Wall clock time and date at job start Tue Mar 31 2020 05:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46496 * 109.47322 * 2 1 4 4 C 1.36940 * 120.00284 * 275.91989 * 3 2 1 5 5 H 1.08002 * 119.99609 * 34.06877 * 4 3 2 6 6 C 1.38807 * 119.99979 * 214.07673 * 4 3 2 7 7 N 1.31616 * 120.00500 * 17.03636 * 6 4 3 8 8 Si 1.86803 * 119.99938 * 197.03660 * 6 4 3 9 9 H 1.48499 * 109.47366 * 59.99927 * 8 6 4 10 10 H 1.48496 * 109.47319 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46850 * 299.99943 * 8 6 4 12 12 C 1.46499 * 120.00301 * 95.91246 * 3 2 1 13 13 H 1.08997 * 109.47623 * 177.14702 * 12 3 2 14 14 C 1.53006 * 109.46945 * 57.15105 * 12 3 2 15 15 C 1.53003 * 109.47343 * 297.15365 * 12 3 2 16 16 N 1.46497 * 109.47123 * 304.99783 * 15 12 3 17 17 C 1.34780 * 120.00301 * 179.97438 * 16 15 12 18 18 O 1.21272 * 119.99653 * 359.97438 * 17 16 15 19 19 C 1.50694 * 119.99666 * 179.97438 * 17 16 15 20 20 C 1.53012 * 109.46883 * 179.97438 * 19 17 16 21 21 C 1.54262 * 110.02866 * 292.90989 * 20 19 17 22 22 C 1.54973 * 104.15783 * 217.13306 * 21 20 19 23 23 C 1.54887 * 102.77401 * 37.88943 * 22 21 20 24 24 C 1.53869 * 110.03258 * 175.69107 * 20 19 17 25 25 H 1.08992 * 109.47366 * 59.99905 * 1 2 3 26 26 H 1.08997 * 109.47106 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46769 * 299.99613 * 1 2 3 28 28 H 1.09001 * 109.47464 * 120.00335 * 2 1 3 29 29 H 1.09004 * 109.47465 * 240.00154 * 2 1 3 30 30 H 0.97004 * 120.00641 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.47046 * 300.00201 * 14 12 3 32 32 H 1.08996 * 109.46858 * 59.99980 * 14 12 3 33 33 H 1.09005 * 109.47354 * 180.02562 * 14 12 3 34 34 H 1.08998 * 109.47129 * 64.99612 * 15 12 3 35 35 H 1.08997 * 109.47260 * 184.99292 * 15 12 3 36 36 H 0.97001 * 119.99688 * 359.97438 * 16 15 12 37 37 H 1.09000 * 109.47302 * 299.99264 * 19 17 16 38 38 H 1.09001 * 109.47810 * 60.00401 * 19 17 16 39 39 H 1.08996 * 110.01384 * 54.29706 * 20 19 17 40 40 H 1.09003 * 110.49289 * 335.77920 * 21 20 19 41 41 H 1.08999 * 110.48672 * 98.42629 * 21 20 19 42 42 H 1.08999 * 110.71774 * 279.57799 * 22 21 20 43 43 H 1.09000 * 110.92098 * 156.29250 * 22 21 20 44 44 H 1.09000 * 110.48330 * 203.40369 * 23 22 21 45 45 H 1.09003 * 110.59890 * 80.81834 * 23 22 21 46 46 H 1.09000 * 110.03074 * 238.57063 * 24 20 19 47 47 H 1.08996 * 110.03399 * 359.95168 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1313 2.0675 -1.1796 5 1 1.4231 1.8926 -1.9760 6 6 3.1560 2.9879 -1.3516 7 7 4.1989 2.9695 -0.5489 8 14 3.0550 4.2527 -2.7226 9 1 1.8459 5.0935 -2.5324 10 1 4.2651 5.1129 -2.6927 11 1 2.9735 3.5575 -4.0323 12 6 2.3857 2.0283 1.2619 13 1 2.7713 3.0274 1.0592 14 6 3.4622 1.1993 1.9656 15 6 1.1519 2.1304 2.1610 16 7 0.0790 2.8210 1.4412 17 6 -1.1108 3.0263 2.0400 18 8 -1.2934 2.6389 3.1746 19 6 -2.2142 3.7372 1.2997 20 6 -3.4486 3.8381 2.1982 21 6 -4.0357 2.4338 2.4490 22 6 -5.5689 2.6596 2.4551 23 6 -5.7633 3.7200 1.3430 24 6 -4.5465 4.6558 1.4956 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 4.9148 3.6129 -0.6689 31 1 3.0767 0.2001 2.1683 32 1 4.3412 1.1266 1.3251 33 1 3.7354 1.6805 2.9048 34 1 0.8191 1.1296 2.4362 35 1 1.4040 2.6899 3.0617 36 1 0.2250 3.1305 0.5335 37 1 -1.8813 4.7382 1.0253 38 1 -2.4661 3.1782 0.3985 39 1 -3.1829 4.3065 3.1458 40 1 -3.7537 1.7532 1.6456 41 1 -3.7024 2.0475 3.4122 42 1 -5.8979 3.0464 3.4195 43 1 -6.0987 1.7395 2.2084 44 1 -6.6906 4.2712 1.4995 45 1 -5.7617 3.2493 0.3598 46 1 -4.8143 5.5205 2.1027 47 1 -4.1997 4.9814 0.5149 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151643514.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:00 Heat of formation + Delta-G solvation = -47.112519 kcal Electronic energy + Delta-G solvation = -23776.424198 eV Core-core repulsion = 20572.547131 eV Total energy + Delta-G solvation = -3203.877067 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.55013 -37.83050 -36.72523 -33.54348 -31.91372 -31.58648 -30.77252 -28.62539 -28.18936 -26.50050 -24.39105 -23.92722 -21.67622 -20.70964 -19.96266 -19.40326 -19.10477 -17.08657 -16.54195 -15.61175 -15.49941 -14.99324 -14.79467 -14.50849 -14.23826 -13.59348 -13.31300 -13.17056 -12.92765 -12.67183 -12.29985 -12.26268 -11.82416 -11.75591 -11.46462 -11.19994 -11.07036 -11.03778 -10.98569 -10.94213 -10.80682 -10.73703 -10.65104 -10.52653 -10.34636 -10.32254 -10.06333 -9.64075 -9.43946 -9.21123 -8.52102 -8.28968 -6.65832 -5.89091 -3.38978 3.20685 3.30326 3.37322 3.38459 3.88226 4.40578 4.63004 4.65205 4.77696 5.25515 5.25670 5.34161 5.39891 5.42334 5.47324 5.65923 5.66341 5.74826 5.85160 5.87842 5.90727 5.95203 6.06438 6.10414 6.12510 6.23161 6.27972 6.30751 6.39534 6.41203 6.50388 6.54411 6.55930 6.64120 6.68330 6.83353 6.91773 7.15748 7.17481 7.48187 7.56575 7.74787 8.27295 8.43401 8.86678 9.15289 9.76779 10.34691 11.17015 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017970 B = 0.004825 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.740917 B = 5802.255959 C = 6460.750527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.140 3.860 3 N -0.581 5.581 4 C -0.263 4.263 5 H 0.062 0.938 6 C 0.012 3.988 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.283 1.283 10 H -0.291 1.291 11 H -0.282 1.282 12 C 0.174 3.826 13 H 0.101 0.899 14 C -0.144 4.144 15 C 0.103 3.897 16 N -0.703 5.703 17 C 0.504 3.496 18 O -0.560 6.560 19 C -0.136 4.136 20 C -0.074 4.074 21 C -0.111 4.111 22 C -0.127 4.127 23 C -0.124 4.124 24 C -0.123 4.123 25 H 0.046 0.954 26 H 0.032 0.968 27 H 0.051 0.949 28 H 0.037 0.963 29 H 0.040 0.960 30 H 0.255 0.745 31 H 0.031 0.969 32 H 0.074 0.926 33 H 0.033 0.967 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.410 0.590 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.192 1.189 3.491 13.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 N -0.303 5.303 4 C -0.393 4.393 5 H 0.080 0.920 6 C -0.188 4.188 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.210 1.210 10 H -0.217 1.217 11 H -0.209 1.209 12 C 0.066 3.934 13 H 0.119 0.881 14 C -0.203 4.203 15 C -0.023 4.023 16 N -0.354 5.354 17 C 0.290 3.710 18 O -0.440 6.440 19 C -0.176 4.176 20 C -0.093 4.093 21 C -0.149 4.149 22 C -0.165 4.165 23 C -0.162 4.162 24 C -0.160 4.160 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.247 0.753 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.109 1.012 4.270 13.824 hybrid contribution 0.202 0.812 -1.238 1.494 sum -12.907 1.824 3.032 13.383 Atomic orbital electron populations 1.22419 1.00055 0.98896 1.01451 1.20762 0.91666 0.87509 0.98696 1.43847 1.75914 1.08232 1.02278 1.19030 1.07763 1.18828 0.93697 0.91992 1.25165 0.94487 1.01348 0.97787 1.69992 1.07223 1.36316 1.39715 0.86475 0.76976 0.81617 0.82266 1.20965 1.21692 1.20864 1.20524 0.89148 0.99371 0.84316 0.88102 1.22002 1.01081 0.98149 0.99098 1.22122 0.89340 0.95579 0.95264 1.46011 1.12394 1.57982 1.18993 1.20595 0.83615 0.79869 0.86936 1.90619 1.81949 1.52537 1.18889 1.21838 0.94444 1.01647 0.99682 1.21490 0.92977 0.96421 0.98371 1.22379 0.93739 0.96291 1.02479 1.22542 0.96894 0.98497 0.98555 1.22347 0.97667 0.97107 0.99055 1.22245 0.95148 0.98060 1.00591 0.93509 0.94930 0.93028 0.94494 0.94185 0.93489 0.95029 0.90677 0.94747 0.93077 0.93292 0.75321 0.89405 0.89181 0.90496 0.92058 0.90866 0.91828 0.91981 0.92146 0.91772 0.91964 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 9.95 37.15 0.37 -2.67 16 2 C 0.14 2.83 5.75 -4.05 -0.02 2.81 16 3 N -0.58 -12.99 1.88 -165.66 -0.31 -13.30 16 4 C -0.26 -6.47 9.07 -15.06 -0.14 -6.61 16 5 H 0.06 1.53 7.89 -52.49 -0.41 1.12 16 6 C 0.01 0.31 4.86 -17.43 -0.08 0.23 16 7 N -0.89 -23.52 10.90 55.49 0.61 -22.91 16 8 Si 0.90 20.11 29.59 -169.99 -5.03 15.08 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 C 0.17 3.72 1.95 -67.93 -0.13 3.59 16 13 H 0.10 2.46 5.94 -51.93 -0.31 2.15 16 14 C -0.14 -2.94 9.05 37.16 0.34 -2.60 16 15 C 0.10 2.00 4.36 -4.04 -0.02 1.98 16 16 N -0.70 -12.78 4.28 -60.30 -0.26 -13.04 16 17 C 0.50 8.70 7.56 -10.99 -0.08 8.61 16 18 O -0.56 -11.17 14.78 5.56 0.08 -11.09 16 19 C -0.14 -1.83 4.83 -27.88 -0.13 -1.97 16 20 C -0.07 -0.93 2.55 -89.50 -0.23 -1.16 16 21 C -0.11 -1.43 5.40 -25.03 -0.14 -1.56 16 22 C -0.13 -1.32 6.91 -24.69 -0.17 -1.49 16 23 C -0.12 -1.19 6.83 -25.07 -0.17 -1.36 16 24 C -0.12 -1.26 6.46 -25.62 -0.17 -1.43 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.96 5.32 -51.93 -0.28 0.68 16 28 H 0.04 0.72 6.29 -51.93 -0.33 0.40 16 29 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 30 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 31 H 0.03 0.60 6.56 -51.93 -0.34 0.26 16 32 H 0.07 1.73 7.69 -51.93 -0.40 1.33 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 1.02 6.98 -51.93 -0.36 0.66 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.41 7.67 7.74 -40.82 -0.32 7.36 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.09 1.14 8.02 -51.93 -0.42 0.72 16 39 H 0.08 1.07 7.95 -51.93 -0.41 0.65 16 40 H 0.06 0.82 7.77 -51.93 -0.40 0.42 16 41 H 0.07 1.07 7.63 -51.93 -0.40 0.67 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.64 7.67 -51.93 -0.40 0.24 16 LS Contribution 359.54 15.07 5.42 5.42 Total: -1.00 -26.64 359.54 -8.82 -35.46 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -8.55 Total: 8.02 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -0.78 Total: -3.64 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.04 Total: -49.25 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.09 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.08 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -26.64 -8.82 -35.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151643514.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.650 kcal (2) G-P(sol) polarization free energy of solvation -26.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds