Wall clock time and date at job start Tue Mar 31 2020 05:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 110.99673 * 2 1 4 4 C 1.53001 * 109.46743 * 66.04975 * 3 2 1 5 5 C 1.53006 * 117.49559 * 243.74212 * 4 3 2 6 6 C 1.53008 * 117.49640 * 175.08682 * 4 3 2 7 7 C 1.46904 * 111.00283 * 236.04696 * 2 1 3 8 8 C 1.53000 * 109.47035 * 293.95245 * 7 2 1 9 9 H 1.09003 * 110.62849 * 51.89697 * 8 7 2 10 10 C 1.55135 * 110.85764 * 288.68278 * 8 7 2 11 11 C 1.54901 * 101.65493 * 205.89651 * 10 8 7 12 12 N 1.47847 * 104.79797 * 37.06961 * 11 10 8 13 13 C 1.46896 * 111.00107 * 213.63897 * 12 11 10 14 14 C 1.53001 * 109.47230 * 290.84272 * 13 12 11 15 15 H 1.08998 * 109.47065 * 59.99662 * 14 13 12 16 16 O 1.42908 * 109.46829 * 300.00177 * 14 13 12 17 17 C 1.50697 * 109.46995 * 180.02562 * 14 13 12 18 18 H 1.07991 * 120.00449 * 359.72153 * 17 14 13 19 19 C 1.37885 * 119.99686 * 179.97438 * 17 14 13 20 20 N 1.31516 * 119.99913 * 359.72095 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.72528 * 19 17 14 22 22 H 1.48493 * 109.47326 * 90.00142 * 21 19 17 23 23 H 1.48506 * 109.46545 * 209.99892 * 21 19 17 24 24 H 1.48498 * 109.47210 * 329.99603 * 21 19 17 25 25 C 1.47452 * 108.56480 * 335.90609 * 12 11 10 26 26 H 1.09006 * 109.46533 * 183.95078 * 1 2 3 27 27 H 1.08998 * 109.47237 * 303.94702 * 1 2 3 28 28 H 1.09004 * 109.47268 * 63.95644 * 1 2 3 29 29 H 1.09006 * 109.46731 * 186.04450 * 3 2 1 30 30 H 1.08992 * 109.47184 * 306.04602 * 3 2 1 31 31 H 1.08991 * 115.55632 * 29.41313 * 4 3 2 32 32 H 1.09005 * 117.49464 * 0.02562 * 5 4 3 33 33 H 1.08999 * 117.49618 * 145.01878 * 5 4 3 34 34 H 1.08995 * 117.49548 * 214.97627 * 6 4 3 35 35 H 1.09003 * 117.49575 * 359.97438 * 6 4 3 36 36 H 1.09004 * 109.47186 * 173.95082 * 7 2 1 37 37 H 1.09008 * 109.46776 * 53.95489 * 7 2 1 38 38 H 1.09007 * 110.99002 * 323.98693 * 10 8 7 39 39 H 1.08999 * 110.98760 * 87.76590 * 10 8 7 40 40 H 1.09004 * 110.37585 * 278.24443 * 11 10 8 41 41 H 1.09000 * 110.37678 * 155.90333 * 11 10 8 42 42 H 1.08998 * 109.47372 * 170.84123 * 13 12 11 43 43 H 1.09006 * 109.47513 * 50.84294 * 13 12 11 44 44 H 0.96704 * 113.99704 * 299.99964 * 16 14 13 45 45 H 0.97000 * 119.99651 * 180.02562 * 20 19 17 46 46 H 1.08997 * 109.88783 * 120.39541 * 25 12 11 47 47 H 1.09003 * 109.88436 * 241.42294 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6313 2.0574 1.3183 5 6 0.7035 3.2720 1.2500 6 6 2.1901 3.4607 1.5624 7 6 1.9955 -0.7660 -1.1376 8 6 1.6316 -2.2426 -0.9704 9 1 0.5631 -2.3564 -0.7871 10 6 2.4562 -2.8886 0.1739 11 6 2.4713 -4.3775 -0.2532 12 7 2.5829 -4.3464 -1.7271 13 6 1.8538 -5.4680 -2.3340 14 6 2.5731 -6.7789 -2.0099 15 1 2.6130 -6.9138 -0.9290 16 8 3.9019 -6.7353 -2.5338 17 6 1.8254 -7.9295 -2.6330 18 1 0.9247 -7.7447 -3.1994 19 6 2.2886 -9.2186 -2.4757 20 7 3.3858 -9.4436 -1.7863 21 14 1.3576 -10.6455 -3.2416 22 1 1.8717 -10.8930 -4.6126 23 1 1.5498 -11.8632 -2.4136 24 1 -0.0885 -10.3147 -3.3073 25 6 2.0620 -3.0543 -2.2102 26 1 -0.3632 -1.0253 0.0708 27 1 -0.3633 0.5739 0.8525 28 1 -0.3634 0.4512 -0.9233 29 1 3.0797 1.3444 -0.1082 30 1 1.5610 1.9273 -0.8308 31 1 1.5339 1.3976 2.1804 32 1 0.3521 3.5822 0.2659 33 1 -0.0041 3.4114 2.0673 34 1 2.4599 3.7241 2.5850 35 1 2.8173 3.8950 0.7838 36 1 3.0798 -0.6610 -1.1756 37 1 1.5611 -0.3871 -2.0629 38 1 3.4668 -2.4811 0.2050 39 1 1.9568 -2.7623 1.1345 40 1 1.5451 -4.8677 0.0469 41 1 3.3302 -4.8884 0.1818 42 1 1.8139 -5.3331 -3.4149 43 1 0.8402 -5.5013 -1.9344 44 1 3.9429 -6.6168 -3.4927 45 1 3.7118 -10.3505 -1.6759 46 1 2.8421 -2.5191 -2.7514 47 1 1.2052 -3.2208 -2.8632 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929762011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:36 Heat of formation + Delta-G solvation = -19.199527 kcal Electronic energy + Delta-G solvation = -22510.038104 eV Core-core repulsion = 19307.371435 eV Total energy + Delta-G solvation = -3202.666669 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.30293 -38.24099 -36.31979 -35.19160 -32.07206 -31.77082 -29.23235 -28.05964 -27.83087 -26.08566 -24.23415 -22.69801 -22.37660 -21.36218 -20.54822 -19.81155 -19.75808 -16.91166 -16.50219 -15.99006 -15.38396 -15.05168 -14.83166 -14.51594 -14.26214 -14.02707 -13.94241 -13.55479 -13.25429 -12.85857 -12.68036 -12.58427 -12.07645 -11.95538 -11.83229 -11.80243 -11.50000 -11.41187 -10.96715 -10.92450 -10.84713 -10.73175 -10.63928 -10.46503 -10.42760 -10.23162 -10.18733 -9.99449 -8.91221 -8.53310 -8.49558 -8.01395 -7.54794 -5.95643 -4.14050 3.29831 3.36640 3.39107 3.42189 3.69380 4.38902 4.45460 4.58985 4.63494 4.68494 4.81098 4.88725 4.97988 5.15394 5.18190 5.26379 5.29857 5.31730 5.39819 5.46574 5.49674 5.55471 5.60696 5.70329 5.72815 5.77112 5.81431 5.89210 5.96444 6.05398 6.13908 6.21843 6.27527 6.36379 6.55942 6.57260 6.66829 6.87439 6.88749 6.91018 7.57558 7.72149 7.82994 7.94057 8.26389 8.90173 9.52067 9.69168 11.08384 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.049017 B = 0.002630 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.089128 B =10643.457337 C =10782.376436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.537 5.537 3 C 0.086 3.914 4 C -0.144 4.144 5 C -0.186 4.186 6 C -0.179 4.179 7 C 0.069 3.931 8 C -0.106 4.106 9 H 0.072 0.928 10 C -0.108 4.108 11 C 0.044 3.956 12 N -0.517 5.517 13 C 0.027 3.973 14 C 0.238 3.762 15 H 0.053 0.947 16 O -0.554 6.554 17 C -0.574 4.574 18 H 0.053 0.947 19 C 0.079 3.921 20 N -0.858 5.858 21 Si 0.888 3.112 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.275 1.275 25 C 0.046 3.954 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.022 0.978 29 H 0.078 0.922 30 H 0.032 0.968 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.032 0.968 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.041 0.959 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.025 0.975 44 H 0.342 0.658 45 H 0.260 0.740 46 H 0.069 0.931 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.695 23.360 4.371 24.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.260 5.260 3 C -0.042 4.042 4 C -0.162 4.162 5 C -0.223 4.223 6 C -0.216 4.216 7 C -0.059 4.059 8 C -0.126 4.126 9 H 0.091 0.909 10 C -0.146 4.146 11 C -0.083 4.083 12 N -0.241 5.241 13 C -0.101 4.101 14 C 0.180 3.820 15 H 0.070 0.930 16 O -0.355 6.355 17 C -0.613 4.613 18 H 0.072 0.928 19 C -0.127 4.127 20 N -0.494 5.494 21 Si 0.716 3.284 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.082 4.082 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.040 0.960 29 H 0.096 0.904 30 H 0.051 0.949 31 H 0.131 0.869 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.050 0.950 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.044 0.956 44 H 0.184 0.816 45 H 0.070 0.930 46 H 0.087 0.913 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.738 22.842 5.365 23.759 hybrid contribution -2.005 -0.312 -1.550 2.553 sum -5.743 22.530 3.815 23.561 Atomic orbital electron populations 1.22427 0.87552 1.02269 1.00271 1.61927 1.07896 1.12700 1.43524 1.21674 1.00021 0.88160 0.94375 1.22307 1.03888 0.90141 0.99869 1.23072 0.93259 1.03141 1.02807 1.22957 0.96420 0.99602 1.02660 1.22120 1.00185 0.93003 0.90626 1.22412 1.00027 0.93488 0.96633 0.90942 1.22614 0.99964 0.94643 0.97371 1.23042 1.00902 0.95820 0.88561 1.63619 1.54093 1.01124 1.05218 1.23275 0.95165 0.93435 0.98234 1.19278 0.80307 0.87161 0.95239 0.92959 1.86561 1.29622 1.95894 1.23436 1.21672 1.11304 0.92207 1.36075 0.92846 1.25031 0.94513 0.98752 0.94392 1.70091 1.20583 1.20506 1.38182 0.86688 0.80287 0.82112 0.79352 1.20533 1.21130 1.19946 1.22847 0.98137 0.91315 0.95944 0.91178 0.91315 0.95988 0.90388 0.94941 0.86921 0.89116 0.88948 0.88734 0.88902 0.90384 0.95007 0.91061 0.91227 0.94094 0.90230 0.92151 0.95641 0.81558 0.93041 0.91280 0.93557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.17 60.06 0.55 0.76 16 2 N -0.54 -5.41 4.68 -242.91 -1.14 -6.55 16 3 C 0.09 0.75 5.24 -3.82 -0.02 0.73 16 4 C -0.14 -1.14 4.74 -90.61 -0.43 -1.57 16 5 C -0.19 -1.28 10.18 -26.69 -0.27 -1.55 16 6 C -0.18 -1.22 10.26 -26.69 -0.27 -1.49 16 7 C 0.07 0.74 4.26 -3.82 -0.02 0.72 16 8 C -0.11 -1.35 2.88 -88.80 -0.26 -1.60 16 9 H 0.07 0.93 6.31 -51.93 -0.33 0.61 16 10 C -0.11 -1.50 6.45 -24.60 -0.16 -1.66 16 11 C 0.04 0.78 5.78 -2.30 -0.01 0.77 16 12 N -0.52 -9.72 5.03 -231.24 -1.16 -10.88 16 13 C 0.03 0.57 4.17 -3.83 -0.02 0.56 16 14 C 0.24 6.20 2.82 -27.88 -0.08 6.12 16 15 H 0.05 1.50 7.49 -51.93 -0.39 1.11 16 16 O -0.55 -14.88 12.59 -35.23 -0.44 -15.32 16 17 C -0.57 -16.05 8.76 -34.44 -0.30 -16.35 16 18 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 19 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 20 N -0.86 -25.81 12.83 55.43 0.71 -25.10 16 21 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.05 0.70 6.46 -2.83 -0.02 0.68 16 26 H 0.07 0.69 6.34 -51.93 -0.33 0.36 16 27 H 0.07 0.59 7.16 -51.93 -0.37 0.22 16 28 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.08 0.68 7.93 -51.93 -0.41 0.26 16 30 H 0.03 0.28 7.85 -51.93 -0.41 -0.13 16 31 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.09 0.61 8.03 -51.93 -0.42 0.19 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.85 7.80 -51.93 -0.40 0.44 16 37 H 0.03 0.33 8.12 -51.92 -0.42 -0.09 16 38 H 0.07 0.99 7.95 -51.92 -0.41 0.58 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.04 0.74 7.62 -51.93 -0.40 0.35 16 41 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.06 1.26 8.03 -51.93 -0.42 0.84 16 43 H 0.03 0.54 7.85 -51.93 -0.41 0.13 16 44 H 0.34 8.27 9.04 45.56 0.41 8.68 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.07 1.00 7.82 -51.93 -0.41 0.59 16 47 H 0.05 0.69 7.55 -51.93 -0.39 0.30 16 LS Contribution 368.50 15.07 5.55 5.55 Total: -1.00 -30.56 368.50 -10.90 -41.46 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -8.00 Total: 6.17 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -1.40 Total: -11.72 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: -1.59 Total: -42.53 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.44 Total: -15.32 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.56 -10.90 -41.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929762011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.257 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds