Wall clock time and date at job start Tue Mar 31 2020 05:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 111.00199 * 2 1 4 4 C 1.50709 * 109.46962 * 293.95447 * 3 2 1 5 5 H 1.08002 * 120.00048 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99939 * 179.97438 * 4 3 2 7 7 N 1.31521 * 119.99812 * 0.02562 * 6 4 3 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47205 * 60.00211 * 8 6 4 10 10 H 1.48496 * 109.47378 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47395 * 300.00279 * 8 6 4 12 12 C 1.46901 * 110.99585 * 123.95362 * 2 1 3 13 13 C 1.52998 * 109.47199 * 66.04674 * 12 2 1 14 14 H 1.08997 * 109.47015 * 304.99751 * 13 12 2 15 15 O 1.42909 * 109.47260 * 64.99569 * 13 12 2 16 16 C 1.52999 * 109.47066 * 184.99769 * 13 12 2 17 17 N 1.46901 * 109.46878 * 180.02562 * 16 13 12 18 18 C 1.46908 * 110.99879 * 180.02562 * 17 16 13 19 19 H 1.09002 * 115.55958 * 9.30440 * 18 17 16 20 20 C 1.52997 * 117.49626 * 223.62269 * 18 17 16 21 21 C 1.53000 * 117.49789 * 154.99779 * 18 17 16 22 22 H 1.08990 * 117.49990 * 359.97438 * 21 18 17 23 23 C 1.52998 * 117.49463 * 214.97577 * 21 18 17 24 24 C 1.53784 * 113.61322 * 157.48421 * 23 21 18 25 25 C 1.53776 * 87.08367 * 220.01971 * 24 23 21 26 26 C 1.53782 * 87.08020 * 25.43491 * 25 24 23 27 27 H 1.08993 * 109.47161 * 296.04989 * 1 2 3 28 28 H 1.09007 * 109.47105 * 56.04707 * 1 2 3 29 29 H 1.08994 * 109.47067 * 176.04345 * 1 2 3 30 30 H 1.09000 * 109.47007 * 53.95223 * 3 2 1 31 31 H 1.08997 * 109.46926 * 173.95554 * 3 2 1 32 32 H 0.96998 * 119.99759 * 179.97438 * 7 6 4 33 33 H 1.08996 * 109.47316 * 306.04687 * 12 2 1 34 34 H 1.09000 * 109.46536 * 186.04572 * 12 2 1 35 35 H 0.96700 * 113.99633 * 60.00340 * 15 13 12 36 36 H 1.08999 * 109.47409 * 60.00285 * 16 13 12 37 37 H 1.08997 * 109.47188 * 299.99876 * 16 13 12 38 38 H 1.00899 * 110.99862 * 303.94781 * 17 16 13 39 39 H 1.08999 * 117.49685 * 145.02139 * 20 18 17 40 40 H 1.08997 * 117.50044 * 359.97438 * 20 18 17 41 41 H 1.09001 * 112.85322 * 288.79035 * 23 21 18 42 42 H 1.09000 * 113.61345 * 334.57451 * 24 23 21 43 43 H 1.08997 * 113.61206 * 105.46676 * 24 23 21 44 44 H 1.09003 * 113.61731 * 270.88222 * 25 24 23 45 45 H 1.09000 * 113.61539 * 139.97792 * 25 24 23 46 46 H 1.09002 * 113.60958 * 220.01903 * 26 25 24 47 47 H 1.08998 * 113.69486 * 89.13091 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0747 1.5112 -2.0489 6 6 2.0269 3.3494 -1.5286 7 7 2.7121 4.0018 -0.6150 8 14 1.5831 4.1867 -3.1383 9 1 0.1059 4.2230 -3.2866 10 1 2.1152 5.5731 -3.1383 11 1 2.1758 3.4296 -4.2699 12 6 1.9954 -0.7660 1.1376 13 6 1.6314 -2.2426 0.9704 14 1 0.5531 -2.3388 0.8433 15 8 2.2955 -2.7696 -0.1800 16 6 2.0698 -3.0199 2.2132 17 7 1.7209 -4.4377 2.0523 18 6 2.1273 -5.2168 3.2296 19 1 2.4658 -4.6332 4.0857 20 6 2.8024 -6.5676 2.9840 21 6 1.3682 -6.5143 3.5145 22 1 0.5671 -6.7896 2.8288 23 6 1.1424 -6.8934 4.9795 24 6 -0.0424 -7.8503 5.1926 25 6 -0.3807 -7.0266 6.4463 26 6 0.3380 -5.8475 5.7694 27 1 -0.3633 0.4513 0.9232 28 1 -0.3634 0.5740 -0.8525 29 1 -0.3633 -1.0252 -0.0709 30 1 1.5612 1.9273 0.8309 31 1 3.0798 1.3443 0.1082 32 1 2.9867 4.9179 -0.7770 33 1 1.5610 -0.3873 2.0628 34 1 3.0797 -0.6611 1.1756 35 1 3.2601 -2.7168 -0.1359 36 1 1.5632 -2.6180 3.0906 37 1 3.1481 -2.9236 2.3402 38 1 0.7350 -4.5488 1.8684 39 1 3.5849 -6.8728 3.6788 40 1 2.9446 -6.8785 1.9491 41 1 2.0570 -7.2104 5.4806 42 1 -0.8001 -7.7878 4.4114 43 1 0.2579 -8.8750 5.4112 44 1 0.1168 -7.3812 7.3491 45 1 -1.4493 -6.8641 6.5867 46 1 0.9453 -5.2554 6.4540 47 1 -0.3146 -5.2364 5.1459 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120519376.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:40 Heat of formation + Delta-G solvation = -6.146877 kcal Electronic energy + Delta-G solvation = -21981.857213 eV Core-core repulsion = 18779.756549 eV Total energy + Delta-G solvation = -3202.100664 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.73825 -38.22812 -36.87425 -35.42739 -33.16094 -32.48277 -29.33507 -27.08929 -26.41194 -25.93356 -25.60098 -23.51672 -21.53979 -21.43188 -20.91406 -20.10195 -19.69349 -16.59514 -16.40337 -16.15517 -15.82558 -15.56135 -15.14261 -14.70731 -14.35537 -14.26733 -13.90177 -13.52667 -13.28057 -12.79519 -12.78575 -12.64977 -12.54033 -12.13906 -11.92893 -11.82548 -11.33854 -11.15967 -11.05559 -10.96886 -10.87871 -10.85846 -10.74903 -10.65529 -10.38286 -10.25254 -10.00725 -9.91820 -9.52538 -9.08578 -8.41693 -8.34578 -7.18262 -6.01049 -4.02017 3.35596 3.39056 3.42809 3.51842 3.73792 4.27359 4.37787 4.40263 4.45025 4.59652 4.76416 4.79595 4.84399 4.88551 5.07358 5.14910 5.21489 5.30793 5.34692 5.38364 5.42162 5.44179 5.52601 5.58031 5.61116 5.63299 5.67085 5.72572 5.81305 5.91173 6.03063 6.06568 6.17478 6.19964 6.31004 6.42356 6.77005 6.92764 7.21267 7.28620 7.33811 7.81909 8.06716 8.16582 8.22979 8.57103 9.05667 9.62010 11.09904 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037949 B = 0.002430 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.652542 B =11521.666660 C =11750.580700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.530 5.530 3 C 0.193 3.807 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.025 3.975 13 C 0.116 3.884 14 H 0.092 0.908 15 O -0.536 6.536 16 C 0.029 3.971 17 N -0.647 5.647 18 C 0.025 3.975 19 H 0.096 0.904 20 C -0.165 4.165 21 C -0.154 4.154 22 H 0.106 0.894 23 C -0.081 4.081 24 C -0.133 4.133 25 C -0.145 4.145 26 C -0.135 4.135 27 H 0.008 0.992 28 H 0.075 0.925 29 H 0.046 0.954 30 H -0.011 1.011 31 H 0.028 0.972 32 H 0.261 0.739 33 H 0.026 0.974 34 H 0.071 0.929 35 H 0.369 0.631 36 H 0.036 0.964 37 H 0.076 0.924 38 H 0.342 0.658 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.267 -21.933 13.535 25.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.254 5.254 3 C 0.068 3.932 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.105 4.105 13 C 0.056 3.944 14 H 0.110 0.890 15 O -0.340 6.340 16 C -0.101 4.101 17 N -0.277 5.277 18 C -0.085 4.085 19 H 0.114 0.886 20 C -0.203 4.203 21 C -0.173 4.173 22 H 0.124 0.876 23 C -0.099 4.099 24 C -0.171 4.171 25 C -0.182 4.182 26 C -0.173 4.173 27 H 0.026 0.974 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.007 0.993 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.215 0.785 36 H 0.055 0.945 37 H 0.094 0.906 38 H 0.161 0.839 39 H 0.109 0.891 40 H 0.117 0.883 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.074 -22.205 12.571 25.701 hybrid contribution -0.494 1.441 0.893 1.766 sum -3.568 -20.764 13.464 25.003 Atomic orbital electron populations 1.22257 0.89094 0.99502 1.00395 1.62025 1.06743 1.17433 1.39158 1.19741 0.95288 0.81593 0.96597 1.21136 1.34758 0.96828 1.01679 0.91837 1.25001 0.95339 0.97359 0.97043 1.69954 1.38463 1.11489 1.34147 0.86536 0.78676 0.78249 0.83806 1.20299 1.21406 1.20102 1.22722 1.00586 0.93868 0.93295 1.21879 0.97513 0.90688 0.84331 0.89036 1.86586 1.22952 1.83898 1.40541 1.22770 1.01619 0.87703 0.98029 1.60130 1.23187 1.08710 1.35716 1.22442 1.03962 0.88690 0.93432 0.88592 1.23277 0.94387 1.00363 1.02297 1.22705 0.96134 1.02044 0.96411 0.87644 1.22152 0.97614 0.96953 0.93189 1.22945 0.97941 0.98156 0.98045 1.22821 1.00665 0.97307 0.97450 1.22925 0.99049 0.96403 0.98916 0.97399 0.90644 0.93536 0.99349 0.95350 0.92916 0.95571 0.91095 0.78513 0.94533 0.90561 0.83874 0.89121 0.88300 0.89301 0.90051 0.91608 0.90328 0.91511 0.91733 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.14 60.07 0.55 1.27 16 2 N -0.53 -11.64 4.70 -244.37 -1.15 -12.79 16 3 C 0.19 5.11 4.72 -4.97 -0.02 5.08 16 4 C -0.51 -14.46 8.46 -34.44 -0.29 -14.75 16 5 H 0.06 1.81 7.12 -52.49 -0.37 1.43 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 8 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.03 0.44 4.60 -3.82 -0.02 0.42 16 13 C 0.12 1.69 3.13 -26.73 -0.08 1.61 16 14 H 0.09 1.37 6.34 -51.93 -0.33 1.04 16 15 O -0.54 -8.69 13.15 -35.23 -0.46 -9.15 16 16 C 0.03 0.34 5.20 -3.82 -0.02 0.32 16 17 N -0.65 -7.14 6.61 -106.72 -0.71 -7.85 16 18 C 0.03 0.24 5.77 -67.71 -0.39 -0.15 16 19 H 0.10 0.92 7.90 -51.93 -0.41 0.51 16 20 C -0.16 -1.47 10.15 -26.73 -0.27 -1.74 16 21 C -0.15 -1.26 5.35 -90.62 -0.48 -1.75 16 22 H 0.11 0.90 7.97 -51.93 -0.41 0.49 16 23 C -0.08 -0.58 3.88 -89.81 -0.35 -0.93 16 24 C -0.13 -0.88 7.63 -25.92 -0.20 -1.08 16 25 C -0.15 -0.93 8.08 -25.92 -0.21 -1.14 16 26 C -0.14 -0.97 7.45 -25.92 -0.19 -1.17 16 27 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.07 1.63 6.76 -51.92 -0.35 1.28 16 29 H 0.05 0.81 6.37 -51.93 -0.33 0.48 16 30 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 31 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 34 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 35 H 0.37 5.05 9.05 45.56 0.41 5.46 16 36 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.34 3.65 8.68 -39.29 -0.34 3.31 16 39 H 0.09 0.72 8.13 -51.93 -0.42 0.29 16 40 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.09 0.62 8.07 -51.93 -0.42 0.21 16 42 H 0.08 0.54 7.98 -51.93 -0.41 0.12 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 LS Contribution 375.65 15.07 5.66 5.66 Total: -1.00 -30.91 375.65 -11.02 -41.93 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -8.00 Total: 4.11 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -2.08 Total: -12.55 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: -1.12 Total: -46.94 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -0.46 Total: -9.15 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.91 -11.02 -41.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120519376.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.785 kcal (2) G-P(sol) polarization free energy of solvation -30.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds