Wall clock time and date at job start Tue Mar 31 2020 05:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46893 * 109.47338 * 2 1 4 4 C 1.46907 * 111.00040 * 286.31270 * 3 2 1 5 5 C 1.53001 * 109.47178 * 79.71234 * 4 3 2 6 6 C 1.46909 * 111.00129 * 162.35938 * 3 2 1 7 7 H 1.08994 * 109.46788 * 309.99683 * 6 3 2 8 8 C 1.53001 * 109.46982 * 70.00304 * 6 3 2 9 9 C 1.52996 * 109.46764 * 180.02562 * 8 6 3 10 10 C 1.53004 * 109.47066 * 299.99514 * 9 8 6 11 11 H 1.09003 * 109.47035 * 180.02562 * 10 9 8 12 12 N 1.46498 * 109.47017 * 300.00158 * 10 9 8 13 13 C 1.34774 * 120.00063 * 274.99873 * 12 10 9 14 14 O 1.21276 * 120.00421 * 0.02562 * 13 12 10 15 15 C 1.50707 * 119.99866 * 180.02562 * 13 12 10 16 16 C 1.50701 * 109.47085 * 179.97438 * 15 13 12 17 17 H 1.08001 * 119.99730 * 0.02562 * 16 15 13 18 18 C 1.37871 * 119.99944 * 180.02562 * 16 15 13 19 19 N 1.31516 * 119.99977 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00004 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47539 * 89.99500 * 20 18 16 22 22 H 1.48503 * 109.47144 * 209.99974 * 20 18 16 23 23 H 1.48504 * 109.47144 * 329.99432 * 20 18 16 24 24 C 1.52999 * 109.47117 * 60.00249 * 10 9 8 25 25 C 1.52998 * 109.46972 * 190.00165 * 6 3 2 26 26 H 1.09001 * 109.47017 * 321.44639 * 1 2 3 27 27 H 1.09000 * 109.46931 * 81.44233 * 1 2 3 28 28 H 1.08993 * 109.47163 * 201.44274 * 1 2 3 29 29 H 1.09009 * 109.47250 * 240.00050 * 2 1 3 30 30 H 1.08998 * 109.47007 * 120.00436 * 2 1 3 31 31 H 1.09005 * 109.46749 * 199.71030 * 4 3 2 32 32 H 1.09000 * 109.46780 * 319.70952 * 4 3 2 33 33 H 1.08992 * 109.46851 * 169.42198 * 5 4 3 34 34 H 1.08997 * 109.46990 * 289.42685 * 5 4 3 35 35 H 1.09001 * 109.46906 * 49.42287 * 5 4 3 36 36 H 1.09002 * 109.46491 * 300.00039 * 8 6 3 37 37 H 1.08992 * 109.47199 * 59.99714 * 8 6 3 38 38 H 1.09003 * 109.47294 * 179.97438 * 9 8 6 39 39 H 1.09002 * 109.47837 * 59.99804 * 9 8 6 40 40 H 0.97005 * 119.99545 * 95.00166 * 12 10 9 41 41 H 1.08997 * 109.47220 * 300.00056 * 15 13 12 42 42 H 1.08998 * 109.47170 * 60.00319 * 15 13 12 43 43 H 0.97005 * 119.99712 * 179.97438 * 19 18 16 44 44 H 1.08995 * 109.46986 * 180.02562 * 24 10 9 45 45 H 1.09003 * 109.46916 * 59.99833 * 24 10 9 46 46 H 1.09003 * 109.47420 * 299.99841 * 25 6 3 47 47 H 1.08999 * 109.47559 * 59.99885 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8320 2.0097 -1.3163 5 6 0.3780 2.4626 -1.4632 6 6 3.4275 1.4456 0.4156 7 1 3.5578 0.8836 1.3404 8 6 4.3088 0.8393 -0.6783 9 6 5.7748 0.9020 -0.2452 10 6 6.1770 2.3603 -0.0160 11 1 7.2216 2.4050 0.2921 12 7 6.0023 3.1161 -1.2588 13 6 6.9817 3.1264 -2.1846 14 8 8.0075 2.5098 -1.9891 15 6 6.8021 3.9044 -3.4628 16 6 8.0324 3.7534 -4.3198 17 1 8.8613 3.1537 -3.9737 18 6 8.0999 4.3808 -5.5456 19 7 7.0903 5.1107 -5.9672 20 14 9.6247 4.1931 -6.6083 21 1 9.4659 3.0151 -7.4983 22 1 9.8073 5.4150 -7.4323 23 1 10.8132 4.0002 -5.7391 24 6 5.2957 2.9666 1.0778 25 6 3.8293 2.9040 0.6444 26 1 -0.3633 0.8037 0.6405 27 1 -0.3633 0.1529 -1.0162 28 1 -0.3633 -0.9565 0.3757 29 1 1.8934 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.4922 2.8724 -1.4064 32 1 2.0686 1.2879 -2.0980 33 1 0.2802 3.0880 -2.3505 34 1 -0.2664 1.5891 -1.5615 35 1 0.0845 3.0334 -0.5822 36 1 4.0224 -0.1997 -0.8412 37 1 4.1784 1.4014 -1.6030 38 1 6.4027 0.4697 -1.0243 39 1 5.9049 0.3396 0.6795 40 1 5.1816 3.6090 -1.4153 41 1 5.9346 3.5231 -4.0014 42 1 6.6500 4.9580 -3.2285 43 1 7.1379 5.5524 -6.8296 44 1 5.5820 4.0056 1.2407 45 1 5.4258 2.4042 2.0025 46 1 3.6989 3.4662 -0.2804 47 1 3.2014 3.3360 1.4237 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143206974.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:14 Heat of formation + Delta-G solvation = -52.585044 kcal Electronic energy + Delta-G solvation = -23539.253259 eV Core-core repulsion = 20335.138886 eV Total energy + Delta-G solvation = -3204.114374 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.19067 -38.43621 -36.45097 -32.92643 -32.87383 -31.31253 -30.74938 -30.60266 -28.76888 -27.15369 -23.68498 -23.21180 -22.98385 -22.09740 -20.59687 -19.91089 -18.57076 -16.46045 -16.31127 -16.23154 -15.48144 -15.29410 -14.94346 -14.75767 -14.46846 -14.01189 -13.65853 -13.28934 -12.93071 -12.90775 -12.82437 -12.64163 -12.32289 -12.26085 -12.04406 -11.88140 -11.71178 -11.51349 -11.37583 -11.23800 -11.05536 -10.76437 -10.65373 -10.57613 -10.32264 -10.28365 -10.12485 -9.92143 -9.25342 -8.59343 -8.46063 -8.39367 -8.31107 -6.04430 -4.03627 3.35400 3.40590 3.47821 3.73898 3.76779 3.98348 4.50415 4.63776 4.74010 4.77741 4.96699 5.04050 5.11365 5.18812 5.26433 5.29245 5.33909 5.38068 5.42995 5.46764 5.53010 5.57245 5.63019 5.66127 5.72967 5.75715 5.89561 5.94038 6.02783 6.08689 6.11470 6.12807 6.18405 6.27098 6.31456 6.44447 6.50097 7.02272 7.05345 7.13521 7.24168 7.34928 7.97640 8.09828 8.48741 9.07430 9.29492 9.61581 11.08000 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020941 B = 0.003964 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.759607 B = 7061.763882 C = 7757.785669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 N -0.532 5.532 4 C 0.044 3.956 5 C -0.156 4.156 6 C 0.086 3.914 7 H 0.079 0.921 8 C -0.148 4.148 9 C -0.125 4.125 10 C 0.144 3.856 11 H 0.082 0.918 12 N -0.741 5.741 13 C 0.514 3.486 14 O -0.547 6.547 15 C 0.005 3.995 16 C -0.506 4.506 17 H 0.075 0.925 18 C 0.054 3.946 19 N -0.901 5.901 20 Si 0.900 3.100 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.272 1.272 24 C -0.124 4.124 25 C -0.110 4.110 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.035 0.965 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.038 0.962 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.392 0.608 41 H 0.045 0.955 42 H 0.046 0.954 43 H 0.261 0.739 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.065 0.935 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.255 -7.045 14.380 21.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.078 4.078 3 N -0.255 5.255 4 C -0.084 4.084 5 C -0.214 4.214 6 C -0.022 4.022 7 H 0.097 0.903 8 C -0.187 4.187 9 C -0.164 4.164 10 C 0.039 3.961 11 H 0.100 0.900 12 N -0.396 5.396 13 C 0.304 3.696 14 O -0.423 6.423 15 C -0.035 4.035 16 C -0.545 4.545 17 H 0.093 0.907 18 C -0.146 4.146 19 N -0.541 5.541 20 Si 0.728 3.272 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.197 1.197 24 C -0.162 4.162 25 C -0.148 4.148 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.226 0.774 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.835 -7.119 14.709 21.411 hybrid contribution 0.795 -0.322 -1.368 1.615 sum -13.039 -7.440 13.340 20.083 Atomic orbital electron populations 1.22053 0.95188 1.01616 1.02039 1.22102 0.95965 0.89123 1.00619 1.62358 1.18152 1.17063 1.27960 1.22193 0.97824 0.99122 0.89215 1.22090 0.96155 1.01524 1.01588 1.21789 0.85979 0.96830 0.97634 0.90278 1.22187 0.95853 1.00692 0.99936 1.21839 0.95900 0.97069 1.01591 1.20763 0.99826 0.90555 0.84983 0.89953 1.46418 1.20665 1.53403 1.19107 1.21968 0.81819 0.80293 0.85494 1.90523 1.28551 1.44413 1.78825 1.19227 0.99900 0.95690 0.88658 1.21170 1.01643 1.30285 1.01392 0.90737 1.25005 0.96670 0.95157 0.97801 1.69963 1.30913 1.32645 1.20593 0.86445 0.83265 0.77361 0.80111 1.20657 1.21276 1.19678 1.21807 0.94618 1.01683 0.98140 1.21591 0.95634 0.95658 1.01948 0.91489 0.92301 0.92931 0.94658 0.91342 0.90551 0.94401 0.92692 0.92024 0.92009 0.92573 0.91115 0.91283 0.91845 0.77360 0.93722 0.93611 0.92959 0.91091 0.90893 0.91664 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.60 37.16 0.32 -0.88 16 2 C 0.05 0.46 5.08 -3.83 -0.02 0.44 16 3 N -0.53 -5.33 4.38 -226.64 -0.99 -6.32 16 4 C 0.04 0.46 4.23 -3.82 -0.02 0.45 16 5 C -0.16 -1.45 9.28 37.16 0.34 -1.10 16 6 C 0.09 0.88 2.17 -67.71 -0.15 0.73 16 7 H 0.08 0.78 7.85 -51.93 -0.41 0.37 16 8 C -0.15 -1.77 4.43 -26.73 -0.12 -1.89 16 9 C -0.12 -1.67 5.60 -26.73 -0.15 -1.82 16 10 C 0.14 2.05 2.78 -67.93 -0.19 1.86 16 11 H 0.08 1.34 7.58 -51.93 -0.39 0.95 16 12 N -0.74 -12.47 4.23 -53.80 -0.23 -12.69 16 13 C 0.51 11.63 7.79 -10.98 -0.09 11.55 16 14 O -0.55 -14.20 15.12 5.56 0.08 -14.12 16 15 C 0.00 0.12 5.46 -29.03 -0.16 -0.04 16 16 C -0.51 -14.82 8.92 -34.44 -0.31 -15.13 16 17 H 0.07 2.28 6.75 -52.49 -0.35 1.92 16 18 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 20 Si 0.90 22.32 29.54 -169.99 -5.02 17.30 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 24 C -0.12 -1.33 5.61 -26.71 -0.15 -1.47 16 25 C -0.11 -1.12 5.01 -26.71 -0.13 -1.25 16 26 H 0.07 0.56 8.03 -51.93 -0.42 0.14 16 27 H 0.06 0.47 5.77 -51.93 -0.30 0.17 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.35 7.07 -51.92 -0.37 -0.02 16 30 H 0.07 0.59 7.77 -51.93 -0.40 0.19 16 31 H 0.08 0.85 5.70 -51.93 -0.30 0.55 16 32 H 0.04 0.43 7.24 -51.93 -0.38 0.06 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.53 4.82 -51.93 -0.25 0.28 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.66 7.11 -51.93 -0.37 0.29 16 37 H 0.07 0.97 6.24 -51.93 -0.32 0.65 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.39 5.82 6.87 -40.82 -0.28 5.54 16 41 H 0.04 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.71 4.60 -51.93 -0.24 0.47 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 351.42 15.07 5.30 5.30 Total: -1.00 -31.59 351.42 -9.17 -40.76 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -8.14 Total: 2.72 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -0.91 Total: -7.11 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: -0.48 Total: -44.86 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.08 Total: -14.12 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.59 -9.17 -40.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143206974.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.826 kcal (2) G-P(sol) polarization free energy of solvation -31.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds