 -11.93104 -11.79617 -11.67059 -11.56576 -11.30882 -11.20865 -11.06500 -10.85315 -10.76626 -10.66874 -10.48906 -10.32585 -10.26793 -10.20913 -10.03593 -9.51023 -8.78600 -8.36887 -7.93108 -7.41484 -5.97085 -4.00811 3.32898 3.36406 3.40696 3.44987 4.01037 4.11862 4.49847 4.80857 4.83171 4.92716 4.99137 5.19287 5.30146 5.33680 5.38096 5.40610 5.51531 5.62090 5.66669 5.68580 5.77415 5.80946 5.86925 5.90704 5.92995 5.97388 6.01534 6.03763 6.11754 6.16950 6.20862 6.33854 6.37442 6.46081 6.53389 6.59320 6.95603 7.09445 7.15325 7.26466 7.55920 7.74290 8.01308 8.33770 8.64613 8.99447 9.25045 9.64036 11.10964 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016822 B = 0.006501 C = 0.005701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.126741 B = 4305.973045 C = 4910.474200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.069 3.931 3 N -0.578 5.578 4 C 0.243 3.757 5 C -0.517 4.517 6 H 0.057 0.943 7 C 0.059 3.941 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.518 3.482 14 O -0.549 6.549 15 C 0.087 3.913 16 C -0.151 4.151 17 C -0.161 4.161 18 N -0.509 5.509 19 C 0.045 3.955 20 C -0.115 4.115 21 C -0.120 4.120 22 C -0.115 4.115 23 C 0.046 3.954 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.135 0.865 29 H 0.030 0.970 30 H 0.039 0.961 31 H 0.261 0.739 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.036 0.964 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.037 0.963 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.624 -12.261 14.996 19.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.055 4.055 3 N -0.307 5.307 4 C 0.124 3.876 5 C -0.556 4.556 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.210 1.210 13 C 0.303 3.697 14 O -0.427 6.427 15 C -0.005 4.005 16 C -0.208 4.208 17 C -0.220 4.220 18 N -0.235 5.235 19 C -0.082 4.082 20 C -0.153 4.153 21 C -0.158 4.158 22 C -0.153 4.153 23 C -0.081 4.081 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.152 0.848 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.054 0.946 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.055 0.945 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.680 -11.769 14.407 18.679 hybrid contribution 1.270 0.372 -0.083 1.326 sum -0.410 -11.397 14.325 18.310 Atomic orbital electron populations 1.22363 0.98141 1.00678 1.01871 1.22393 0.92640 0.84328 1.06185 1.48066 1.60830 1.13613 1.08217 1.19239 0.96860 0.92396 0.79114 1.21465 1.00022 1.28820 1.05323 0.92471 1.24930 0.97053 0.95108 0.97127 1.69946 1.34159 1.31347 1.18125 0.86491 0.84198 0.77939 0.79079 1.19819 1.21054 1.21018 1.19914 0.78454 0.86741 0.84557 1.90665 1.47397 1.18518 1.86157 1.21344 0.95966 0.88691 0.94503 1.22209 0.93747 1.03306 1.01533 1.22180 1.01597 1.01047 0.97128 1.62233 1.15025 1.12334 1.33876 1.22236 1.01231 0.93439 0.91340 1.21585 0.96213 0.96016 1.01492 1.21584 0.96437 0.99606 0.98148 1.21568 1.00550 0.94837 0.98331 1.22226 0.86995 0.97873 1.00994 0.92658 0.93065 0.92755 0.91840 0.84845 0.95230 0.94330 0.92927 0.92193 0.91791 0.89657 0.91878 0.91211 0.92622 0.90267 0.94582 0.91888 0.90951 0.92602 0.92087 0.91673 0.90752 0.94455 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 9.15 37.16 0.34 -2.24 16 2 C 0.07 1.19 5.45 -4.04 -0.02 1.17 16 3 N -0.58 -12.53 2.47 -175.06 -0.43 -12.97 16 4 C 0.24 6.55 5.17 -5.20 -0.03 6.52 16 5 C -0.52 -14.90 9.39 -34.44 -0.32 -15.22 16 6 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 9 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 13 C 0.52 10.98 5.07 -10.99 -0.06 10.92 16 14 O -0.55 -14.14 15.56 5.56 0.09 -14.05 16 15 C 0.09 1.35 0.29 -132.76 -0.04 1.31 16 16 C -0.15 -1.92 6.65 37.16 0.25 -1.67 16 17 C -0.16 -2.35 7.09 37.16 0.26 -2.09 16 18 N -0.51 -6.88 1.31 -220.36 -0.29 -7.17 16 19 C 0.05 0.47 4.70 -3.84 -0.02 0.45 16 20 C -0.12 -1.06 6.09 -26.65 -0.16 -1.23 16 21 C -0.12 -1.19 6.00 -26.61 -0.16 -1.35 16 22 C -0.12 -1.44 6.09 -26.65 -0.16 -1.60 16 23 C 0.05 0.69 4.66 -3.83 -0.02 0.67 16 24 H 0.05 0.80 5.98 -51.93 -0.31 0.49 16 25 H 0.05 0.84 8.12 -51.93 -0.42 0.42 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 1.19 8.13 -51.92 -0.42 0.77 16 28 H 0.13 2.05 3.78 -52.86 -0.20 1.85 16 29 H 0.03 0.82 8.05 -51.93 -0.42 0.40 16 30 H 0.04 1.17 7.42 -51.93 -0.39 0.79 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.06 0.61 7.00 -51.93 -0.36 0.25 16 33 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16 34 H 0.08 1.05 4.25 -51.93 -0.22 0.83 16 35 H 0.06 1.01 6.51 -51.93 -0.34 0.67 16 36 H 0.07 1.08 7.98 -51.93 -0.41 0.67 16 37 H 0.05 0.66 6.68 -51.93 -0.35 0.31 16 38 H 0.08 0.74 6.20 -51.93 -0.32 0.42 16 39 H 0.04 0.38 6.75 -51.93 -0.35 0.03 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.04 0.54 6.61 -51.93 -0.34 0.19 16 47 H 0.09 1.67 6.94 -51.93 -0.36 1.31 16 LS Contribution 346.32 15.07 5.22 5.22 Total: -1.00 -32.34 346.32 -8.07 -40.41 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -8.14 Total: 0.52 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -0.23 Total: -2.73 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.02 Total: -46.59 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.09 Total: -14.05 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.34 -8.07 -40.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906375069.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.529 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds