Wall clock time and date at job start Tue Mar 31 2020 05:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 110.99673 * 2 1 4 4 C 1.53001 * 109.46743 * 66.04975 * 3 2 1 5 5 C 1.53006 * 117.49559 * 243.74212 * 4 3 2 6 6 C 1.53008 * 117.49640 * 175.08682 * 4 3 2 7 7 C 1.46904 * 111.00283 * 236.04696 * 2 1 3 8 8 C 1.53000 * 109.47035 * 293.95245 * 7 2 1 9 9 H 1.09003 * 110.62849 * 51.89697 * 8 7 2 10 10 C 1.55135 * 110.85764 * 288.68278 * 8 7 2 11 11 C 1.54901 * 101.65493 * 205.89651 * 10 8 7 12 12 N 1.47847 * 104.79797 * 37.06961 * 11 10 8 13 13 C 1.46896 * 111.00107 * 213.63897 * 12 11 10 14 14 C 1.53001 * 109.47230 * 290.84272 * 13 12 11 15 15 H 1.08998 * 109.47065 * 59.99662 * 14 13 12 16 16 O 1.42908 * 109.46829 * 300.00177 * 14 13 12 17 17 C 1.50697 * 109.46995 * 180.02562 * 14 13 12 18 18 H 1.07991 * 120.00449 * 359.72153 * 17 14 13 19 19 C 1.37885 * 119.99686 * 179.97438 * 17 14 13 20 20 N 1.31516 * 119.99913 * 359.72095 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.72528 * 19 17 14 22 22 H 1.48493 * 109.47326 * 90.00142 * 21 19 17 23 23 H 1.48506 * 109.46545 * 209.99892 * 21 19 17 24 24 H 1.48498 * 109.47210 * 329.99603 * 21 19 17 25 25 C 1.47452 * 108.56480 * 335.90609 * 12 11 10 26 26 H 1.09006 * 109.46533 * 183.95078 * 1 2 3 27 27 H 1.08998 * 109.47237 * 303.94702 * 1 2 3 28 28 H 1.09004 * 109.47268 * 63.95644 * 1 2 3 29 29 H 1.09006 * 109.46731 * 186.04450 * 3 2 1 30 30 H 1.08992 * 109.47184 * 306.04602 * 3 2 1 31 31 H 1.08991 * 115.55632 * 29.41313 * 4 3 2 32 32 H 1.09005 * 117.49464 * 0.02562 * 5 4 3 33 33 H 1.08999 * 117.49618 * 145.01878 * 5 4 3 34 34 H 1.08995 * 117.49548 * 214.97627 * 6 4 3 35 35 H 1.09003 * 117.49575 * 359.97438 * 6 4 3 36 36 H 1.09004 * 109.47186 * 173.95082 * 7 2 1 37 37 H 1.09008 * 109.46776 * 53.95489 * 7 2 1 38 38 H 1.09007 * 110.99002 * 323.98693 * 10 8 7 39 39 H 1.08999 * 110.98760 * 87.76590 * 10 8 7 40 40 H 1.09004 * 110.37585 * 278.24443 * 11 10 8 41 41 H 1.09000 * 110.37678 * 155.90333 * 11 10 8 42 42 H 1.08998 * 109.47372 * 170.84123 * 13 12 11 43 43 H 1.09006 * 109.47513 * 50.84294 * 13 12 11 44 44 H 0.96704 * 113.99704 * 299.99964 * 16 14 13 45 45 H 0.97000 * 119.99651 * 180.02562 * 20 19 17 46 46 H 1.08997 * 109.88783 * 120.39541 * 25 12 11 47 47 H 1.09003 * 109.88436 * 241.42294 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6313 2.0574 1.3183 5 6 0.7035 3.2720 1.2500 6 6 2.1901 3.4607 1.5624 7 6 1.9955 -0.7660 -1.1376 8 6 1.6316 -2.2426 -0.9704 9 1 0.5631 -2.3564 -0.7871 10 6 2.4562 -2.8886 0.1739 11 6 2.4713 -4.3775 -0.2532 12 7 2.5829 -4.3464 -1.7271 13 6 1.8538 -5.4680 -2.3340 14 6 2.5731 -6.7789 -2.0099 15 1 2.6130 -6.9138 -0.9290 16 8 3.9019 -6.7353 -2.5338 17 6 1.8254 -7.9295 -2.6330 18 1 0.9247 -7.7447 -3.1994 19 6 2.2886 -9.2186 -2.4757 20 7 3.3858 -9.4436 -1.7863 21 14 1.3576 -10.6455 -3.2416 22 1 1.8717 -10.8930 -4.6126 23 1 1.5498 -11.8632 -2.4136 24 1 -0.0885 -10.3147 -3.3073 25 6 2.0620 -3.0543 -2.2102 26 1 -0.3632 -1.0253 0.0708 27 1 -0.3633 0.5739 0.8525 28 1 -0.3634 0.4512 -0.9233 29 1 3.0797 1.3444 -0.1082 30 1 1.5610 1.9273 -0.8308 31 1 1.5339 1.3976 2.1804 32 1 0.3521 3.5822 0.2659 33 1 -0.0041 3.4114 2.0673 34 1 2.4599 3.7241 2.5850 35 1 2.8173 3.8950 0.7838 36 1 3.0798 -0.6610 -1.1756 37 1 1.5611 -0.3871 -2.0629 38 1 3.4668 -2.4811 0.2050 39 1 1.9568 -2.7623 1.1345 40 1 1.5451 -4.8677 0.0469 41 1 3.3302 -4.8884 0.1818 42 1 1.8139 -5.3331 -3.4149 43 1 0.8402 -5.5013 -1.9344 44 1 3.9429 -6.6168 -3.4927 45 1 3.7118 -10.3505 -1.6759 46 1 2.8421 -2.5191 -2.7514 47 1 1.2052 -3.2208 -2.8632 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929762011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:35 Heat of formation + Delta-G solvation = -40.990830 kcal Electronic energy + Delta-G solvation = -22510.983046 eV Core-core repulsion = 19307.371435 eV Total energy + Delta-G solvation = -3203.611611 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.43309 -39.14740 -37.62022 -36.62147 -34.22691 -33.18396 -30.49425 -29.77327 -28.58505 -27.34989 -25.89880 -23.34030 -23.20703 -23.04499 -21.43721 -21.15715 -20.84720 -19.02037 -17.41868 -16.89779 -16.66087 -16.34772 -16.20742 -16.01571 -15.89951 -15.41474 -15.06069 -14.63261 -14.51524 -14.24366 -14.02853 -13.59004 -13.42883 -13.24412 -12.97196 -12.80825 -12.67763 -12.58039 -12.51245 -12.34962 -12.30436 -12.04600 -11.97721 -11.86093 -11.70507 -11.43072 -11.11186 -10.96137 -10.80090 -10.70815 -10.06603 -9.25225 -9.07586 -8.12690 -6.39383 1.40173 1.40871 1.51785 2.38486 2.78816 3.01686 3.12289 3.19523 3.70234 3.78954 3.89464 3.95554 4.08057 4.14134 4.29094 4.32938 4.38260 4.40728 4.46600 4.48268 4.51308 4.59409 4.64294 4.74272 4.77074 4.80034 4.81197 4.88441 4.91797 5.02408 5.04917 5.05738 5.12426 5.16010 5.19004 5.27348 5.35333 5.43678 5.60145 5.75775 6.01951 6.11862 6.15624 6.22541 6.29003 6.74664 7.34957 7.63498 8.91826 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.049017 B = 0.002630 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.089128 B =10643.457337 C =10782.376436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.546 5.546 3 C 0.088 3.912 4 C -0.153 4.153 5 C -0.182 4.182 6 C -0.175 4.175 7 C 0.076 3.924 8 C -0.093 4.093 9 H 0.075 0.925 10 C -0.094 4.094 11 C 0.042 3.958 12 N -0.533 5.533 13 C 0.046 3.954 14 C 0.238 3.762 15 H 0.015 0.985 16 O -0.570 6.570 17 C -0.589 4.589 18 H 0.059 0.941 19 C 0.024 3.976 20 N -0.900 5.900 21 Si 0.962 3.038 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.265 1.265 25 C 0.046 3.954 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.026 0.974 29 H 0.077 0.923 30 H 0.036 0.964 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.040 0.960 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.030 0.970 41 H 0.053 0.947 42 H 0.067 0.933 43 H 0.024 0.976 44 H 0.352 0.648 45 H 0.261 0.739 46 H 0.079 0.921 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.818 24.870 3.662 25.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.039 4.039 4 C -0.172 4.172 5 C -0.218 4.218 6 C -0.213 4.213 7 C -0.052 4.052 8 C -0.113 4.113 9 H 0.093 0.907 10 C -0.132 4.132 11 C -0.085 4.085 12 N -0.257 5.257 13 C -0.082 4.082 14 C 0.180 3.820 15 H 0.033 0.967 16 O -0.373 6.373 17 C -0.627 4.627 18 H 0.077 0.923 19 C -0.179 4.179 20 N -0.537 5.537 21 Si 0.787 3.213 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.189 1.189 25 C -0.082 4.082 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.044 0.956 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.048 0.952 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.042 0.958 44 H 0.196 0.804 45 H 0.070 0.930 46 H 0.098 0.902 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.871 24.380 4.649 25.293 hybrid contribution -1.620 -0.741 -1.296 2.203 sum -6.491 23.639 3.353 24.742 Atomic orbital electron populations 1.22411 0.87098 1.02016 1.00770 1.61905 1.08384 1.13563 1.43146 1.21665 0.99944 0.87415 0.94897 1.22218 1.05297 0.90486 0.99153 1.23117 0.93435 1.02096 1.03200 1.23034 0.96512 0.98475 1.03236 1.21987 1.00335 0.91544 0.91339 1.22297 0.99823 0.94526 0.94652 0.90705 1.22508 1.00567 0.91767 0.98319 1.22997 0.99185 0.98217 0.88137 1.63503 1.54396 1.02062 1.05758 1.22862 0.94403 0.92259 0.98695 1.19136 0.80316 0.89525 0.92999 0.96700 1.86503 1.30299 1.96136 1.24390 1.22056 1.11545 0.93190 1.35933 0.92305 1.25941 0.95345 1.01790 0.94789 1.70238 1.22443 1.21210 1.39769 0.85524 0.79135 0.78214 0.78471 1.19662 1.20860 1.18925 1.22901 0.98640 0.89658 0.96999 0.91810 0.90684 0.95593 0.90447 0.94575 0.87921 0.88811 0.88423 0.88162 0.88359 0.90283 0.94178 0.90837 0.90136 0.95155 0.92819 0.91432 0.95814 0.80400 0.92996 0.90230 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.17 127.69 1.17 1.59 16 2 N -0.55 -9.92 4.68 -922.42 -4.32 -14.24 16 3 C 0.09 1.37 5.24 86.30 0.45 1.82 16 4 C -0.15 -2.17 4.74 -10.79 -0.05 -2.22 16 5 C -0.18 -2.15 10.18 30.62 0.31 -1.83 16 6 C -0.18 -2.05 10.26 30.62 0.31 -1.74 16 7 C 0.08 1.47 4.26 86.30 0.37 1.84 16 8 C -0.09 -2.22 2.88 -9.61 -0.03 -2.24 16 9 H 0.07 1.78 6.31 -2.39 -0.02 1.77 16 10 C -0.09 -2.51 6.45 31.98 0.21 -2.31 16 11 C 0.04 1.52 5.78 86.77 0.50 2.02 16 12 N -0.53 -20.03 5.03 -885.51 -4.45 -24.48 16 13 C 0.05 1.98 4.17 86.30 0.36 2.34 16 14 C 0.24 12.72 2.82 29.85 0.08 12.80 16 15 H 0.02 0.91 7.49 -2.39 -0.02 0.89 16 16 O -0.57 -31.36 12.59 -148.98 -1.88 -33.23 16 17 C -0.59 -33.19 8.76 25.60 0.22 -32.97 16 18 H 0.06 3.18 7.74 -2.92 -0.02 3.16 16 19 C 0.02 1.35 5.40 84.66 0.46 1.81 16 20 N -0.90 -55.17 12.83 21.45 0.28 -54.90 16 21 Si 0.96 44.00 29.54 68.60 2.03 46.02 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 25 C 0.05 1.32 6.46 86.64 0.56 1.88 16 26 H 0.06 1.14 6.34 -2.38 -0.02 1.12 16 27 H 0.07 1.15 7.16 -2.39 -0.02 1.13 16 28 H 0.03 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.08 1.20 7.93 -2.38 -0.02 1.18 16 30 H 0.04 0.54 7.85 -2.39 -0.02 0.52 16 31 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.09 1.06 8.03 -2.38 -0.02 1.04 16 33 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.54 7.80 -2.38 -0.02 1.52 16 37 H 0.04 0.73 8.12 -2.38 -0.02 0.71 16 38 H 0.07 1.96 7.95 -2.38 -0.02 1.94 16 39 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.03 1.13 7.62 -2.38 -0.02 1.12 16 41 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.07 2.77 8.03 -2.39 -0.02 2.75 16 43 H 0.02 1.01 7.85 -2.38 -0.02 0.99 16 44 H 0.35 17.27 9.04 -74.05 -0.67 16.60 16 45 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 46 H 0.08 2.13 7.82 -2.39 -0.02 2.11 16 47 H 0.05 1.43 7.55 -2.39 -0.02 1.41 16 Total: -1.00 -65.53 368.50 -3.16 -68.69 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: 0.25 Total: 29.34 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: 4.93 Total: -17.21 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -8.50 Total: -93.61 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -1.88 Total: -33.23 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -65.53 -3.16 -68.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929762011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.699 kcal (2) G-P(sol) polarization free energy of solvation -65.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds