Wall clock time and date at job start Tue Mar 31 2020 05:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46936 * 2 1 4 4 C 1.52998 * 109.47217 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47263 * 179.97438 * 4 3 2 6 6 C 1.36935 * 120.00262 * 270.00353 * 5 4 3 7 7 H 1.07997 * 120.00207 * 142.33727 * 6 5 4 8 8 C 1.38816 * 119.99823 * 322.33448 * 6 5 4 9 9 N 1.31621 * 119.99942 * 158.10852 * 8 6 5 10 10 Si 1.86804 * 120.00127 * 338.10516 * 8 6 5 11 11 H 1.48505 * 109.46553 * 95.32776 * 10 8 6 12 12 H 1.48490 * 109.47243 * 215.32760 * 10 8 6 13 13 H 1.48492 * 109.47078 * 335.33276 * 10 8 6 14 14 C 1.46839 * 120.00045 * 90.00334 * 5 4 3 15 15 C 1.52840 * 109.22742 * 235.68123 * 14 5 4 16 16 C 1.52674 * 110.35145 * 180.82264 * 15 14 5 17 17 C 1.53336 * 109.52485 * 284.87968 * 16 15 14 18 18 C 1.54491 * 107.52464 * 168.70104 * 16 15 14 19 19 N 1.44794 * 112.95671 * 49.39032 * 16 15 14 20 20 C 1.44784 * 120.28435 * 319.44609 * 19 16 15 21 21 C 1.53338 * 111.16837 * 276.84099 * 20 19 16 22 22 C 1.54507 * 108.19209 * 159.38975 * 20 19 16 23 23 C 1.52668 * 113.00812 * 40.46041 * 20 19 16 24 24 H 1.08998 * 109.46994 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47037 * 299.99956 * 1 2 3 26 26 H 1.08997 * 109.47197 * 60.00354 * 1 2 3 27 27 H 1.08991 * 109.47378 * 239.99863 * 2 1 3 28 28 H 1.08997 * 109.47197 * 119.99646 * 2 1 3 29 29 H 1.09000 * 109.47358 * 59.99642 * 3 2 1 30 30 H 1.08997 * 109.46888 * 299.99835 * 3 2 1 31 31 H 1.08997 * 109.47429 * 300.00367 * 4 3 2 32 32 H 1.09003 * 109.46710 * 60.00072 * 4 3 2 33 33 H 0.96994 * 120.00011 * 179.97438 * 9 8 6 34 34 H 1.08702 * 108.94011 * 356.39968 * 14 5 4 35 35 H 1.09232 * 109.37914 * 301.27610 * 15 14 5 36 36 H 1.09236 * 109.38071 * 60.36684 * 15 14 5 37 37 H 1.09000 * 109.47197 * 185.53814 * 17 16 15 38 38 H 1.08998 * 109.47359 * 305.53932 * 17 16 15 39 39 H 1.09005 * 109.46869 * 65.54172 * 17 16 15 40 40 H 1.09007 * 109.47149 * 297.69733 * 18 16 15 41 41 H 1.09006 * 109.47411 * 57.69414 * 18 16 15 42 42 H 1.09003 * 109.47364 * 177.69506 * 18 16 15 43 43 H 1.00897 * 112.57452 * 183.03159 * 19 16 15 44 44 H 1.08998 * 109.47198 * 185.58608 * 21 20 19 45 45 H 1.09002 * 109.46966 * 305.58355 * 21 20 19 46 46 H 1.08998 * 109.47112 * 65.58709 * 21 20 19 47 47 H 1.09001 * 109.47032 * 302.46355 * 22 20 19 48 48 H 1.09001 * 109.47412 * 62.46318 * 22 20 19 49 49 H 1.09000 * 109.47271 * 182.46361 * 22 20 19 50 50 H 1.09241 * 109.42836 * 190.38346 * 23 20 19 51 51 H 1.09240 * 109.44306 * 71.23738 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.2869 3.4687 -1.1861 7 1 4.0519 4.5182 -1.2843 8 6 4.8209 2.7734 -2.2624 9 7 4.6510 3.2248 -3.4871 10 14 5.7807 1.1972 -1.9728 11 1 4.8759 0.0305 -2.1323 12 1 6.8877 1.1036 -2.9580 13 1 6.3411 1.2046 -0.5977 14 6 4.3025 3.5168 1.2714 15 6 3.4975 4.8157 1.2994 16 6 3.7487 5.5680 2.6039 17 6 2.9959 4.8771 3.7472 18 6 3.1463 6.9822 2.4488 19 7 5.1563 5.7074 2.9134 20 6 6.0672 4.6059 2.6828 21 6 6.0442 3.6144 3.8523 22 6 7.5007 5.1756 2.5950 23 6 5.7872 3.8630 1.3788 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 3.9330 0.9289 0.8908 32 1 3.9336 0.9287 -0.8892 33 1 5.0244 2.7392 -4.2391 34 1 4.0039 2.8673 2.0903 35 1 3.7923 5.4431 0.4552 36 1 2.4334 4.5846 1.2120 37 1 3.0950 5.4686 4.6573 38 1 1.9416 4.7866 3.4856 39 1 3.4160 3.8847 3.9113 40 1 3.6569 7.5082 1.6421 41 1 2.0847 6.9013 2.2150 42 1 3.2722 7.5349 3.3799 43 1 5.3148 6.1621 3.8001 44 1 6.8079 2.8523 3.6976 45 1 6.2442 4.1455 4.7829 46 1 5.0641 3.1405 3.9077 47 1 7.5476 5.9203 1.8005 48 1 7.7659 5.6402 3.5447 49 1 8.1999 4.3681 2.3779 50 1 6.3766 2.9437 1.3505 51 1 6.0749 4.4919 0.5331 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931031424.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:08 Heat of formation + Delta-G solvation = -2.971672 kcal Electronic energy + Delta-G solvation = -24992.856191 eV Core-core repulsion = 21926.726309 eV Total energy + Delta-G solvation = -3066.129882 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.50841 -36.40251 -34.66638 -34.03068 -31.83960 -30.28626 -28.45705 -27.50013 -27.33919 -26.39989 -25.58359 -24.16287 -22.62850 -20.59971 -20.14980 -19.90158 -17.78463 -16.32360 -15.69923 -15.27012 -14.87784 -14.64428 -14.46088 -13.74050 -13.54251 -13.34405 -13.31703 -12.91262 -12.82408 -12.62671 -12.49371 -12.12306 -12.05009 -11.96047 -11.92489 -11.51501 -11.39968 -11.30784 -11.16672 -11.07691 -10.91334 -10.68464 -10.50681 -10.45674 -10.26605 -10.16225 -9.97827 -9.95118 -9.65778 -9.49091 -9.21210 -8.40845 -7.75421 -6.71370 -5.92180 -3.32435 3.34690 3.50409 3.55250 4.30199 4.58058 4.81909 5.17122 5.21845 5.30837 5.31686 5.41686 5.43452 5.46515 5.51861 5.61185 5.69226 5.82191 5.86093 5.88966 5.94178 5.97265 5.98477 6.06887 6.09851 6.12287 6.18010 6.20552 6.24910 6.30834 6.31478 6.35955 6.36575 6.40805 6.50795 6.55023 6.55880 6.62695 6.63951 6.79421 6.88365 6.96975 7.10293 7.15404 7.23906 7.95221 7.96720 8.14495 8.47665 9.08009 9.80148 10.21509 11.23631 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.013228 B = 0.007133 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.206765 B = 3924.742018 C = 4842.815118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C -0.132 4.132 4 C 0.139 3.861 5 N -0.604 5.604 6 C -0.255 4.255 7 H 0.080 0.920 8 C 0.036 3.964 9 N -0.903 5.903 10 Si 0.874 3.126 11 H -0.288 1.288 12 H -0.305 1.305 13 H -0.270 1.270 14 C 0.182 3.818 15 C -0.111 4.111 16 C 0.149 3.851 17 C -0.177 4.177 18 C -0.139 4.139 19 N -0.716 5.716 20 C 0.149 3.851 21 C -0.177 4.177 22 C -0.140 4.140 23 C -0.116 4.116 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.032 0.968 32 H 0.051 0.949 33 H 0.261 0.739 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.045 0.955 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.044 0.956 43 H 0.347 0.653 44 H 0.054 0.946 45 H 0.045 0.955 46 H 0.054 0.946 47 H 0.061 0.939 48 H 0.043 0.957 49 H 0.053 0.947 50 H 0.055 0.945 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.938 0.756 14.298 14.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.172 4.172 4 C 0.013 3.987 5 N -0.325 5.325 6 C -0.384 4.384 7 H 0.098 0.902 8 C -0.164 4.164 9 N -0.544 5.544 10 Si 0.706 3.294 11 H -0.217 1.217 12 H -0.233 1.233 13 H -0.195 1.195 14 C 0.075 3.925 15 C -0.151 4.151 16 C 0.058 3.942 17 C -0.237 4.237 18 C -0.197 4.197 19 N -0.351 5.351 20 C 0.058 3.942 21 C -0.236 4.236 22 C -0.198 4.198 23 C -0.155 4.155 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.170 0.830 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.062 0.938 49 H 0.072 0.928 50 H 0.074 0.926 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.825 0.853 13.539 13.688 hybrid contribution 0.395 -1.389 0.764 1.634 sum -1.431 -0.536 14.303 14.384 Atomic orbital electron populations 1.21746 0.96554 1.00588 1.01589 1.21529 0.95255 0.98462 1.01153 1.22130 0.98640 0.94553 1.01877 1.21181 0.92034 0.86757 0.98689 1.44333 1.75113 1.11050 1.02002 1.18683 1.36315 0.96485 0.86882 0.90238 1.25449 0.98028 0.97624 0.95321 1.69865 1.45887 1.40848 0.97834 0.86971 0.80395 0.84382 0.77692 1.21683 1.23330 1.19479 1.20242 0.92281 0.92019 0.87911 1.21958 0.99972 0.97735 0.95412 1.20316 0.84743 0.94626 0.94519 1.22760 1.01037 1.00934 0.98948 1.22242 0.99934 0.96313 1.01228 1.54490 1.07393 1.35113 1.38150 1.20326 0.91080 0.88204 0.94634 1.22760 1.01807 1.00306 0.98765 1.22251 0.95534 1.00820 1.01173 1.22034 0.98741 0.99311 0.95446 0.93595 0.93192 0.92778 0.92466 0.92932 0.93209 0.91368 0.94935 0.93087 0.92929 0.93431 0.90663 0.92333 0.93597 0.92555 0.92698 0.92099 0.92795 0.93723 0.83001 0.92645 0.93558 0.92698 0.92019 0.93756 0.92823 0.92633 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.16 0.37 -1.65 16 2 C -0.13 -2.01 5.93 -26.73 -0.16 -2.17 16 3 C -0.13 -2.50 5.54 -26.73 -0.15 -2.65 16 4 C 0.14 2.98 4.46 -4.04 -0.02 2.96 16 5 N -0.60 -13.76 2.03 -165.73 -0.34 -14.09 16 6 C -0.26 -6.84 8.67 -15.06 -0.13 -6.97 16 7 H 0.08 2.33 6.80 -52.49 -0.36 1.97 16 8 C 0.04 1.01 5.31 -17.43 -0.09 0.92 16 9 N -0.90 -27.35 13.97 55.49 0.78 -26.58 16 10 Si 0.87 22.30 25.02 -169.99 -4.25 18.05 16 11 H -0.29 -7.22 6.67 56.52 0.38 -6.84 16 12 H -0.30 -7.98 7.11 56.52 0.40 -7.57 16 13 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 14 C 0.18 3.51 2.51 -67.91 -0.17 3.33 16 15 C -0.11 -2.00 3.86 -26.98 -0.10 -2.10 16 16 C 0.15 2.14 0.92 -131.94 -0.12 2.01 16 17 C -0.18 -2.27 8.29 37.33 0.31 -1.96 16 18 C -0.14 -1.83 8.52 37.94 0.32 -1.50 16 19 N -0.72 -9.96 4.80 -87.44 -0.42 -10.38 16 20 C 0.15 2.19 0.93 -131.94 -0.12 2.07 16 21 C -0.18 -2.34 8.23 37.33 0.31 -2.03 16 22 C -0.14 -1.90 8.52 37.95 0.32 -1.58 16 23 C -0.12 -2.17 3.98 -26.99 -0.11 -2.28 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.03 0.64 7.95 -51.93 -0.41 0.23 16 32 H 0.05 1.22 3.24 -51.93 -0.17 1.05 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.05 0.88 6.00 -52.10 -0.31 0.57 16 35 H 0.07 1.57 6.71 -51.80 -0.35 1.22 16 36 H 0.06 1.07 8.02 -51.80 -0.42 0.66 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.71 8.06 -51.93 -0.42 0.29 16 39 H 0.05 0.74 5.09 -51.93 -0.26 0.47 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.35 4.20 8.81 -39.29 -0.35 3.85 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.05 0.75 5.03 -51.93 -0.26 0.49 16 47 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.05 1.10 8.07 -51.79 -0.42 0.68 16 51 H 0.08 1.68 7.58 -51.79 -0.39 1.29 16 LS Contribution 372.21 15.07 5.61 5.61 Total: -1.00 -28.28 372.21 -8.20 -36.49 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -10.04 Total: 4.49 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 0.46 Total: -13.58 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: 0.02 Total: -51.05 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.25 Total: 18.05 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.28 -8.20 -36.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931031424.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.516 kcal (2) G-P(sol) polarization free energy of solvation -28.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds