Wall clock time and date at job start Tue Mar 31 2020 05:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46975 * 110.99491 * 2 1 4 4 C 1.53053 * 109.36173 * 176.86088 * 3 2 1 5 5 N 1.46950 * 109.40186 * 58.36399 * 4 3 2 6 6 C 1.46894 * 110.99842 * 176.84751 * 5 4 3 7 7 C 1.53009 * 109.47087 * 294.06866 * 6 5 4 8 8 H 1.09006 * 109.46638 * 59.55125 * 7 6 5 9 9 O 1.42892 * 109.47090 * 299.55755 * 7 6 5 10 10 C 1.50692 * 109.47295 * 179.55105 * 7 6 5 11 11 H 1.08003 * 120.00131 * 0.02562 * 10 7 6 12 12 C 1.37884 * 120.00056 * 179.97438 * 10 7 6 13 13 N 1.31510 * 119.99814 * 180.02562 * 12 10 7 14 14 Si 1.86796 * 119.99795 * 0.02562 * 12 10 7 15 15 H 1.48499 * 109.47277 * 89.99798 * 14 12 10 16 16 H 1.48498 * 109.46942 * 210.00006 * 14 12 10 17 17 H 1.48497 * 109.47163 * 329.99626 * 14 12 10 18 18 C 1.46969 * 110.87231 * 300.70297 * 5 4 3 19 19 C 1.46926 * 111.00132 * 236.23962 * 2 1 3 20 20 C 1.52968 * 109.52910 * 303.21362 * 19 2 1 21 21 C 1.53006 * 109.46559 * 180.02562 * 20 19 2 22 22 C 1.53001 * 109.47217 * 300.03730 * 21 20 19 23 23 C 1.53004 * 109.49245 * 59.97855 * 22 21 20 24 24 C 1.52991 * 109.47159 * 63.28263 * 19 2 1 25 25 H 1.09004 * 109.46818 * 183.76803 * 1 2 3 26 26 H 1.09002 * 109.47158 * 303.75844 * 1 2 3 27 27 H 1.08998 * 109.47867 * 63.76142 * 1 2 3 28 28 H 1.08992 * 109.49044 * 56.89249 * 3 2 1 29 29 H 1.09000 * 109.49109 * 296.82561 * 3 2 1 30 30 H 1.08997 * 109.48222 * 298.38088 * 4 3 2 31 31 H 1.09001 * 109.47527 * 178.33818 * 4 3 2 32 32 H 1.09002 * 109.47881 * 54.07068 * 6 5 4 33 33 H 1.09002 * 109.47224 * 174.07511 * 6 5 4 34 34 H 0.96703 * 114.00519 * 299.99631 * 9 7 6 35 35 H 0.97001 * 119.99950 * 180.02562 * 13 12 10 36 36 H 1.08994 * 109.49435 * 179.27046 * 18 5 4 37 37 H 1.08994 * 109.49388 * 299.35850 * 18 5 4 38 38 H 1.08997 * 109.47364 * 300.05815 * 20 19 2 39 39 H 1.09008 * 109.47247 * 60.05863 * 20 19 2 40 40 H 1.08994 * 109.47372 * 180.02562 * 21 20 19 41 41 H 1.09002 * 109.46449 * 60.03555 * 21 20 19 42 42 H 1.08999 * 109.46642 * 299.96989 * 22 21 20 43 43 H 1.09001 * 109.46000 * 179.97438 * 22 21 20 44 44 H 1.08992 * 109.47379 * 180.02562 * 23 22 21 45 45 H 1.09004 * 109.46747 * 59.99781 * 23 22 21 46 46 H 1.09000 * 109.47636 * 299.88231 * 24 19 2 47 47 H 1.09004 * 109.47085 * 59.88977 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3722 0.0000 4 6 3.5234 1.3293 0.0791 5 7 4.0500 0.5659 -1.0608 6 6 5.5190 0.5658 -1.0607 7 6 6.0292 1.9875 -1.3047 8 1 5.6592 2.6461 -0.5188 9 8 5.5615 2.4502 -2.5732 10 6 7.5360 1.9893 -1.2936 11 1 8.0760 1.0684 -1.1294 12 6 8.2256 3.1664 -1.4942 13 7 9.5406 3.1678 -1.4850 14 14 7.2917 4.7589 -1.7788 15 1 7.0343 5.4217 -0.4751 16 1 8.0993 5.6589 -2.6408 17 1 5.9992 4.4622 -2.4470 18 6 3.5233 -0.8061 -1.0603 19 6 1.9955 -0.7623 -1.1404 20 6 1.4416 -2.1876 -1.1022 21 6 1.9913 -2.9802 -2.2899 22 6 1.5685 -2.3026 -3.5949 23 6 2.1226 -0.8769 -3.6327 24 6 1.5729 -0.0849 -2.4454 25 1 -0.3633 -1.0255 0.0675 26 1 -0.3633 0.5711 0.8544 27 1 -0.3635 0.4543 -0.9217 28 1 1.6019 1.9128 0.8607 29 1 1.6929 1.8779 -0.9170 30 1 3.8260 0.8487 1.0094 31 1 3.9175 2.3452 0.0494 32 1 5.8823 0.2098 -0.0966 33 1 5.8823 -0.0912 -1.8510 34 1 5.8529 1.9104 -3.3207 35 1 10.0257 3.9959 -1.6257 36 1 3.9172 -1.3473 -1.9205 37 1 3.8251 -1.3113 -0.1429 38 1 1.7428 -2.6698 -0.1723 39 1 0.3534 -2.1562 -1.1593 40 1 1.5963 -3.9957 -2.2632 41 1 3.0793 -3.0121 -2.2330 42 1 0.4804 -2.2711 -3.6520 43 1 1.9606 -2.8671 -4.4409 44 1 1.8208 -0.3943 -4.5622 45 1 3.2107 -0.9084 -3.5757 46 1 0.4848 -0.0536 -2.5028 47 1 1.9675 0.9309 -2.4719 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930609145.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:29 Heat of formation + Delta-G solvation = -62.303152 kcal Electronic energy + Delta-G solvation = -24614.321612 eV Core-core repulsion = 21409.785829 eV Total energy + Delta-G solvation = -3204.535782 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.68328 -38.68656 -37.14551 -35.89466 -34.39914 -32.09976 -31.52008 -31.06281 -29.17341 -27.35693 -26.13984 -24.40327 -23.90784 -23.16100 -21.86635 -21.13039 -19.39853 -18.86253 -17.34691 -16.86092 -16.65582 -16.52418 -16.31716 -15.60549 -15.46771 -15.26184 -15.11356 -14.88964 -14.73490 -14.45030 -14.43055 -13.58748 -13.48214 -13.16931 -13.04534 -12.99620 -12.93415 -12.65237 -12.56229 -12.44663 -12.35525 -12.09979 -11.81407 -11.77790 -11.51569 -11.20984 -11.03966 -10.98104 -10.85683 -10.76919 -10.09657 -9.23698 -9.05107 -8.35597 -6.49949 1.39153 1.44773 1.75739 2.44076 2.93951 2.97677 3.03652 3.70380 3.85221 3.95298 4.06425 4.10989 4.18400 4.23386 4.28390 4.31106 4.44241 4.45007 4.53653 4.56195 4.61992 4.68527 4.71491 4.78179 4.81380 4.86062 4.87102 4.95112 4.97375 5.03835 5.09780 5.17229 5.22944 5.29327 5.30055 5.45596 5.46829 5.48520 5.56306 5.62025 6.04180 6.08062 6.11397 6.28135 6.29301 6.62704 7.22922 7.38299 8.78790 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024478 B = 0.004996 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.599833 B = 5603.479816 C = 5991.973055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.544 5.544 3 C 0.064 3.936 4 C 0.054 3.946 5 N -0.525 5.525 6 C 0.055 3.945 7 C 0.214 3.786 8 H 0.047 0.953 9 O -0.570 6.570 10 C -0.567 4.567 11 H 0.035 0.965 12 C 0.030 3.970 13 N -0.940 5.940 14 Si 0.938 3.062 15 H -0.286 1.286 16 H -0.297 1.297 17 H -0.204 1.204 18 C 0.067 3.933 19 C 0.122 3.878 20 C -0.100 4.100 21 C -0.119 4.119 22 C -0.114 4.114 23 C -0.113 4.113 24 C -0.128 4.128 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.030 0.970 28 H 0.089 0.911 29 H 0.040 0.960 30 H 0.028 0.972 31 H 0.067 0.933 32 H 0.019 0.981 33 H 0.067 0.933 34 H 0.364 0.636 35 H 0.267 0.733 36 H 0.082 0.918 37 H 0.021 0.979 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.062 0.938 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.093 -10.177 -0.972 24.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.268 5.268 3 C -0.064 4.064 4 C -0.074 4.074 5 N -0.249 5.249 6 C -0.073 4.073 7 C 0.155 3.845 8 H 0.064 0.936 9 O -0.376 6.376 10 C -0.605 4.605 11 H 0.053 0.947 12 C -0.169 4.169 13 N -0.580 5.580 14 Si 0.762 3.238 15 H -0.213 1.213 16 H -0.224 1.224 17 H -0.126 1.126 18 C -0.061 4.061 19 C 0.032 3.968 20 C -0.139 4.139 21 C -0.157 4.157 22 C -0.151 4.151 23 C -0.151 4.151 24 C -0.167 4.167 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.048 0.952 28 H 0.107 0.893 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.037 0.963 33 H 0.086 0.914 34 H 0.211 0.789 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.039 0.961 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.081 0.919 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.245 -9.634 -0.591 24.249 hybrid contribution 1.098 0.469 -0.112 1.199 sum -21.147 -9.165 -0.703 23.058 Atomic orbital electron populations 1.22476 0.86296 1.03038 1.00863 1.62398 1.08895 1.13286 1.42207 1.22096 0.93217 0.89943 1.01175 1.22161 0.95372 0.98437 0.91430 1.62132 1.06843 1.13636 1.42327 1.22472 0.86719 0.98881 0.99200 1.19432 0.90069 0.91118 0.83840 0.93579 1.86587 1.77608 1.56686 1.16761 1.21857 0.92499 0.95022 1.51100 0.94699 1.25824 0.95216 1.03183 0.92704 1.70083 1.08503 1.28994 1.50377 0.86000 0.82003 0.77464 0.78321 1.21252 1.22428 1.12622 1.22295 0.94697 0.89094 0.99971 1.21014 0.92783 0.94380 0.88626 1.21571 1.00844 0.92686 0.98756 1.21576 1.00732 0.99237 0.94120 1.21521 1.00962 0.95069 0.97548 1.21442 1.00331 0.95934 0.97405 1.21919 0.99848 0.99775 0.95128 0.90031 0.90894 0.95167 0.89320 0.94176 0.95421 0.91445 0.96325 0.91416 0.78887 0.92462 0.89951 0.96082 0.91843 0.90418 0.90319 0.92638 0.91387 0.91441 0.92285 0.92877 0.91917 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 8.81 127.69 1.12 1.49 16 2 N -0.54 -12.76 4.74 -872.25 -4.13 -16.89 16 3 C 0.06 1.66 5.24 86.31 0.45 2.12 16 4 C 0.05 1.75 5.41 86.31 0.47 2.22 16 5 N -0.53 -17.61 3.90 -895.71 -3.49 -21.10 16 6 C 0.06 2.20 4.56 86.31 0.39 2.60 16 7 C 0.21 9.90 2.19 29.85 0.07 9.97 16 8 H 0.05 2.22 5.89 -2.38 -0.01 2.20 16 9 O -0.57 -25.29 10.01 -148.98 -1.49 -26.79 16 10 C -0.57 -32.07 9.34 25.60 0.24 -31.83 16 11 H 0.03 2.17 7.99 -2.91 -0.02 2.15 16 12 C 0.03 1.77 5.47 84.66 0.46 2.23 16 13 N -0.94 -58.89 13.96 21.45 0.30 -58.59 16 14 Si 0.94 45.66 26.99 68.60 1.85 47.51 16 15 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 16 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 17 H -0.20 -9.52 5.31 99.48 0.53 -8.99 16 18 C 0.07 1.92 3.62 86.31 0.31 2.23 16 19 C 0.12 2.81 0.43 3.52 0.00 2.81 16 20 C -0.10 -1.85 4.40 30.59 0.13 -1.71 16 21 C -0.12 -1.99 5.65 30.60 0.17 -1.82 16 22 C -0.11 -1.89 5.92 30.60 0.18 -1.71 16 23 C -0.11 -2.42 5.65 30.58 0.17 -2.25 16 24 C -0.13 -2.95 3.90 30.57 0.12 -2.83 16 25 H 0.08 1.23 6.25 -2.38 -0.01 1.22 16 26 H 0.07 1.16 8.13 -2.39 -0.02 1.14 16 27 H 0.03 0.53 6.39 -2.39 -0.02 0.51 16 28 H 0.09 2.02 8.13 -2.39 -0.02 2.00 16 29 H 0.04 1.11 6.34 -2.39 -0.02 1.09 16 30 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 2.38 6.32 -2.39 -0.02 2.36 16 32 H 0.02 0.78 8.12 -2.39 -0.02 0.76 16 33 H 0.07 2.66 8.03 -2.39 -0.02 2.64 16 34 H 0.36 14.61 9.04 -74.06 -0.67 13.94 16 35 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 36 H 0.08 2.30 4.75 -2.39 -0.01 2.29 16 37 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.08 1.23 6.36 -2.38 -0.02 1.21 16 40 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.05 1.06 6.47 -2.39 -0.02 1.04 16 42 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.05 1.33 6.40 -2.39 -0.02 1.31 16 46 H 0.06 1.30 6.48 -2.39 -0.02 1.28 16 47 H 0.05 1.58 5.93 -2.38 -0.01 1.57 16 Total: -1.00 -64.89 332.02 -2.56 -67.45 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.10 Total: 24.88 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 4.30 Total: -16.47 kcal Atomic # 7 Polarization: -89.25 SS G_CDS: -7.32 Total: -96.58 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -1.49 Total: -26.79 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.85 Total: 47.51 kcal Total: -64.89 -2.56 -67.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930609145.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.144 kcal (2) G-P(sol) polarization free energy of solvation -64.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds