Wall clock time and date at job start Tue Mar 31 2020 05:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.47078 * 2 1 4 4 C 1.36931 * 120.00430 * 275.92007 * 3 2 1 5 5 H 1.08005 * 119.99695 * 34.06908 * 4 3 2 6 6 C 1.38809 * 120.00298 * 214.07825 * 4 3 2 7 7 N 1.31622 * 119.99784 * 17.03612 * 6 4 3 8 8 Si 1.86799 * 120.00271 * 197.04574 * 6 4 3 9 9 H 1.48497 * 109.47516 * 89.99415 * 8 6 4 10 10 H 1.48503 * 109.47239 * 209.99610 * 8 6 4 11 11 H 1.48504 * 109.46768 * 329.99341 * 8 6 4 12 12 C 1.46501 * 119.99522 * 95.91721 * 3 2 1 13 13 H 1.09005 * 109.46750 * 177.14634 * 12 3 2 14 14 C 1.52995 * 109.47156 * 57.15033 * 12 3 2 15 15 C 1.52998 * 109.47103 * 297.14458 * 12 3 2 16 16 N 1.46497 * 109.47622 * 305.00210 * 15 12 3 17 17 C 1.34768 * 120.00288 * 180.02562 * 16 15 12 18 18 O 1.21286 * 120.00126 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00179 * 179.97438 * 17 16 15 20 20 C 1.53005 * 109.47247 * 179.97438 * 19 17 16 21 21 C 1.53004 * 109.46823 * 180.02562 * 20 19 17 22 22 C 1.53774 * 113.61328 * 274.13214 * 21 20 19 23 23 C 1.53954 * 87.02311 * 220.05060 * 22 21 20 24 24 C 1.53783 * 113.60847 * 176.52869 * 21 20 19 25 25 H 1.08994 * 109.47518 * 59.99465 * 1 2 3 26 26 H 1.09003 * 109.47288 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46892 * 299.99785 * 1 2 3 28 28 H 1.09005 * 109.47178 * 240.00915 * 2 1 3 29 29 H 1.08994 * 109.47518 * 120.00535 * 2 1 3 30 30 H 0.96999 * 119.99872 * 180.02562 * 7 6 4 31 31 H 1.09005 * 109.46965 * 299.99469 * 14 12 3 32 32 H 1.08997 * 109.47564 * 59.99762 * 14 12 3 33 33 H 1.09007 * 109.47219 * 180.02562 * 14 12 3 34 34 H 1.08999 * 109.47088 * 65.00781 * 15 12 3 35 35 H 1.09008 * 109.46881 * 185.00128 * 15 12 3 36 36 H 0.97001 * 119.99583 * 0.02562 * 16 15 12 37 37 H 1.08995 * 109.47253 * 299.99845 * 19 17 16 38 38 H 1.09001 * 109.47212 * 59.99635 * 19 17 16 39 39 H 1.08995 * 109.46871 * 300.00082 * 20 19 17 40 40 H 1.08994 * 109.47056 * 59.99999 * 20 19 17 41 41 H 1.08993 * 112.85151 * 45.33562 * 21 20 19 42 42 H 1.08999 * 113.61995 * 334.57138 * 22 21 20 43 43 H 1.09003 * 113.61375 * 105.47734 * 22 21 20 44 44 H 1.08999 * 113.53668 * 270.81834 * 23 22 21 45 45 H 1.09000 * 113.74371 * 139.94422 * 23 22 21 46 46 H 1.08997 * 113.61228 * 254.52737 * 24 21 20 47 47 H 1.08993 * 113.61880 * 25.34980 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1312 2.0676 -1.1795 5 1 1.4230 1.8927 -1.9760 6 6 3.1559 2.9880 -1.3516 7 7 4.1988 2.9695 -0.5488 8 14 3.0548 4.2530 -2.7224 9 1 2.3770 5.4748 -2.2195 10 1 4.4250 4.5992 -3.1785 11 1 2.2821 3.6905 -3.8589 12 6 2.3857 2.0282 1.2620 13 1 2.7713 3.0274 1.0593 14 6 3.4622 1.1993 1.9655 15 6 1.1519 2.1303 2.1610 16 7 0.0790 2.8210 1.4412 17 6 -1.1104 3.0272 2.0404 18 8 -1.2925 2.6413 3.1758 19 6 -2.2138 3.7382 1.3003 20 6 -3.4477 3.8401 2.1992 21 6 -4.5682 4.5615 1.4474 22 6 -4.4970 6.0936 1.5578 23 6 -6.0303 6.0747 1.6953 24 6 -5.8862 4.6420 2.2356 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 4.9147 3.6129 -0.6688 31 1 3.0767 0.2001 2.1683 32 1 4.3412 1.1266 1.3251 33 1 3.7353 1.6804 2.9048 34 1 0.8191 1.1295 2.4362 35 1 1.4040 2.6899 3.0618 36 1 0.2248 3.1299 0.5334 37 1 -1.8807 4.7388 1.0251 38 1 -2.4662 3.1788 0.3994 39 1 -3.7807 2.8393 2.4740 40 1 -3.1956 4.3993 3.1002 41 1 -4.6917 4.2026 0.4257 42 1 -3.9827 6.4436 2.4528 43 1 -4.1454 6.5810 0.6484 44 1 -6.5537 6.1308 0.7408 45 1 -6.4138 6.7821 2.4306 46 1 -6.6544 3.9592 1.8727 47 1 -5.7525 4.5929 3.3162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152611444.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:05 Heat of formation + Delta-G solvation = -21.964380 kcal Electronic energy + Delta-G solvation = -23320.281554 eV Core-core repulsion = 20117.494992 eV Total energy + Delta-G solvation = -3202.786562 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.49362 -38.65955 -36.87973 -33.56592 -32.60517 -31.89075 -30.96464 -28.20389 -26.91008 -25.70774 -24.74518 -23.93818 -22.00930 -21.55111 -19.68311 -19.45626 -19.13797 -17.00529 -16.41187 -15.80758 -15.51289 -15.13741 -14.76400 -14.47764 -14.37107 -13.66911 -13.40196 -12.91333 -12.77214 -12.65374 -12.54587 -12.36477 -12.22711 -11.83597 -11.76836 -11.49508 -11.35445 -11.07428 -10.97123 -10.92906 -10.83178 -10.68101 -10.62978 -10.29466 -10.27715 -10.15314 -10.06617 -9.64186 -9.43894 -9.25183 -8.52708 -8.30539 -6.66467 -5.89319 -3.39399 3.19013 3.29281 3.38356 3.38911 3.86547 4.40340 4.51166 4.55641 4.66074 4.75552 5.16373 5.25289 5.28373 5.37678 5.41279 5.52657 5.63751 5.65136 5.73255 5.79652 5.81919 5.84358 5.95121 6.06228 6.07802 6.22042 6.24191 6.27737 6.32724 6.39406 6.48283 6.50119 6.54214 6.63755 6.68153 6.83228 6.91665 7.14978 7.16912 7.47911 7.56367 7.75025 8.25914 8.43135 8.85095 9.15019 9.76406 10.34346 11.16758 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016486 B = 0.004422 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.017423 B = 6330.088795 C = 7209.189643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.140 3.860 3 N -0.582 5.582 4 C -0.263 4.263 5 H 0.063 0.937 6 C 0.012 3.988 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.287 1.287 10 H -0.291 1.291 11 H -0.279 1.279 12 C 0.174 3.826 13 H 0.101 0.899 14 C -0.144 4.144 15 C 0.102 3.898 16 N -0.702 5.702 17 C 0.503 3.497 18 O -0.565 6.565 19 C -0.140 4.140 20 C -0.090 4.090 21 C -0.112 4.112 22 C -0.139 4.139 23 C -0.144 4.144 24 C -0.138 4.138 25 H 0.046 0.954 26 H 0.032 0.968 27 H 0.050 0.950 28 H 0.040 0.960 29 H 0.037 0.963 30 H 0.255 0.745 31 H 0.031 0.969 32 H 0.074 0.926 33 H 0.034 0.966 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.411 0.589 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.471 3.098 3.243 14.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 N -0.303 5.303 4 C -0.393 4.393 5 H 0.081 0.919 6 C -0.188 4.188 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.214 1.214 10 H -0.218 1.218 11 H -0.204 1.204 12 C 0.066 3.934 13 H 0.119 0.881 14 C -0.204 4.204 15 C -0.024 4.024 16 N -0.353 5.353 17 C 0.289 3.711 18 O -0.445 6.445 19 C -0.180 4.180 20 C -0.128 4.128 21 C -0.130 4.130 22 C -0.177 4.177 23 C -0.181 4.181 24 C -0.175 4.175 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.247 0.753 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.396 2.910 4.017 14.285 hybrid contribution 0.178 0.789 -1.220 1.464 sum -13.218 3.699 2.797 14.008 Atomic orbital electron populations 1.22421 1.00050 0.98920 1.01443 1.20766 0.91667 0.87497 0.98713 1.43865 1.75904 1.08258 1.02301 1.19091 1.07754 1.18742 0.93696 0.91891 1.25172 0.94480 1.01355 0.97809 1.70006 1.07255 1.36227 1.39752 0.86395 0.76969 0.81904 0.82100 1.21361 1.21775 1.20390 1.20523 0.89130 0.99389 0.84307 0.88082 1.22002 1.01079 0.98157 0.99112 1.22136 0.89354 0.95600 0.95298 1.46006 1.12401 1.57892 1.18971 1.20652 0.83736 0.79797 0.86897 1.90633 1.82089 1.52813 1.18967 1.21646 0.94719 1.01694 0.99947 1.21281 0.92588 1.01238 0.97686 1.22596 0.95119 0.95569 0.99720 1.23026 0.96141 0.96353 1.02132 1.22839 0.96848 0.97345 1.01103 1.22929 0.97459 0.96823 1.00283 0.93492 0.94899 0.93059 0.94165 0.94477 0.93542 0.95014 0.90658 0.94731 0.93056 0.93256 0.75274 0.89332 0.89264 0.91336 0.91351 0.89287 0.90089 0.91596 0.90455 0.91768 0.91756 0.90108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 9.95 37.16 0.37 -2.68 16 2 C 0.14 2.83 5.75 -4.04 -0.02 2.81 16 3 N -0.58 -13.03 1.88 -165.66 -0.31 -13.35 16 4 C -0.26 -6.47 9.07 -15.06 -0.14 -6.61 16 5 H 0.06 1.56 7.89 -52.48 -0.41 1.15 16 6 C 0.01 0.31 4.86 -17.43 -0.08 0.22 16 7 N -0.89 -23.54 10.90 55.49 0.61 -22.93 16 8 Si 0.90 20.10 29.59 -169.99 -5.03 15.07 16 9 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 C 0.17 3.73 1.95 -67.93 -0.13 3.60 16 13 H 0.10 2.47 5.94 -51.93 -0.31 2.16 16 14 C -0.14 -2.95 9.05 37.15 0.34 -2.61 16 15 C 0.10 1.99 4.36 -4.04 -0.02 1.98 16 16 N -0.70 -12.84 4.28 -60.30 -0.26 -13.10 16 17 C 0.50 8.80 7.78 -10.99 -0.09 8.71 16 18 O -0.56 -11.62 15.98 5.55 0.09 -11.53 16 19 C -0.14 -1.87 5.70 -27.88 -0.16 -2.03 16 20 C -0.09 -1.11 4.33 -26.73 -0.12 -1.23 16 21 C -0.11 -1.12 3.64 -89.81 -0.33 -1.45 16 22 C -0.14 -1.31 7.65 -25.83 -0.20 -1.51 16 23 C -0.14 -1.22 8.09 -25.82 -0.21 -1.43 16 24 C -0.14 -1.26 7.65 -25.91 -0.20 -1.46 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.96 5.32 -51.93 -0.28 0.68 16 28 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 29 H 0.04 0.73 6.29 -51.93 -0.33 0.40 16 30 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 31 H 0.03 0.60 6.56 -51.93 -0.34 0.26 16 32 H 0.07 1.73 7.69 -51.93 -0.40 1.33 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.05 1.03 6.98 -51.93 -0.36 0.67 16 35 H 0.05 0.97 8.14 -51.92 -0.42 0.54 16 36 H 0.41 7.67 7.74 -40.82 -0.32 7.35 16 37 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 40 H 0.07 0.91 7.83 -51.93 -0.41 0.50 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.08 0.78 7.92 -51.93 -0.41 0.37 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 LS Contribution 366.07 15.07 5.52 5.52 Total: -1.00 -27.11 366.07 -8.98 -36.08 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -8.61 Total: 7.92 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -0.98 Total: -3.69 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.04 Total: -49.38 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.03 Total: 15.07 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -27.11 -8.98 -36.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152611444.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.120 kcal (2) G-P(sol) polarization free energy of solvation -27.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds