Wall clock time and date at job start Tue Mar 31 2020 05:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 110.99777 * 2 1 4 4 C 1.53004 * 109.47305 * 293.95262 * 3 2 1 5 5 C 1.52994 * 117.50026 * 243.62531 * 4 3 2 6 6 C 1.52993 * 117.50055 * 174.99597 * 4 3 2 7 7 C 1.46895 * 111.00110 * 123.95136 * 2 1 3 8 8 C 1.52999 * 109.47181 * 66.04940 * 7 2 1 9 9 H 1.09006 * 110.64295 * 303.30257 * 8 7 2 10 10 C 1.54605 * 110.72444 * 66.45321 * 8 7 2 11 11 C 1.53994 * 105.13962 * 140.49715 * 10 8 7 12 12 N 1.47904 * 107.05849 * 1.22158 * 11 10 8 13 13 C 1.46902 * 111.00083 * 214.15644 * 12 11 10 14 14 C 1.52998 * 109.46991 * 294.28849 * 13 12 11 15 15 H 1.08998 * 109.47421 * 57.72669 * 14 13 12 16 16 O 1.42903 * 109.46962 * 297.72697 * 14 13 12 17 17 C 1.50703 * 109.46782 * 177.73123 * 14 13 12 18 18 H 1.07997 * 120.00106 * 359.97438 * 17 14 13 19 19 C 1.37885 * 119.99744 * 179.97438 * 17 14 13 20 20 N 1.31514 * 119.99828 * 359.97438 * 19 17 14 21 21 Si 1.86792 * 119.99754 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.47349 * 60.00113 * 21 19 17 23 23 H 1.48502 * 109.47023 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47465 * 299.99699 * 21 19 17 25 25 C 1.48531 * 105.82222 * 334.67256 * 12 11 10 26 26 H 1.08996 * 109.47276 * 296.04265 * 1 2 3 27 27 H 1.09001 * 109.47324 * 56.04806 * 1 2 3 28 28 H 1.09007 * 109.46708 * 176.04263 * 1 2 3 29 29 H 1.08998 * 109.46931 * 53.95492 * 3 2 1 30 30 H 1.08994 * 109.47350 * 173.95398 * 3 2 1 31 31 H 1.09001 * 115.54288 * 29.32747 * 4 3 2 32 32 H 1.09002 * 117.49747 * 359.97438 * 5 4 3 33 33 H 1.08998 * 117.49818 * 145.01943 * 5 4 3 34 34 H 1.08994 * 117.50151 * 214.97838 * 6 4 3 35 35 H 1.09001 * 117.49881 * 0.02562 * 6 4 3 36 36 H 1.08995 * 109.47445 * 306.04857 * 7 2 1 37 37 H 1.09004 * 109.47235 * 186.04452 * 7 2 1 38 38 H 1.08996 * 110.30342 * 21.57729 * 10 8 7 39 39 H 1.08997 * 110.30650 * 259.41131 * 10 8 7 40 40 H 1.09001 * 109.91518 * 241.87186 * 11 10 8 41 41 H 1.09000 * 110.07958 * 120.67205 * 11 10 8 42 42 H 1.08995 * 109.46719 * 54.28437 * 13 12 11 43 43 H 1.08998 * 109.46830 * 174.28617 * 13 12 11 44 44 H 0.96704 * 114.00209 * 300.00353 * 16 14 13 45 45 H 0.97003 * 119.99843 * 180.02562 * 20 19 17 46 46 H 1.08998 * 110.66879 * 157.63763 * 25 12 11 47 47 H 1.08999 * 110.66794 * 280.77335 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 -1.3183 5 6 2.7805 2.4775 -2.2369 6 6 1.9899 3.5374 -1.4671 7 6 1.9955 -0.7659 1.1376 8 6 1.6316 -2.2425 0.9704 9 1 0.5528 -2.3637 0.8716 10 6 2.3643 -2.8521 -0.2469 11 6 2.7822 -4.2649 0.2013 12 7 2.2836 -4.4473 1.5818 13 6 3.2065 -5.2753 2.3697 14 6 3.2365 -6.6931 1.7955 15 1 3.5349 -6.6546 0.7478 16 8 1.9362 -7.2767 1.8993 17 6 4.2248 -7.5274 2.5690 18 1 4.7766 -7.0900 3.3879 19 6 4.4246 -8.8492 2.2312 20 7 3.7523 -9.3819 1.2342 21 14 5.6500 -9.8832 3.1894 22 1 5.2444 -9.9351 4.6171 23 1 5.6791 -11.2594 2.6322 24 1 7.0013 -9.2770 3.0805 25 6 2.1713 -3.0819 2.1556 26 1 -0.3633 0.4512 0.9233 27 1 -0.3634 0.5739 -0.8525 28 1 -0.3633 -1.0253 -0.0709 29 1 1.5610 1.9273 0.8309 30 1 3.0796 1.3445 0.1082 31 1 0.7106 1.7129 -1.7889 32 1 3.7959 2.2655 -1.9019 33 1 2.6159 2.4093 -3.3122 34 1 1.3053 4.1664 -2.0359 35 1 2.4855 4.0222 -0.6259 36 1 1.5611 -0.3872 2.0628 37 1 3.0798 -0.6610 1.1756 38 1 3.2438 -2.2582 -0.4953 39 1 1.6920 -2.9103 -1.1029 40 1 3.8685 -4.3537 0.1841 41 1 2.3383 -5.0126 -0.4558 42 1 4.2070 -4.8449 2.3274 43 1 2.8693 -5.3098 3.4056 44 1 1.6060 -7.3429 2.8058 45 1 3.8925 -10.3119 0.9968 46 1 1.4668 -3.0708 2.9871 47 1 3.1480 -2.7163 2.4725 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929762012.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:37 Heat of formation + Delta-G solvation = -40.248349 kcal Electronic energy + Delta-G solvation = -22526.720615 eV Core-core repulsion = 19323.141200 eV Total energy + Delta-G solvation = -3203.579414 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.40479 -39.12426 -37.64353 -36.65377 -34.23578 -33.26647 -30.45783 -29.78384 -28.47824 -27.44510 -25.89236 -23.44590 -23.18709 -23.08112 -21.62959 -21.05810 -20.43433 -19.03270 -17.43366 -17.02456 -16.66620 -16.45687 -16.16146 -16.06670 -15.95146 -15.31408 -15.14170 -14.76899 -14.46674 -14.20929 -14.01996 -13.57014 -13.41312 -13.19693 -12.98103 -12.78592 -12.70342 -12.62618 -12.50976 -12.33390 -12.21878 -12.08677 -12.02311 -11.71496 -11.67336 -11.34438 -11.12122 -11.00145 -10.83797 -10.69726 -10.08193 -9.22845 -9.19113 -8.13062 -6.39866 1.40076 1.42294 1.50504 2.38350 2.73668 3.06699 3.12346 3.21259 3.78561 3.82081 3.86160 3.93815 4.05849 4.18032 4.27359 4.33696 4.35843 4.43738 4.45922 4.48868 4.52244 4.61079 4.67230 4.71353 4.76788 4.80859 4.83024 4.84551 4.85908 5.01579 5.05175 5.07142 5.07855 5.16520 5.26273 5.28881 5.35875 5.43503 5.59319 5.75238 5.98871 6.11076 6.13692 6.18456 6.24088 6.73802 7.34368 7.62050 8.91363 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039158 B = 0.002705 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.880542 B =10348.248969 C =10507.210345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.547 5.547 3 C 0.088 3.912 4 C -0.155 4.155 5 C -0.181 4.181 6 C -0.174 4.174 7 C 0.074 3.926 8 C -0.074 4.074 9 H 0.081 0.919 10 C -0.096 4.096 11 C 0.037 3.963 12 N -0.521 5.521 13 C 0.042 3.958 14 C 0.237 3.763 15 H 0.016 0.984 16 O -0.572 6.572 17 C -0.590 4.590 18 H 0.060 0.940 19 C 0.024 3.976 20 N -0.900 5.900 21 Si 0.962 3.038 22 H -0.265 1.265 23 H -0.284 1.284 24 H -0.268 1.268 25 C 0.039 3.961 26 H 0.029 0.971 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.026 0.974 41 H 0.050 0.950 42 H 0.026 0.974 43 H 0.070 0.930 44 H 0.353 0.647 45 H 0.261 0.739 46 H 0.084 0.916 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.317 24.979 -1.994 25.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.270 5.270 3 C -0.039 4.039 4 C -0.173 4.173 5 C -0.218 4.218 6 C -0.212 4.212 7 C -0.055 4.055 8 C -0.093 4.093 9 H 0.099 0.901 10 C -0.134 4.134 11 C -0.091 4.091 12 N -0.245 5.245 13 C -0.087 4.087 14 C 0.180 3.820 15 H 0.034 0.966 16 O -0.375 6.375 17 C -0.628 4.628 18 H 0.078 0.922 19 C -0.179 4.179 20 N -0.537 5.537 21 Si 0.787 3.213 22 H -0.190 1.190 23 H -0.210 1.210 24 H -0.193 1.193 25 C -0.089 4.089 26 H 0.047 0.953 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.061 0.939 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.045 0.955 41 H 0.068 0.932 42 H 0.044 0.956 43 H 0.088 0.912 44 H 0.197 0.803 45 H 0.070 0.930 46 H 0.102 0.898 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.620 24.294 -3.188 24.934 hybrid contribution 1.211 -0.295 1.529 1.973 sum -3.409 23.998 -1.659 24.296 Atomic orbital electron populations 1.22478 0.86965 1.02376 1.00874 1.61872 1.08532 1.13529 1.43104 1.21661 0.99707 0.87384 0.95173 1.22275 1.00188 0.96884 0.97950 1.23045 0.96541 1.03899 0.98336 1.23039 1.03713 0.91215 1.03223 1.22007 1.00036 0.91853 0.91556 1.21970 1.00375 0.93333 0.93646 0.90099 1.22186 1.00387 0.92629 0.98186 1.22803 0.97060 0.98228 0.91011 1.64692 1.46219 1.11601 1.01986 1.22827 0.92903 0.95418 0.97527 1.19153 0.81254 0.87155 0.94486 0.96582 1.86504 1.35159 1.85241 1.30575 1.22031 1.25396 0.97192 1.18211 0.92229 1.25945 0.97057 0.99350 0.95510 1.70229 1.41132 1.13665 1.28660 0.85575 0.79279 0.77383 0.79098 1.19017 1.20979 1.19336 1.23288 0.99950 0.87920 0.97788 0.95287 0.90592 0.91530 0.94212 0.90868 0.87692 0.88922 0.88724 0.88009 0.88361 0.93854 0.90738 0.90903 0.91121 0.95510 0.93165 0.95620 0.91180 0.80323 0.92980 0.89790 0.93786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.16 127.69 1.17 1.51 16 2 N -0.55 -9.97 4.57 -922.46 -4.22 -14.19 16 3 C 0.09 1.37 5.24 86.30 0.45 1.82 16 4 C -0.15 -2.23 5.68 -10.80 -0.06 -2.29 16 5 C -0.18 -2.49 10.18 30.59 0.31 -2.18 16 6 C -0.17 -2.05 10.25 30.59 0.31 -1.73 16 7 C 0.07 1.41 4.30 86.30 0.37 1.79 16 8 C -0.07 -1.78 2.93 -9.58 -0.03 -1.81 16 9 H 0.08 1.99 6.49 -2.38 -0.02 1.97 16 10 C -0.10 -2.64 6.33 31.48 0.20 -2.44 16 11 C 0.04 1.36 5.55 86.45 0.48 1.84 16 12 N -0.52 -19.66 5.20 -883.02 -4.59 -24.25 16 13 C 0.04 1.79 4.33 86.30 0.37 2.16 16 14 C 0.24 12.68 2.79 29.85 0.08 12.76 16 15 H 0.02 0.98 7.30 -2.39 -0.02 0.96 16 16 O -0.57 -31.46 12.63 -148.98 -1.88 -33.34 16 17 C -0.59 -33.23 8.76 25.60 0.22 -33.01 16 18 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 19 C 0.02 1.36 5.40 84.66 0.46 1.82 16 20 N -0.90 -55.25 12.84 21.45 0.28 -54.97 16 21 Si 0.96 43.96 29.54 68.60 2.03 45.98 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 C 0.04 1.10 6.01 86.65 0.52 1.62 16 26 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.08 1.10 6.22 -2.39 -0.01 1.09 16 28 H 0.07 1.19 6.43 -2.38 -0.02 1.17 16 29 H 0.04 0.58 8.12 -2.39 -0.02 0.57 16 30 H 0.07 1.15 7.66 -2.39 -0.02 1.13 16 31 H 0.11 1.58 6.36 -2.39 -0.02 1.56 16 32 H 0.09 1.28 8.03 -2.39 -0.02 1.26 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.10 1.01 8.14 -2.39 -0.02 1.00 16 35 H 0.10 1.03 8.14 -2.39 -0.02 1.02 16 36 H 0.04 0.77 8.12 -2.39 -0.02 0.75 16 37 H 0.07 1.43 7.86 -2.38 -0.02 1.42 16 38 H 0.07 1.88 7.80 -2.39 -0.02 1.87 16 39 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.03 1.03 7.64 -2.39 -0.02 1.01 16 41 H 0.05 2.08 8.13 -2.39 -0.02 2.06 16 42 H 0.03 1.09 7.94 -2.39 -0.02 1.07 16 43 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 44 H 0.35 17.26 9.04 -74.05 -0.67 16.59 16 45 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 46 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.04 1.20 7.93 -2.39 -0.02 1.18 16 Total: -1.00 -65.86 367.12 -3.27 -69.14 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: 0.25 Total: 29.76 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 4.87 Total: -18.13 kcal Atomic # 7 Polarization: -84.87 SS G_CDS: -8.54 Total: -93.41 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -1.88 Total: -33.34 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -65.86 -3.27 -69.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929762012.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.887 kcal (2) G-P(sol) polarization free energy of solvation -65.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds