Wall clock time and date at job start Tue Mar 31 2020 05:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46494 * 109.46882 * 2 1 4 4 C 1.36943 * 120.00432 * 274.04513 * 3 2 1 5 5 H 1.07993 * 119.99937 * 174.71086 * 4 3 2 6 6 C 1.38813 * 119.99515 * 354.70551 * 4 3 2 7 7 N 1.31616 * 120.00152 * 31.38919 * 6 4 3 8 8 Si 1.86802 * 119.99741 * 211.38696 * 6 4 3 9 9 H 1.48497 * 109.47422 * 84.99625 * 8 6 4 10 10 H 1.48500 * 109.47066 * 204.99789 * 8 6 4 11 11 H 1.48505 * 109.46999 * 324.99821 * 8 6 4 12 12 C 1.46500 * 120.00022 * 94.04447 * 3 2 1 13 13 H 1.08997 * 109.47915 * 179.97438 * 12 3 2 14 14 C 1.53004 * 109.47123 * 59.99600 * 12 3 2 15 15 C 1.52995 * 109.47309 * 300.00049 * 12 3 2 16 16 N 1.46504 * 109.47198 * 304.99598 * 15 12 3 17 17 C 1.34767 * 120.00312 * 179.97438 * 16 15 12 18 18 O 1.21282 * 120.00234 * 0.02562 * 17 16 15 19 19 C 1.50705 * 120.00232 * 180.02562 * 17 16 15 20 20 C 1.53004 * 109.46795 * 60.00376 * 19 17 16 21 21 C 1.52999 * 109.46867 * 180.02562 * 20 19 17 22 22 C 1.53000 * 109.47120 * 299.99659 * 21 20 19 23 23 C 1.53000 * 109.47119 * 60.00069 * 22 21 20 24 24 C 1.52995 * 109.47262 * 300.00266 * 23 22 21 25 25 H 1.09001 * 109.46823 * 299.99595 * 1 2 3 26 26 H 1.09004 * 109.47111 * 59.99633 * 1 2 3 27 27 H 1.08995 * 109.47085 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46823 * 240.00405 * 2 1 3 29 29 H 1.08992 * 109.46938 * 120.00031 * 2 1 3 30 30 H 0.96998 * 120.00096 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47600 * 179.97438 * 14 12 3 32 32 H 1.08996 * 109.47256 * 300.00738 * 14 12 3 33 33 H 1.09005 * 109.46812 * 60.00111 * 14 12 3 34 34 H 1.09006 * 109.47667 * 184.99701 * 15 12 3 35 35 H 1.08999 * 109.47455 * 64.99901 * 15 12 3 36 36 H 0.97000 * 119.99719 * 0.02562 * 16 15 12 37 37 H 1.08998 * 109.47114 * 300.00157 * 19 17 16 38 38 H 1.08997 * 109.46814 * 300.00019 * 20 19 17 39 39 H 1.08998 * 109.47468 * 59.99998 * 20 19 17 40 40 H 1.08998 * 109.47031 * 179.97438 * 21 20 19 41 41 H 1.08998 * 109.47338 * 59.99599 * 21 20 19 42 42 H 1.08998 * 109.46966 * 300.00168 * 22 21 20 43 43 H 1.09001 * 109.47187 * 180.02562 * 22 21 20 44 44 H 1.08997 * 109.46961 * 180.02562 * 23 22 21 45 45 H 1.08998 * 109.47121 * 60.00194 * 23 22 21 46 46 H 1.09008 * 109.47024 * 300.00043 * 24 23 22 47 47 H 1.08998 * 109.47225 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1677 2.0547 -1.1830 5 1 2.4453 3.0984 -1.1788 6 6 1.9624 1.3958 -2.3874 7 7 1.0859 0.4168 -2.4609 8 14 2.9302 1.8989 -3.9039 9 1 4.2408 1.2008 -3.9088 10 1 2.1675 1.5286 -5.1231 11 1 3.1515 3.3672 -3.8854 12 6 2.3468 2.0420 1.2656 13 1 2.6912 3.0569 1.0670 14 6 3.4518 1.2592 1.9778 15 6 1.1022 2.0900 2.1540 16 7 0.0068 2.7348 1.4255 17 6 -1.1957 2.8882 2.0143 18 8 -1.3711 2.4928 3.1473 19 6 -2.3227 3.5510 1.2647 20 6 -2.6312 2.7521 -0.0032 21 6 -3.7749 3.4253 -0.7645 22 6 -5.0199 3.4734 0.1234 23 6 -4.7115 4.2722 1.3914 24 6 -3.5678 3.5990 2.1527 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 0.9422 -0.0434 -3.3026 31 1 3.6966 1.7511 2.9192 32 1 3.1079 0.2442 2.1764 33 1 4.3386 1.2250 1.3449 34 1 1.3222 2.6589 3.0574 35 1 0.8103 1.0755 2.4257 36 1 0.1469 3.0507 0.5192 37 1 -2.0312 4.5655 0.9931 38 1 -1.7443 2.7182 -0.6360 39 1 -2.9227 1.7375 0.2684 40 1 -3.9943 2.8565 -1.6680 41 1 -3.4830 4.4397 -1.0362 42 1 -5.3118 2.4590 0.3951 43 1 -5.8348 3.9526 -0.4191 44 1 -5.5983 4.3060 2.0242 45 1 -4.4196 5.2866 1.1197 46 1 -3.8597 2.5845 2.4244 47 1 -3.3477 4.1684 3.0557 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151637963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:58 Heat of formation + Delta-G solvation = -37.591456 kcal Electronic energy + Delta-G solvation = -24347.392981 eV Core-core repulsion = 21143.928778 eV Total energy + Delta-G solvation = -3203.464203 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.77642 -37.64207 -36.72468 -33.83547 -32.24438 -30.85107 -30.55138 -30.09339 -28.41172 -25.83931 -23.79753 -22.98952 -22.38577 -21.70330 -20.02471 -19.40164 -18.92837 -16.94014 -16.67001 -15.62814 -15.31945 -15.05549 -14.41880 -14.08949 -14.00042 -13.86588 -13.50711 -12.99905 -12.64480 -12.53346 -12.39609 -12.25459 -12.05156 -11.92859 -11.78093 -11.45489 -11.15672 -11.07465 -10.99355 -10.77973 -10.72423 -10.60684 -10.49624 -10.30093 -10.26571 -9.93717 -9.82334 -9.62555 -9.28041 -9.15022 -8.36651 -8.22502 -7.02063 -5.86741 -3.06706 3.17977 3.36972 3.45796 3.48474 3.83589 4.45490 4.82154 4.85365 4.91559 5.19970 5.30852 5.35017 5.40106 5.47247 5.55136 5.59070 5.61655 5.64576 5.76308 5.91231 5.97071 6.09521 6.14517 6.15539 6.19620 6.21850 6.31818 6.33114 6.35781 6.40732 6.52881 6.58979 6.64711 6.73468 6.87913 7.01258 7.09505 7.18372 7.24291 7.66033 7.81980 8.12801 8.21554 8.29053 8.83336 9.19459 9.83547 10.29254 11.16572 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015711 B = 0.006095 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.747288 B = 4593.166361 C = 5728.065727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.165 3.835 3 N -0.593 5.593 4 C -0.262 4.262 5 H 0.075 0.925 6 C 0.011 3.989 7 N -0.879 5.879 8 Si 0.878 3.122 9 H -0.290 1.290 10 H -0.295 1.295 11 H -0.283 1.283 12 C 0.161 3.839 13 H 0.067 0.933 14 C -0.158 4.158 15 C 0.105 3.895 16 N -0.701 5.701 17 C 0.512 3.488 18 O -0.563 6.563 19 C -0.104 4.104 20 C -0.110 4.110 21 C -0.116 4.116 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.096 4.096 25 H 0.021 0.979 26 H 0.088 0.912 27 H 0.011 0.989 28 H 0.083 0.917 29 H 0.005 0.995 30 H 0.252 0.748 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.411 0.589 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.847 5.591 5.234 10.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.041 3.959 3 N -0.315 5.315 4 C -0.390 4.390 5 H 0.093 0.907 6 C -0.188 4.188 7 N -0.523 5.523 8 Si 0.708 3.292 9 H -0.218 1.218 10 H -0.222 1.222 11 H -0.209 1.209 12 C 0.052 3.948 13 H 0.085 0.915 14 C -0.217 4.217 15 C -0.021 4.021 16 N -0.351 5.351 17 C 0.298 3.702 18 O -0.443 6.443 19 C -0.125 4.125 20 C -0.148 4.148 21 C -0.154 4.154 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.134 4.134 25 H 0.040 0.960 26 H 0.107 0.893 27 H 0.030 0.970 28 H 0.101 0.899 29 H 0.023 0.977 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.248 0.752 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.997 5.207 5.871 10.514 hybrid contribution 0.606 0.257 -1.326 1.481 sum -6.391 5.465 4.545 9.558 Atomic orbital electron populations 1.22432 0.99105 0.97936 1.01450 1.20885 0.92580 0.84514 0.97965 1.44220 1.75668 1.11199 1.00432 1.19186 1.41680 0.94776 0.83309 0.90730 1.24673 0.98736 0.98257 0.97097 1.70276 1.30344 1.26597 1.25095 0.86662 0.81353 0.77930 0.83258 1.21764 1.22224 1.20884 1.20543 0.91250 0.96329 0.86637 0.91499 1.22185 0.99710 1.00622 0.99232 1.21973 0.88368 0.97211 0.94567 1.45916 1.10665 1.59506 1.19028 1.20567 0.83707 0.79265 0.86614 1.90624 1.83036 1.51416 1.19231 1.21305 0.94211 1.00391 0.96621 1.21526 0.99544 0.98900 0.94816 1.21508 0.94834 1.00882 0.98134 1.21566 0.97613 1.00459 0.96194 1.21552 0.98164 0.99181 0.96675 1.21307 0.93058 1.01749 0.97316 0.95962 0.89290 0.96950 0.89888 0.97658 0.93774 0.93705 0.93003 0.92329 0.93104 0.92215 0.75232 0.89230 0.90177 0.91560 0.91685 0.92019 0.92033 0.92370 0.92122 0.92145 0.91417 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.27 37.16 0.34 -3.00 16 2 C 0.17 3.76 5.01 -4.04 -0.02 3.74 16 3 N -0.59 -13.01 1.92 -165.67 -0.32 -13.33 16 4 C -0.26 -6.33 9.38 -15.06 -0.14 -6.47 16 5 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 6 C 0.01 0.27 4.97 -17.43 -0.09 0.18 16 7 N -0.88 -22.75 8.40 55.49 0.47 -22.28 16 8 Si 0.88 20.28 29.65 -169.99 -5.04 15.24 16 9 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.30 -7.01 7.11 56.52 0.40 -6.60 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 12 C 0.16 2.99 2.87 -67.93 -0.19 2.80 16 13 H 0.07 1.23 7.78 -51.93 -0.40 0.82 16 14 C -0.16 -2.61 9.18 37.16 0.34 -2.27 16 15 C 0.11 1.90 4.32 -4.04 -0.02 1.89 16 16 N -0.70 -12.54 3.88 -60.29 -0.23 -12.78 16 17 C 0.51 9.14 6.91 -10.99 -0.08 9.07 16 18 O -0.56 -11.73 15.98 5.56 0.09 -11.64 16 19 C -0.10 -1.50 2.53 -91.77 -0.23 -1.73 16 20 C -0.11 -1.60 5.10 -26.73 -0.14 -1.74 16 21 C -0.12 -1.41 5.92 -26.73 -0.16 -1.57 16 22 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 23 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 24 C -0.10 -1.29 4.49 -26.73 -0.12 -1.41 16 25 H 0.02 0.47 4.84 -51.93 -0.25 0.22 16 26 H 0.09 2.18 6.30 -51.93 -0.33 1.85 16 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.08 2.14 5.84 -51.93 -0.30 1.83 16 29 H 0.01 0.11 6.43 -51.93 -0.33 -0.22 16 30 H 0.25 6.50 8.31 -40.82 -0.34 6.16 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.88 6.66 -51.93 -0.35 0.53 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 1.19 6.92 -51.93 -0.36 0.83 16 36 H 0.41 7.58 7.31 -40.82 -0.30 7.28 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.32 7.56 -51.93 -0.39 0.93 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.07 0.99 8.10 -51.92 -0.42 0.57 16 47 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 LS Contribution 352.63 15.07 5.31 5.31 Total: -1.00 -26.55 352.63 -9.01 -35.56 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -8.48 Total: 7.33 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -0.81 Total: -3.42 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: -0.09 Total: -48.38 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.04 Total: 15.24 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -26.55 -9.01 -35.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151637963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.031 kcal (2) G-P(sol) polarization free energy of solvation -26.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds