Wall clock time and date at job start Tue Mar 31 2020 05:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 110.99777 * 2 1 4 4 C 1.53004 * 109.47305 * 293.95262 * 3 2 1 5 5 C 1.52994 * 117.50026 * 243.62531 * 4 3 2 6 6 C 1.52993 * 117.50055 * 174.99597 * 4 3 2 7 7 C 1.46895 * 111.00110 * 123.95136 * 2 1 3 8 8 C 1.52999 * 109.47181 * 66.04940 * 7 2 1 9 9 H 1.09006 * 110.64295 * 303.30257 * 8 7 2 10 10 C 1.54605 * 110.72444 * 66.45321 * 8 7 2 11 11 C 1.53994 * 105.13962 * 140.49715 * 10 8 7 12 12 N 1.47904 * 107.05849 * 1.22158 * 11 10 8 13 13 C 1.46902 * 111.00083 * 214.15644 * 12 11 10 14 14 C 1.52998 * 109.46991 * 294.28849 * 13 12 11 15 15 H 1.08998 * 109.47421 * 57.72669 * 14 13 12 16 16 O 1.42903 * 109.46962 * 297.72697 * 14 13 12 17 17 C 1.50703 * 109.46782 * 177.73123 * 14 13 12 18 18 H 1.07997 * 120.00106 * 359.97438 * 17 14 13 19 19 C 1.37885 * 119.99744 * 179.97438 * 17 14 13 20 20 N 1.31514 * 119.99828 * 359.97438 * 19 17 14 21 21 Si 1.86792 * 119.99754 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.47349 * 60.00113 * 21 19 17 23 23 H 1.48502 * 109.47023 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47465 * 299.99699 * 21 19 17 25 25 C 1.48531 * 105.82222 * 334.67256 * 12 11 10 26 26 H 1.08996 * 109.47276 * 296.04265 * 1 2 3 27 27 H 1.09001 * 109.47324 * 56.04806 * 1 2 3 28 28 H 1.09007 * 109.46708 * 176.04263 * 1 2 3 29 29 H 1.08998 * 109.46931 * 53.95492 * 3 2 1 30 30 H 1.08994 * 109.47350 * 173.95398 * 3 2 1 31 31 H 1.09001 * 115.54288 * 29.32747 * 4 3 2 32 32 H 1.09002 * 117.49747 * 359.97438 * 5 4 3 33 33 H 1.08998 * 117.49818 * 145.01943 * 5 4 3 34 34 H 1.08994 * 117.50151 * 214.97838 * 6 4 3 35 35 H 1.09001 * 117.49881 * 0.02562 * 6 4 3 36 36 H 1.08995 * 109.47445 * 306.04857 * 7 2 1 37 37 H 1.09004 * 109.47235 * 186.04452 * 7 2 1 38 38 H 1.08996 * 110.30342 * 21.57729 * 10 8 7 39 39 H 1.08997 * 110.30650 * 259.41131 * 10 8 7 40 40 H 1.09001 * 109.91518 * 241.87186 * 11 10 8 41 41 H 1.09000 * 110.07958 * 120.67205 * 11 10 8 42 42 H 1.08995 * 109.46719 * 54.28437 * 13 12 11 43 43 H 1.08998 * 109.46830 * 174.28617 * 13 12 11 44 44 H 0.96704 * 114.00209 * 300.00353 * 16 14 13 45 45 H 0.97003 * 119.99843 * 180.02562 * 20 19 17 46 46 H 1.08998 * 110.66879 * 157.63763 * 25 12 11 47 47 H 1.08999 * 110.66794 * 280.77335 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 -1.3183 5 6 2.7805 2.4775 -2.2369 6 6 1.9899 3.5374 -1.4671 7 6 1.9955 -0.7659 1.1376 8 6 1.6316 -2.2425 0.9704 9 1 0.5528 -2.3637 0.8716 10 6 2.3643 -2.8521 -0.2469 11 6 2.7822 -4.2649 0.2013 12 7 2.2836 -4.4473 1.5818 13 6 3.2065 -5.2753 2.3697 14 6 3.2365 -6.6931 1.7955 15 1 3.5349 -6.6546 0.7478 16 8 1.9362 -7.2767 1.8993 17 6 4.2248 -7.5274 2.5690 18 1 4.7766 -7.0900 3.3879 19 6 4.4246 -8.8492 2.2312 20 7 3.7523 -9.3819 1.2342 21 14 5.6500 -9.8832 3.1894 22 1 5.2444 -9.9351 4.6171 23 1 5.6791 -11.2594 2.6322 24 1 7.0013 -9.2770 3.0805 25 6 2.1713 -3.0819 2.1556 26 1 -0.3633 0.4512 0.9233 27 1 -0.3634 0.5739 -0.8525 28 1 -0.3633 -1.0253 -0.0709 29 1 1.5610 1.9273 0.8309 30 1 3.0796 1.3445 0.1082 31 1 0.7106 1.7129 -1.7889 32 1 3.7959 2.2655 -1.9019 33 1 2.6159 2.4093 -3.3122 34 1 1.3053 4.1664 -2.0359 35 1 2.4855 4.0222 -0.6259 36 1 1.5611 -0.3872 2.0628 37 1 3.0798 -0.6610 1.1756 38 1 3.2438 -2.2582 -0.4953 39 1 1.6920 -2.9103 -1.1029 40 1 3.8685 -4.3537 0.1841 41 1 2.3383 -5.0126 -0.4558 42 1 4.2070 -4.8449 2.3274 43 1 2.8693 -5.3098 3.4056 44 1 1.6060 -7.3429 2.8058 45 1 3.8925 -10.3119 0.9968 46 1 1.4668 -3.0708 2.9871 47 1 3.1480 -2.7163 2.4725 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929762012.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:38 Heat of formation + Delta-G solvation = -18.256487 kcal Electronic energy + Delta-G solvation = -22525.766976 eV Core-core repulsion = 19323.141200 eV Total energy + Delta-G solvation = -3202.625776 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.27134 -38.19350 -36.35515 -35.21273 -32.09029 -31.83901 -29.18365 -28.05156 -27.76472 -26.16516 -24.23174 -22.69093 -22.38934 -21.42503 -20.44800 -20.19031 -19.12135 -16.92310 -16.55033 -16.06432 -15.35345 -15.11664 -14.91686 -14.56069 -14.21292 -14.16095 -13.82555 -13.42572 -13.38046 -12.95951 -12.76173 -12.43493 -12.01364 -11.96240 -11.79057 -11.74130 -11.51626 -11.30109 -10.96437 -10.88249 -10.83509 -10.75052 -10.65983 -10.48040 -10.36519 -10.21910 -10.15003 -10.00122 -8.93198 -8.52814 -8.45976 -8.03070 -7.66743 -5.96122 -4.14631 3.30893 3.36173 3.37682 3.40436 3.77247 4.38125 4.43029 4.56243 4.64183 4.72188 4.94207 4.97168 5.03300 5.08141 5.17731 5.27256 5.31208 5.33417 5.41290 5.43653 5.50732 5.59922 5.61581 5.64031 5.71374 5.81689 5.82270 5.93371 5.99226 6.07536 6.13336 6.21226 6.25908 6.43060 6.48289 6.62970 6.67487 6.86403 6.88396 6.91286 7.50238 7.68089 7.81005 7.92253 8.25401 8.89295 9.50953 9.67750 11.07959 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039158 B = 0.002705 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.880542 B =10348.248969 C =10507.210345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.536 5.536 3 C 0.086 3.914 4 C -0.146 4.146 5 C -0.174 4.174 6 C -0.185 4.185 7 C 0.066 3.934 8 C -0.086 4.086 9 H 0.081 0.919 10 C -0.108 4.108 11 C 0.037 3.963 12 N -0.505 5.505 13 C 0.023 3.977 14 C 0.238 3.762 15 H 0.054 0.946 16 O -0.555 6.555 17 C -0.575 4.575 18 H 0.053 0.947 19 C 0.079 3.921 20 N -0.858 5.858 21 Si 0.889 3.111 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.277 1.277 25 C 0.038 3.962 26 H 0.023 0.977 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.035 0.965 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.040 0.960 41 H 0.078 0.922 42 H 0.027 0.973 43 H 0.062 0.938 44 H 0.342 0.658 45 H 0.261 0.739 46 H 0.073 0.927 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.566 23.212 -3.074 23.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.259 5.259 3 C -0.042 4.042 4 C -0.164 4.164 5 C -0.211 4.211 6 C -0.222 4.222 7 C -0.062 4.062 8 C -0.105 4.105 9 H 0.099 0.901 10 C -0.147 4.147 11 C -0.091 4.091 12 N -0.228 5.228 13 C -0.105 4.105 14 C 0.180 3.820 15 H 0.072 0.928 16 O -0.356 6.356 17 C -0.613 4.613 18 H 0.071 0.929 19 C -0.127 4.127 20 N -0.494 5.494 21 Si 0.716 3.284 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.203 1.203 25 C -0.091 4.091 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.126 0.874 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.096 0.904 42 H 0.045 0.955 43 H 0.080 0.920 44 H 0.185 0.815 45 H 0.070 0.930 46 H 0.091 0.909 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.866 22.498 -4.280 23.413 hybrid contribution 1.333 0.230 1.910 2.340 sum -3.533 22.728 -2.370 23.123 Atomic orbital electron populations 1.22480 0.87502 1.02649 1.00176 1.61897 1.07940 1.12667 1.43407 1.21671 0.99807 0.88116 0.94642 1.22295 1.00155 0.95865 0.98112 1.22991 0.96663 1.03286 0.98163 1.22976 1.04173 0.91785 1.03311 1.22145 0.99850 0.93465 0.90780 1.22064 1.00741 0.92144 0.95588 0.90086 1.22289 0.99819 0.95029 0.97519 1.22858 0.98140 0.96536 0.91579 1.64797 1.47053 1.09267 1.01708 1.23234 0.92243 0.97729 0.97299 1.19295 0.81872 0.84442 0.96431 0.92842 1.86561 1.34808 1.84711 1.29546 1.21635 1.25073 0.96561 1.18076 0.92862 1.25029 0.95147 0.97901 0.94594 1.70077 1.39182 1.13298 1.26823 0.86740 0.81797 0.79428 0.80396 1.20157 1.21190 1.20251 1.23211 0.99096 0.89995 0.96808 0.95837 0.91446 0.90758 0.94684 0.90786 0.87375 0.88798 0.88910 0.88892 0.88981 0.94874 0.90889 0.91850 0.91456 0.94188 0.90372 0.95495 0.91994 0.81507 0.92963 0.90864 0.94553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.16 60.06 0.55 0.73 16 2 N -0.54 -5.44 4.57 -242.92 -1.11 -6.55 16 3 C 0.09 0.75 5.24 -3.82 -0.02 0.73 16 4 C -0.15 -1.18 5.68 -90.62 -0.51 -1.70 16 5 C -0.17 -1.33 10.18 -26.73 -0.27 -1.60 16 6 C -0.18 -1.28 10.25 -26.73 -0.27 -1.55 16 7 C 0.07 0.71 4.30 -3.83 -0.02 0.69 16 8 C -0.09 -1.11 2.93 -88.75 -0.26 -1.37 16 9 H 0.08 1.07 6.49 -51.93 -0.34 0.73 16 10 C -0.11 -1.53 6.33 -25.37 -0.16 -1.69 16 11 C 0.04 0.66 5.55 -2.75 -0.02 0.65 16 12 N -0.50 -9.53 5.20 -230.45 -1.20 -10.73 16 13 C 0.02 0.49 4.33 -3.82 -0.02 0.47 16 14 C 0.24 6.18 2.79 -27.88 -0.08 6.11 16 15 H 0.05 1.53 7.30 -51.93 -0.38 1.15 16 16 O -0.55 -14.90 12.63 -35.23 -0.45 -15.35 16 17 C -0.57 -16.07 8.76 -34.44 -0.30 -16.37 16 18 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 19 C 0.08 2.26 5.40 -17.82 -0.10 2.17 16 20 N -0.86 -25.82 12.84 55.43 0.71 -25.11 16 21 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.04 0.57 6.01 -1.90 -0.01 0.56 16 26 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 27 H 0.07 0.55 6.22 -51.93 -0.32 0.23 16 28 H 0.07 0.72 6.43 -51.93 -0.33 0.39 16 29 H 0.04 0.30 8.12 -51.93 -0.42 -0.12 16 30 H 0.07 0.65 7.66 -51.93 -0.40 0.26 16 31 H 0.11 0.90 6.36 -51.93 -0.33 0.57 16 32 H 0.09 0.71 8.03 -51.93 -0.42 0.30 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 37 H 0.07 0.79 7.86 -51.93 -0.41 0.39 16 38 H 0.06 0.86 7.80 -51.93 -0.41 0.46 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.04 0.74 7.64 -51.93 -0.40 0.35 16 41 H 0.08 1.53 8.13 -51.93 -0.42 1.11 16 42 H 0.03 0.57 7.94 -51.93 -0.41 0.16 16 43 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.34 8.26 9.04 45.56 0.41 8.67 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 46 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.04 0.54 7.93 -51.93 -0.41 0.12 16 LS Contribution 367.12 15.07 5.53 5.53 Total: -1.00 -30.66 367.12 -10.93 -41.58 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -7.91 Total: 6.40 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -1.49 Total: -12.18 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: -1.60 Total: -42.39 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.45 Total: -15.35 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.66 -10.93 -41.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929762012.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.326 kcal (2) G-P(sol) polarization free energy of solvation -30.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds