Wall clock time and date at job start Tue Mar 31 2020 05:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 C 1.52997 * 109.47469 * 184.99697 * 4 2 1 6 6 N 1.46892 * 109.47495 * 179.97438 * 5 4 2 7 7 C 1.46852 * 110.99817 * 294.21363 * 6 5 4 8 8 C 1.53043 * 109.52026 * 174.15932 * 7 6 5 9 9 C 1.53115 * 109.28020 * 59.17820 * 8 7 6 10 10 N 1.46897 * 109.52246 * 182.44159 * 9 8 7 11 11 C 1.46901 * 110.99764 * 274.67998 * 10 9 8 12 12 C 1.53001 * 109.47125 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47334 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.47230 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99786 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99530 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99539 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00599 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.46718 * 89.99962 * 18 16 14 20 20 H 1.48497 * 109.47497 * 210.00086 * 18 16 14 21 21 H 1.48500 * 109.47158 * 330.00744 * 18 16 14 22 22 C 1.53120 * 109.15995 * 302.34203 * 9 8 7 23 23 C 1.46845 * 111.00255 * 170.00206 * 6 5 4 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 29 29 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 30 30 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.46873 * 304.99791 * 4 2 1 32 32 H 1.08997 * 109.47047 * 64.99480 * 4 2 1 33 33 H 1.08997 * 109.47151 * 300.00410 * 5 4 2 34 34 H 1.09006 * 109.46918 * 59.99351 * 5 4 2 35 35 H 1.09004 * 109.46034 * 294.16866 * 7 6 5 36 36 H 1.08996 * 109.46305 * 54.14398 * 7 6 5 37 37 H 1.09002 * 109.50520 * 299.23422 * 8 7 6 38 38 H 1.08999 * 109.49995 * 179.11563 * 8 7 6 39 39 H 1.09004 * 109.57701 * 62.27582 * 9 8 7 40 40 H 1.00899 * 110.99831 * 150.73064 * 10 9 8 41 41 H 1.08999 * 109.47259 * 299.99820 * 11 10 9 42 42 H 1.08993 * 109.47239 * 60.00127 * 11 10 9 43 43 H 1.08997 * 109.47183 * 299.99770 * 12 11 10 44 44 H 1.09006 * 109.47445 * 60.00058 * 12 11 10 45 45 H 1.09008 * 109.47046 * 299.99661 * 13 12 11 46 46 H 1.08993 * 109.47375 * 59.99633 * 13 12 11 47 47 H 0.97001 * 120.00209 * 179.97438 * 17 16 14 48 48 H 1.08998 * 109.50864 * 297.71631 * 22 9 8 49 49 H 1.09002 * 109.50527 * 177.59089 * 22 9 8 50 50 H 1.09004 * 109.45908 * 305.85182 * 23 6 5 51 51 H 1.08997 * 109.46329 * 65.83461 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.8309 -1.1881 6 7 4.0545 -1.5239 -2.3872 7 6 3.5991 -2.9198 -2.4112 8 6 4.0028 -3.5667 -3.7381 9 6 5.5253 -3.5043 -3.8883 10 7 5.9141 -4.0712 -5.1865 11 6 6.0530 -5.5313 -5.1029 12 6 6.4585 -6.0842 -6.4707 13 6 6.6026 -7.6048 -6.3839 14 6 7.0025 -8.1493 -7.7310 15 1 7.1398 -7.4779 -8.5657 16 6 7.1922 -9.5047 -7.8980 17 7 7.5407 -9.9799 -9.0737 18 14 6.9541 -10.6661 -6.4544 19 1 5.5410 -11.1208 -6.4128 20 1 7.8479 -11.8415 -6.6120 21 1 7.2840 -9.9593 -5.1908 22 6 5.9784 -2.0437 -3.8116 23 6 5.5175 -1.4409 -2.4825 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6054 -1.7198 -1.2952 32 1 1.7516 -0.1583 -2.1370 33 1 3.9994 0.1676 -1.1421 34 1 3.8533 -1.3938 -0.3003 35 1 4.0577 -3.4656 -1.5866 36 1 2.5144 -2.9498 -2.3077 37 1 3.5334 -3.0298 -4.5624 38 1 3.6784 -4.6073 -3.7491 39 1 5.9951 -4.0740 -3.0865 40 1 6.7635 -3.6461 -5.5269 41 1 6.8186 -5.7820 -4.3687 42 1 5.1022 -5.9700 -4.8007 43 1 5.6932 -5.8335 -7.2053 44 1 7.4095 -5.6454 -6.7727 45 1 7.3677 -7.8559 -5.6492 46 1 5.6514 -8.0433 -6.0822 47 1 7.6746 -10.9335 -9.1912 48 1 5.5401 -1.4828 -4.6370 49 1 7.0655 -1.9961 -3.8751 50 1 5.8261 -0.3967 -2.4309 51 1 5.9671 -1.9938 -1.6578 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924942835.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:39 Heat of formation + Delta-G solvation = -35.486613 kcal Electronic energy + Delta-G solvation = -22229.673669 eV Core-core repulsion = 19162.133833 eV Total energy + Delta-G solvation = -3067.539836 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.56611 -37.35600 -35.94466 -33.88436 -32.29046 -31.06301 -30.67157 -28.52131 -27.54385 -26.29151 -23.98012 -23.37093 -22.06934 -21.45699 -20.24770 -20.22337 -19.56119 -16.69831 -16.35902 -15.91120 -15.46896 -15.04340 -14.94129 -14.74051 -14.30891 -14.18038 -13.96241 -13.69670 -13.44900 -13.11986 -12.88770 -12.59903 -12.54427 -12.30533 -12.11629 -12.02534 -11.77274 -11.60467 -11.31560 -11.24447 -11.08911 -10.99888 -10.89629 -10.85168 -10.77017 -10.52520 -10.33436 -9.90289 -9.69364 -9.51340 -9.13766 -8.53773 -8.50774 -8.19765 -6.01082 -3.98558 3.32419 3.39372 3.43259 3.60566 4.26215 4.42887 4.47774 4.49760 4.58648 4.69145 4.77577 4.91182 5.02167 5.09140 5.15935 5.22666 5.27446 5.30275 5.32765 5.33138 5.40394 5.46238 5.48107 5.54588 5.58191 5.60486 5.66826 5.70157 5.74407 5.77044 5.83488 5.89362 5.97392 6.00880 6.06056 6.10850 6.21347 6.35948 6.59885 6.63427 6.88602 6.89362 6.95953 7.28514 7.39024 7.48029 7.63458 7.83747 8.58522 9.04694 9.61627 11.12504 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.034468 B = 0.002292 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.147649 B =12214.954080 C =12652.483183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.112 4.112 5 C 0.054 3.946 6 N -0.537 5.537 7 C 0.054 3.946 8 C -0.104 4.104 9 C 0.086 3.914 10 N -0.686 5.686 11 C 0.058 3.942 12 C -0.099 4.099 13 C -0.013 4.013 14 C -0.518 4.518 15 H 0.072 0.928 16 C 0.064 3.936 17 N -0.905 5.905 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.267 1.267 22 C -0.118 4.118 23 C 0.061 3.939 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.036 0.964 40 H 0.339 0.661 41 H 0.022 0.978 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.012 0.988 46 H 0.011 0.989 47 H 0.262 0.738 48 H 0.081 0.919 49 H 0.064 0.936 50 H 0.074 0.926 51 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.120 22.374 20.556 32.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.206 4.206 4 C -0.150 4.150 5 C -0.073 4.073 6 N -0.262 5.262 7 C -0.074 4.074 8 C -0.142 4.142 9 C -0.024 4.024 10 N -0.316 5.316 11 C -0.071 4.071 12 C -0.137 4.137 13 C -0.051 4.051 14 C -0.556 4.556 15 H 0.090 0.910 16 C -0.137 4.137 17 N -0.544 5.544 18 Si 0.708 3.292 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.191 1.191 22 C -0.156 4.156 23 C -0.068 4.068 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.054 0.946 40 H 0.157 0.843 41 H 0.040 0.960 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.031 0.969 46 H 0.029 0.971 47 H 0.072 0.928 48 H 0.100 0.900 49 H 0.083 0.917 50 H 0.092 0.908 51 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -10.905 22.407 19.807 31.832 hybrid contribution 1.131 -1.316 1.894 2.569 sum -9.774 21.091 21.701 31.801 Atomic orbital electron populations 1.21828 0.95118 1.01750 1.01736 1.21103 0.95822 0.96410 0.98270 1.21891 1.01053 0.95950 1.01694 1.21674 0.94498 1.00805 0.98015 1.22167 0.95880 0.98729 0.90558 1.61936 1.10582 1.14829 1.38836 1.22174 1.00433 0.87497 0.97302 1.21575 0.95333 1.00434 0.96893 1.21541 0.95966 0.94088 0.90819 1.60537 1.39705 1.05545 1.25847 1.22181 0.99780 0.86388 0.98745 1.21442 1.00535 0.97504 0.94258 1.19545 0.96069 0.91706 0.97778 1.21161 1.46159 0.92981 0.95299 0.91008 1.25049 0.94709 0.98319 0.95579 1.69919 1.48197 1.13544 1.22724 0.86763 0.78236 0.80501 0.83674 1.20296 1.21442 1.19143 1.21770 1.00060 0.95779 0.97996 1.22023 0.87298 1.00592 0.96873 0.92723 0.92827 0.92566 0.91517 0.92533 0.92965 0.92586 0.91853 0.90949 0.90694 0.95252 0.95325 0.90407 0.90277 0.91590 0.94649 0.84293 0.96017 0.91605 0.91937 0.93061 0.96932 0.97091 0.92805 0.90036 0.91709 0.90752 0.95202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.19 37.16 0.34 -0.51 16 2 C -0.10 -0.60 2.92 -90.62 -0.26 -0.86 16 3 C -0.15 -0.84 8.95 37.16 0.33 -0.51 16 4 C -0.11 -0.81 4.61 -26.73 -0.12 -0.93 16 5 C 0.05 0.43 4.71 -3.83 -0.02 0.41 16 6 N -0.54 -5.15 4.66 -234.67 -1.09 -6.24 16 7 C 0.05 0.54 5.29 -3.83 -0.02 0.52 16 8 C -0.10 -1.23 5.59 -26.65 -0.15 -1.38 16 9 C 0.09 1.05 2.56 -67.59 -0.17 0.87 16 10 N -0.69 -9.82 6.31 -106.60 -0.67 -10.50 16 11 C 0.06 0.97 5.49 -3.82 -0.02 0.95 16 12 C -0.10 -2.02 5.41 -26.73 -0.14 -2.17 16 13 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 14 C -0.52 -15.15 9.66 -34.44 -0.33 -15.48 16 15 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 16 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 17 N -0.90 -28.40 13.96 55.43 0.77 -27.63 16 18 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 22 C -0.12 -1.20 5.36 -26.65 -0.14 -1.35 16 23 C 0.06 0.56 5.46 -3.83 -0.02 0.54 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.31 6.56 -51.93 -0.34 -0.03 16 31 H 0.06 0.48 6.43 -51.92 -0.33 0.15 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.55 6.41 -51.93 -0.33 0.22 16 34 H 0.03 0.24 8.12 -51.93 -0.42 -0.18 16 35 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.73 6.21 -51.93 -0.32 0.40 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 0.82 7.54 -51.93 -0.39 0.43 16 39 H 0.04 0.46 7.80 -51.93 -0.41 0.05 16 40 H 0.34 4.56 8.36 -39.29 -0.33 4.23 16 41 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 42 H 0.07 1.11 7.51 -51.93 -0.39 0.72 16 43 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.01 0.30 7.20 -51.92 -0.37 -0.07 16 46 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 47 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 48 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 50 H 0.07 0.60 8.02 -51.93 -0.42 0.19 16 51 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 383.95 15.07 5.79 5.79 Total: -1.00 -30.52 383.95 -11.20 -41.72 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -10.37 Total: -2.11 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -0.95 Total: -18.51 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -0.99 Total: -44.37 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.52 -11.20 -41.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924942835.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.229 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds