Wall clock time and date at job start Tue Mar 31 2020 05:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46853 * 110.99900 * 2 1 4 4 C 1.53056 * 109.51186 * 174.13206 * 3 2 1 5 5 C 1.53034 * 109.26687 * 59.08821 * 4 3 2 6 6 C 1.53036 * 109.55863 * 182.42126 * 5 4 3 7 7 C 1.53138 * 109.15268 * 182.33490 * 6 5 4 8 8 C 1.53040 * 109.27502 * 57.54996 * 7 6 5 9 9 N 1.46853 * 109.55211 * 300.80879 * 8 7 6 10 10 C 1.46893 * 111.00302 * 185.85054 * 9 8 7 11 11 C 1.52997 * 109.47539 * 169.69644 * 10 9 8 12 12 H 1.08999 * 109.46960 * 60.24111 * 11 10 9 13 13 O 1.42904 * 109.47047 * 300.24125 * 11 10 9 14 14 C 1.50702 * 109.47327 * 180.24053 * 11 10 9 15 15 H 1.07993 * 119.99836 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99973 * 180.02562 * 14 11 10 17 17 N 1.31519 * 120.00008 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99871 * 180.02562 * 16 14 11 19 19 H 1.48491 * 109.47327 * 59.99505 * 18 16 14 20 20 H 1.48498 * 109.46747 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46852 * 299.99137 * 18 16 14 22 22 C 1.46866 * 111.17627 * 61.76666 * 9 8 7 23 23 C 1.53059 * 109.28123 * 302.40300 * 5 4 3 24 24 C 1.46841 * 111.00150 * 235.73339 * 2 1 3 25 25 H 1.09001 * 109.46902 * 60.00318 * 1 2 3 26 26 H 1.08996 * 109.46993 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46973 * 300.00134 * 1 2 3 28 28 H 1.08992 * 109.46433 * 54.11457 * 3 2 1 29 29 H 1.08996 * 109.45333 * 294.13429 * 3 2 1 30 30 H 1.09001 * 109.50348 * 299.14747 * 4 3 2 31 31 H 1.09005 * 109.53632 * 179.04593 * 4 3 2 32 32 H 1.09002 * 109.51814 * 302.23127 * 6 5 4 33 33 H 1.08990 * 109.52750 * 62.36030 * 6 5 4 34 34 H 1.09000 * 109.50413 * 177.48957 * 7 6 5 35 35 H 1.09001 * 109.50233 * 297.61200 * 7 6 5 36 36 H 1.09000 * 109.45603 * 180.78691 * 8 7 6 37 37 H 1.09002 * 109.45605 * 60.83557 * 8 7 6 38 38 H 1.09001 * 109.46878 * 49.69406 * 10 9 8 39 39 H 1.09002 * 109.47430 * 289.70254 * 10 9 8 40 40 H 0.96697 * 113.99757 * 300.00006 * 13 11 10 41 41 H 0.97001 * 119.99950 * 180.02562 * 17 16 14 42 42 H 1.08993 * 109.46514 * 58.34751 * 22 9 8 43 43 H 1.09008 * 109.45901 * 178.32915 * 22 9 8 44 44 H 1.08999 * 109.50254 * 177.53702 * 23 5 4 45 45 H 1.08995 * 109.51069 * 297.66198 * 23 5 4 46 46 H 1.09001 * 109.46563 * 305.88522 * 24 2 1 47 47 H 1.08993 * 109.46385 * 65.86183 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5182 1.3340 0.1475 5 6 4.1185 0.5349 -1.0114 6 6 5.6362 0.4424 -0.8380 7 6 6.2335 -0.3081 -2.0318 8 6 5.8542 0.4168 -3.3253 9 7 4.3918 0.4766 -3.4444 10 6 3.9918 1.0421 -4.7398 11 6 2.4861 0.8540 -4.9354 12 1 1.9492 1.3672 -4.1376 13 8 2.1717 -0.5396 -4.9013 14 6 2.0768 1.4289 -6.2670 15 1 2.8166 1.8826 -6.9096 16 6 0.7577 1.3756 -6.6647 17 7 -0.1433 0.8227 -5.8823 18 14 0.2505 2.0876 -8.3156 19 1 0.9814 1.3876 -9.4022 20 1 -1.2110 1.9051 -8.5053 21 1 0.5778 3.5356 -8.3517 22 6 3.7995 1.2339 -2.3342 23 6 3.5182 -0.8730 -1.0191 24 6 1.9952 -0.7719 -1.1329 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.5630 1.9259 0.8326 29 1 1.7330 1.8605 -0.9379 30 1 3.7809 0.8581 1.0923 31 1 3.9109 2.3507 0.1305 32 1 6.0591 1.4459 -0.7900 33 1 5.8657 -0.0940 0.0825 34 1 7.3189 -0.3385 -1.9365 35 1 5.8410 -1.3247 -2.0559 36 1 6.2662 -0.1229 -4.1780 37 1 6.2587 1.4288 -3.3064 38 1 4.5286 0.5324 -5.5400 39 1 4.2311 2.1053 -4.7617 40 1 2.6154 -1.0597 -5.5852 41 1 -1.0712 0.7849 -6.1623 42 1 4.2129 2.2423 -2.3210 43 1 2.7187 1.2861 -2.4659 44 1 3.9104 -1.4312 -1.8691 45 1 3.7808 -1.3857 -0.0938 46 1 1.5630 -1.7725 -1.1228 47 1 1.7331 -0.2725 -2.0656 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930310694.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:07 Heat of formation + Delta-G solvation = -52.502847 kcal Electronic energy + Delta-G solvation = -24768.962716 eV Core-core repulsion = 21564.851907 eV Total energy + Delta-G solvation = -3204.110809 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.17880 -37.28292 -35.64931 -33.53407 -32.07624 -31.80941 -30.46753 -28.16339 -27.85371 -25.25643 -24.71125 -23.18937 -22.90926 -21.67922 -20.14736 -19.98036 -17.76505 -17.03275 -15.78422 -15.11527 -14.81603 -14.61842 -14.57963 -14.28398 -14.18955 -14.12384 -13.79433 -13.41647 -13.17940 -12.60967 -12.49571 -12.32850 -12.12132 -12.05800 -11.76353 -11.31137 -11.12975 -11.11077 -10.91838 -10.84736 -10.83373 -10.71853 -10.54777 -10.41922 -10.09992 -9.84937 -9.73270 -9.68618 -8.94122 -8.55663 -8.06999 -7.90823 -7.55025 -6.00524 -4.18448 3.27790 3.33307 3.34917 4.29056 4.33355 4.51082 4.87854 4.98269 5.05078 5.27096 5.31136 5.35685 5.49633 5.52762 5.61842 5.71691 5.76172 5.82823 5.85108 5.92804 5.94405 5.98239 6.03125 6.06974 6.14473 6.15786 6.19852 6.21935 6.26448 6.28719 6.42534 6.44088 6.53167 6.55485 6.62446 6.75872 6.83969 6.85724 7.40995 7.46682 7.61534 7.70949 7.80295 7.90591 8.21779 8.85194 9.47104 9.63669 11.03295 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016869 B = 0.006125 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.415235 B = 4570.375878 C = 5666.050518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.053 3.947 4 C -0.103 4.103 5 C -0.054 4.054 6 C -0.107 4.107 7 C -0.115 4.115 8 C 0.054 3.946 9 N -0.521 5.521 10 C 0.030 3.970 11 C 0.242 3.758 12 H 0.050 0.950 13 O -0.552 6.552 14 C -0.575 4.575 15 H 0.053 0.947 16 C 0.081 3.919 17 N -0.858 5.858 18 Si 0.887 3.113 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.277 1.277 22 C 0.065 3.935 23 C -0.089 4.089 24 C 0.052 3.948 25 H 0.030 0.970 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.038 0.962 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.021 0.979 38 H 0.062 0.938 39 H 0.022 0.978 40 H 0.342 0.658 41 H 0.260 0.740 42 H 0.018 0.982 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.053 0.947 46 H 0.066 0.934 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.336 -1.104 11.261 14.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.270 5.270 3 C -0.075 4.075 4 C -0.141 4.141 5 C -0.054 4.054 6 C -0.145 4.145 7 C -0.153 4.153 8 C -0.075 4.075 9 N -0.245 5.245 10 C -0.097 4.097 11 C 0.184 3.816 12 H 0.067 0.933 13 O -0.354 6.354 14 C -0.614 4.614 15 H 0.071 0.929 16 C -0.125 4.125 17 N -0.494 5.494 18 Si 0.715 3.285 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.203 1.203 22 C -0.063 4.063 23 C -0.126 4.126 24 C -0.075 4.075 25 H 0.048 0.952 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.039 0.961 38 H 0.081 0.919 39 H 0.040 0.960 40 H 0.185 0.815 41 H 0.070 0.930 42 H 0.037 0.963 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.743 -1.661 12.250 14.587 hybrid contribution 0.048 1.700 -2.298 2.859 sum 7.791 0.039 9.952 12.639 Atomic orbital electron populations 1.22310 0.87835 1.01832 1.00384 1.62025 1.07237 1.13278 1.44422 1.22081 0.95288 0.89801 1.00338 1.21595 0.94549 0.99531 0.98470 1.20559 0.94354 0.96427 0.94080 1.21594 0.94999 0.99887 0.97971 1.21600 0.99040 1.00405 0.94275 1.22075 0.89601 0.98075 0.97715 1.61908 1.06806 1.53233 1.02511 1.23070 1.01792 0.96043 0.88836 1.19231 0.85918 0.80780 0.95708 0.93272 1.86541 1.72531 1.20322 1.55958 1.21639 0.93823 1.41357 1.04556 0.92920 1.24997 0.96588 0.94146 0.96760 1.70065 1.01765 1.41419 1.36108 0.86766 0.77501 0.79649 0.84616 1.20146 1.21197 1.20285 1.22201 1.00967 0.93202 0.89907 1.21469 0.94173 0.95487 1.01514 1.22142 0.95348 0.97807 0.92196 0.95174 0.91675 0.92134 0.91531 0.94421 0.91326 0.92140 0.92791 0.92188 0.92416 0.90870 0.91435 0.96118 0.91936 0.95957 0.81514 0.93023 0.96346 0.89674 0.89845 0.92857 0.91584 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.59 60.06 0.58 0.93 16 2 N -0.54 -8.34 4.91 -242.95 -1.19 -9.53 16 3 C 0.05 0.77 5.22 -3.82 -0.02 0.75 16 4 C -0.10 -1.36 4.89 -26.68 -0.13 -1.49 16 5 C -0.05 -0.77 0.51 -154.46 -0.08 -0.85 16 6 C -0.11 -1.33 4.79 -26.64 -0.13 -1.46 16 7 C -0.12 -1.46 5.74 -26.64 -0.15 -1.61 16 8 C 0.05 0.80 5.46 -3.83 -0.02 0.78 16 9 N -0.52 -9.24 3.77 -234.70 -0.88 -10.13 16 10 C 0.03 0.62 4.56 -3.83 -0.02 0.60 16 11 C 0.24 6.01 2.70 -27.88 -0.08 5.93 16 12 H 0.05 1.36 6.45 -51.93 -0.34 1.03 16 13 O -0.55 -13.95 12.59 -35.23 -0.44 -14.39 16 14 C -0.58 -15.69 8.76 -34.44 -0.30 -15.99 16 15 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 16 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 17 N -0.86 -25.10 12.84 55.43 0.71 -24.39 16 18 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.07 1.12 3.43 -3.86 -0.01 1.11 16 23 C -0.09 -1.34 4.40 -26.67 -0.12 -1.46 16 24 C 0.05 0.88 5.22 -3.83 -0.02 0.86 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.86 8.12 -51.93 -0.42 0.43 16 29 H 0.04 0.62 6.54 -51.93 -0.34 0.28 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.96 6.65 -51.93 -0.35 0.62 16 36 H 0.07 0.98 8.01 -51.93 -0.42 0.56 16 37 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 1.26 7.98 -51.93 -0.41 0.85 16 39 H 0.02 0.47 8.12 -51.93 -0.42 0.05 16 40 H 0.34 7.90 9.04 45.56 0.41 8.31 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.09 1.72 3.02 -51.92 -0.16 1.56 16 44 H 0.08 1.37 6.08 -51.93 -0.32 1.05 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 47 H 0.06 1.23 6.50 -51.93 -0.34 0.90 16 LS Contribution 345.81 15.07 5.21 5.21 Total: -1.00 -28.85 345.81 -9.92 -38.77 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -7.70 Total: 8.07 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -0.60 Total: -9.73 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: -1.36 Total: -44.05 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.44 Total: -14.39 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.85 -9.92 -38.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930310694.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.732 kcal (2) G-P(sol) polarization free energy of solvation -28.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds