Wall clock time and date at job start Tue Mar 31 2020 05:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99861 * 2 1 4 4 C 1.50696 * 109.47017 * 293.94975 * 3 2 1 5 5 H 1.07998 * 120.00208 * 0.02562 * 4 3 2 6 6 C 1.37882 * 120.00056 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99924 * 179.97438 * 6 4 3 8 8 Si 1.86794 * 119.99936 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.47149 * 90.00464 * 8 6 4 10 10 H 1.48501 * 109.47323 * 210.00177 * 8 6 4 11 11 H 1.48496 * 109.47118 * 330.00242 * 8 6 4 12 12 C 1.46899 * 110.99799 * 123.94867 * 2 1 3 13 13 C 1.53008 * 109.47102 * 164.06863 * 12 2 1 14 14 H 1.09004 * 109.46636 * 58.46950 * 13 12 2 15 15 O 1.42894 * 109.47099 * 298.46333 * 13 12 2 16 16 C 1.52997 * 109.47037 * 178.46462 * 13 12 2 17 17 N 1.46895 * 109.46984 * 185.00080 * 16 13 12 18 18 C 1.46901 * 111.00025 * 180.02562 * 17 16 13 19 19 H 1.09003 * 115.55264 * 9.41898 * 18 17 16 20 20 C 1.53005 * 117.50209 * 223.74951 * 18 17 16 21 21 C 1.52997 * 117.50176 * 155.08886 * 18 17 16 22 22 H 1.09004 * 117.49515 * 359.97438 * 21 18 17 23 23 C 1.53001 * 117.50236 * 214.98336 * 21 18 17 24 24 C 1.53776 * 113.61764 * 157.49437 * 23 21 18 25 25 C 1.53775 * 87.08101 * 220.01538 * 24 23 21 26 26 C 1.53773 * 113.61536 * 59.99334 * 23 21 18 27 27 H 1.09000 * 109.47103 * 301.47456 * 1 2 3 28 28 H 1.08997 * 109.46942 * 61.47465 * 1 2 3 29 29 H 1.09000 * 109.46960 * 181.47410 * 1 2 3 30 30 H 1.09001 * 109.47350 * 53.95068 * 3 2 1 31 31 H 1.09003 * 109.46978 * 173.95604 * 3 2 1 32 32 H 0.96996 * 119.99716 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.47347 * 284.07168 * 12 2 1 34 34 H 1.09005 * 109.47006 * 44.07348 * 12 2 1 35 35 H 0.96691 * 114.00456 * 300.00204 * 15 13 12 36 36 H 1.09007 * 109.47112 * 305.00213 * 16 13 12 37 37 H 1.09004 * 109.46988 * 65.00050 * 16 13 12 38 38 H 1.00896 * 111.00286 * 303.95421 * 17 16 13 39 39 H 1.08999 * 117.49004 * 359.97438 * 20 18 17 40 40 H 1.08996 * 117.50173 * 145.02210 * 20 18 17 41 41 H 1.09005 * 112.84819 * 288.79956 * 23 21 18 42 42 H 1.08999 * 113.61350 * 334.56546 * 24 23 21 43 43 H 1.08998 * 113.61681 * 105.46866 * 24 23 21 44 44 H 1.09003 * 113.61802 * 270.87968 * 25 24 23 45 45 H 1.09003 * 113.61448 * 139.97831 * 25 24 23 46 46 H 1.09001 * 113.61917 * 254.53338 * 26 23 21 47 47 H 1.09003 * 113.61866 * 25.35410 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 1 1.0741 1.5114 -2.0485 6 6 2.0277 3.3491 -1.5290 7 7 1.7153 3.9385 -2.6624 8 14 3.0008 4.2758 -0.2314 9 1 4.4532 4.0625 -0.4556 10 1 2.6935 5.7257 -0.3239 11 1 2.6293 3.7760 1.1167 12 6 1.9954 -0.7659 1.1377 13 6 3.4733 -1.0827 0.8992 14 1 4.0278 -0.1531 0.7704 15 8 3.6050 -1.8830 -0.2772 16 6 4.0314 -1.8471 2.1012 17 7 5.4762 -2.0466 1.9267 18 6 6.0477 -2.7796 3.0643 19 1 5.3249 -3.1982 3.7648 20 6 7.3743 -2.2748 3.6356 21 6 7.3348 -3.5700 2.8208 22 1 7.7573 -3.5465 1.8163 23 6 7.5092 -4.8873 3.5793 24 6 8.4976 -5.8571 2.9106 25 6 7.5226 -6.9854 3.2857 26 6 6.4121 -5.9217 3.2777 27 1 -0.3633 0.5366 0.8765 28 1 -0.3633 0.4907 -0.9029 29 1 -0.3633 -1.0273 0.0264 30 1 1.5611 1.9274 0.8309 31 1 3.0798 1.3444 0.1082 32 1 1.9899 4.8546 -2.8244 33 1 1.8924 -0.1784 2.0500 34 1 1.4363 -1.6961 1.2393 35 1 3.1357 -2.7273 -0.2332 36 1 3.8508 -1.2751 3.0114 37 1 3.5373 -2.8158 2.1770 38 1 5.6737 -2.5184 1.0570 39 1 7.8231 -1.3990 3.1669 40 1 7.5245 -2.3616 4.7116 41 1 7.6911 -4.7417 4.6441 42 1 8.5980 -5.7060 1.8358 43 1 9.4583 -5.9225 3.4213 44 1 7.7092 -7.4146 4.2702 45 1 7.4091 -7.7409 2.5082 46 1 5.6890 -6.0393 4.0848 47 1 5.9412 -5.7875 2.3038 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120519375.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:38 Heat of formation + Delta-G solvation = -2.631825 kcal Electronic energy + Delta-G solvation = -22274.913161 eV Core-core repulsion = 19072.964921 eV Total energy + Delta-G solvation = -3201.948240 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.72115 -38.31314 -36.88579 -35.58028 -33.12282 -32.38683 -29.51778 -27.92712 -26.39701 -25.91903 -25.34425 -23.20514 -21.67694 -21.38795 -21.00346 -19.90810 -19.68123 -16.96096 -16.36085 -16.24036 -15.85842 -15.76200 -15.18326 -14.61339 -14.47263 -13.96986 -13.87710 -13.71207 -13.18283 -12.82339 -12.76669 -12.75125 -12.49595 -12.28910 -12.05994 -12.00329 -11.54764 -11.30509 -11.11129 -11.05522 -10.95464 -10.87232 -10.74572 -10.46859 -10.36072 -10.13510 -9.99990 -9.85065 -9.58154 -9.17929 -8.51068 -8.33851 -7.32157 -5.99914 -3.96465 3.33195 3.39823 3.41562 3.54390 3.76830 4.29105 4.39321 4.42211 4.46871 4.57996 4.67303 4.80338 4.85627 4.87478 5.06467 5.17226 5.25075 5.27643 5.32967 5.34927 5.39977 5.44174 5.48719 5.58956 5.61306 5.62702 5.64196 5.73165 5.82747 5.92299 5.93669 6.03837 6.06079 6.19318 6.25559 6.41439 6.68265 6.88133 6.97327 7.01368 7.30318 7.64074 7.89173 8.04864 8.07945 8.71098 9.09011 9.61963 11.13383 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024544 B = 0.003041 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.547132 B = 9204.362890 C = 9808.771539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.521 5.521 3 C 0.161 3.839 4 C -0.505 4.505 5 H 0.080 0.920 6 C 0.067 3.933 7 N -0.901 5.901 8 Si 0.874 3.126 9 H -0.274 1.274 10 H -0.287 1.287 11 H -0.269 1.269 12 C 0.024 3.976 13 C 0.113 3.887 14 H 0.109 0.891 15 O -0.540 6.540 16 C 0.033 3.967 17 N -0.654 5.654 18 C 0.026 3.974 19 H 0.096 0.904 20 C -0.167 4.167 21 C -0.153 4.153 22 H 0.107 0.893 23 C -0.080 4.080 24 C -0.134 4.134 25 C -0.145 4.145 26 C -0.135 4.135 27 H 0.011 0.989 28 H 0.079 0.921 29 H 0.045 0.955 30 H -0.014 1.014 31 H 0.026 0.974 32 H 0.263 0.737 33 H 0.031 0.969 34 H 0.063 0.937 35 H 0.361 0.639 36 H 0.078 0.922 37 H 0.031 0.969 38 H 0.350 0.650 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.660 -20.097 15.145 26.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.245 5.245 3 C 0.035 3.965 4 C -0.543 4.543 5 H 0.098 0.902 6 C -0.134 4.134 7 N -0.541 5.541 8 Si 0.701 3.299 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.194 1.194 12 C -0.106 4.106 13 C 0.053 3.947 14 H 0.127 0.873 15 O -0.343 6.343 16 C -0.097 4.097 17 N -0.286 5.286 18 C -0.085 4.085 19 H 0.114 0.886 20 C -0.205 4.205 21 C -0.172 4.172 22 H 0.125 0.875 23 C -0.099 4.099 24 C -0.171 4.171 25 C -0.182 4.182 26 C -0.172 4.172 27 H 0.029 0.971 28 H 0.098 0.902 29 H 0.064 0.936 30 H 0.004 0.996 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.206 0.794 36 H 0.097 0.903 37 H 0.049 0.951 38 H 0.171 0.829 39 H 0.117 0.883 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.337 -19.006 14.644 26.125 hybrid contribution -0.424 -0.213 1.520 1.592 sum 9.913 -19.219 16.163 26.998 Atomic orbital electron populations 1.22232 0.88181 0.99208 1.01316 1.61867 1.06964 1.16509 1.39156 1.20239 0.95090 0.83996 0.97213 1.21015 1.35387 0.97090 1.00831 0.90162 1.24899 0.95821 0.97394 0.95283 1.69896 1.47083 1.13261 1.23839 0.86885 0.81107 0.79216 0.82703 1.19996 1.21251 1.19377 1.22718 0.95884 0.98464 0.93535 1.22002 0.94683 0.94680 0.83353 0.87299 1.86706 1.75197 1.33305 1.39059 1.22716 0.87676 0.99083 1.00261 1.60110 1.12587 1.51780 1.04080 1.22416 0.90146 0.99227 0.96674 0.88636 1.23299 1.00843 0.97420 0.98925 1.22726 1.02175 0.91788 1.00560 0.87544 1.22145 0.96990 0.91722 0.99023 1.22946 0.97399 0.95793 1.00960 1.22819 0.97066 0.96681 1.01662 1.22919 0.96388 0.95891 1.02034 0.97093 0.90192 0.93604 0.99642 0.95619 0.92730 0.95041 0.91819 0.79394 0.90346 0.95057 0.82901 0.88303 0.89108 0.89351 0.89979 0.91617 0.90372 0.91495 0.91823 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.33 60.07 0.56 1.31 16 2 N -0.52 -11.02 4.60 -244.36 -1.12 -12.15 16 3 C 0.16 4.00 3.64 -4.98 -0.02 3.98 16 4 C -0.50 -14.73 9.09 -34.44 -0.31 -15.05 16 5 H 0.08 2.55 7.34 -52.49 -0.39 2.16 16 6 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 7 N -0.90 -28.19 13.96 55.43 0.77 -27.42 16 8 Si 0.87 22.07 27.47 -169.99 -4.67 17.40 16 9 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.27 -6.54 6.54 56.52 0.37 -6.17 16 12 C 0.02 0.39 4.63 -3.82 -0.02 0.37 16 13 C 0.11 1.75 3.23 -26.73 -0.09 1.67 16 14 H 0.11 2.05 6.55 -51.93 -0.34 1.71 16 15 O -0.54 -8.64 12.75 -35.23 -0.45 -9.09 16 16 C 0.03 0.40 5.21 -3.83 -0.02 0.38 16 17 N -0.65 -7.90 6.75 -106.72 -0.72 -8.62 16 18 C 0.03 0.26 5.77 -67.71 -0.39 -0.13 16 19 H 0.10 0.93 7.90 -51.93 -0.41 0.52 16 20 C -0.17 -1.61 10.15 -26.69 -0.27 -1.88 16 21 C -0.15 -1.35 5.35 -90.58 -0.48 -1.84 16 22 H 0.11 1.00 7.97 -51.93 -0.41 0.59 16 23 C -0.08 -0.60 3.88 -89.81 -0.35 -0.95 16 24 C -0.13 -0.92 7.63 -25.92 -0.20 -1.12 16 25 C -0.14 -0.94 8.08 -25.92 -0.21 -1.15 16 26 C -0.13 -0.97 7.45 -25.92 -0.19 -1.16 16 27 H 0.01 0.20 8.13 -51.93 -0.42 -0.22 16 28 H 0.08 1.71 6.90 -51.93 -0.36 1.36 16 29 H 0.05 0.73 7.97 -51.93 -0.41 0.32 16 30 H -0.01 -0.35 7.17 -51.93 -0.37 -0.73 16 31 H 0.03 0.65 5.81 -51.93 -0.30 0.35 16 32 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 33 H 0.03 0.51 8.05 -51.93 -0.42 0.10 16 34 H 0.06 0.88 7.88 -51.93 -0.41 0.47 16 35 H 0.36 4.29 9.04 45.56 0.41 4.71 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.35 4.23 8.24 -39.29 -0.32 3.91 16 39 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.09 0.77 8.13 -51.93 -0.42 0.34 16 41 H 0.09 0.64 8.08 -51.93 -0.42 0.22 16 42 H 0.08 0.58 7.98 -51.93 -0.41 0.16 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 371.73 15.07 5.60 5.60 Total: -1.00 -32.00 371.73 -10.63 -42.63 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -7.96 Total: 5.29 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -2.09 Total: -13.65 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: -1.07 Total: -48.18 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -0.45 Total: -9.09 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.00 -10.63 -42.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120519375.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.002 kcal (2) G-P(sol) polarization free energy of solvation -32.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds