Wall clock time and date at job start Tue Mar 31 2020 05:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47220 * 2 1 4 4 C 1.36935 * 120.00288 * 275.24591 * 3 2 1 5 5 H 1.08005 * 119.99657 * 26.66266 * 4 3 2 6 6 C 1.38805 * 120.00417 * 206.67043 * 4 3 2 7 7 N 1.31622 * 119.99968 * 24.73643 * 6 4 3 8 8 Si 1.86807 * 120.00196 * 204.73792 * 6 4 3 9 9 H 1.48499 * 109.46739 * 84.99419 * 8 6 4 10 10 H 1.48498 * 109.47110 * 204.99307 * 8 6 4 11 11 H 1.48497 * 109.46847 * 324.99388 * 8 6 4 12 12 C 1.46503 * 119.99907 * 95.24973 * 3 2 1 13 13 H 1.09001 * 109.46747 * 179.97438 * 12 3 2 14 14 C 1.52997 * 109.47383 * 59.99784 * 12 3 2 15 15 C 1.53004 * 109.46976 * 299.99786 * 12 3 2 16 16 N 1.46498 * 109.47038 * 305.00206 * 15 12 3 17 17 C 1.34781 * 120.00347 * 180.02562 * 16 15 12 18 18 O 1.21287 * 119.99347 * 359.97438 * 17 16 15 19 19 C 1.50692 * 120.00282 * 180.02562 * 17 16 15 20 20 C 1.53787 * 113.61577 * 279.13331 * 19 17 16 21 21 C 1.53955 * 87.01962 * 220.05060 * 20 19 17 22 22 C 1.52999 * 113.53716 * 270.80902 * 21 20 19 23 23 C 1.52997 * 113.74017 * 139.94307 * 21 20 19 24 24 C 1.53778 * 87.11114 * 25.36187 * 21 20 19 25 25 H 1.08996 * 109.47268 * 300.00337 * 1 2 3 26 26 H 1.09004 * 109.46906 * 59.99962 * 1 2 3 27 27 H 1.09002 * 109.47379 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46894 * 240.00027 * 2 1 3 29 29 H 1.08999 * 109.47273 * 120.00352 * 2 1 3 30 30 H 0.97003 * 119.99624 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47019 * 59.99556 * 14 12 3 32 32 H 1.08996 * 109.47521 * 180.02562 * 14 12 3 33 33 H 1.09000 * 109.46863 * 300.00443 * 14 12 3 34 34 H 1.09002 * 109.47197 * 65.00010 * 15 12 3 35 35 H 1.09001 * 109.46986 * 185.00501 * 15 12 3 36 36 H 0.97004 * 120.00336 * 359.97438 * 16 15 12 37 37 H 1.09002 * 112.84943 * 50.33148 * 19 17 16 38 38 H 1.08999 * 113.61170 * 334.57278 * 20 19 17 39 39 H 1.08999 * 113.61365 * 105.46857 * 20 19 17 40 40 H 1.08995 * 109.47538 * 157.49762 * 22 21 20 41 41 H 1.09004 * 109.47195 * 277.50138 * 22 21 20 42 42 H 1.09003 * 109.46891 * 37.49656 * 22 21 20 43 43 H 1.08998 * 109.47478 * 322.40068 * 23 21 20 44 44 H 1.09005 * 109.47014 * 82.40377 * 23 21 20 45 45 H 1.09004 * 109.46984 * 202.40048 * 23 21 20 46 46 H 1.09008 * 113.61460 * 220.08814 * 24 21 20 47 47 H 1.09000 * 113.61407 * 89.19254 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1444 2.0629 -1.1809 5 1 1.5227 1.8013 -2.0244 6 6 3.0712 3.0900 -1.2939 7 7 4.1289 3.1111 -0.5108 8 14 2.8174 4.4423 -2.5575 9 1 1.9353 5.4924 -1.9880 10 1 4.1297 5.0384 -2.9149 11 1 2.1855 3.8709 -3.7738 12 6 2.3720 2.0331 1.2634 13 1 2.7124 3.0493 1.0650 14 6 3.4907 1.2454 1.9481 15 6 1.1450 2.0748 2.1766 16 7 0.0356 2.7246 1.4745 17 6 -1.1549 2.8748 2.0883 18 8 -1.3077 2.4715 3.2219 19 6 -2.2963 3.5427 1.3658 20 6 -2.2225 5.0786 1.3842 21 6 -3.7467 5.0691 1.6010 22 6 -4.5492 5.0716 0.2984 23 6 -4.2333 6.1202 2.6006 24 6 -3.5724 3.6698 2.2145 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 4.7764 3.8291 -0.5896 31 1 4.3648 1.2156 1.2975 32 1 3.7535 1.7302 2.8883 33 1 3.1507 0.2290 2.1464 34 1 0.8585 1.0585 2.4469 35 1 1.3830 2.6375 3.0794 36 1 0.1579 3.0475 0.5680 37 1 -2.4712 3.1258 0.3740 38 1 -1.6636 5.4788 2.2302 39 1 -1.9187 5.5126 0.4316 40 1 -5.5459 4.6719 0.4848 41 1 -4.6311 6.0921 -0.0759 42 1 -4.0421 4.4528 -0.4419 43 1 -3.5131 6.2090 3.4140 44 1 -4.3331 7.0818 2.0970 45 1 -5.2004 5.8187 3.0030 46 1 -4.3569 2.9680 1.9312 47 1 -3.3834 3.6841 3.2879 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153096045.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:53 Heat of formation + Delta-G solvation = -14.171947 kcal Electronic energy + Delta-G solvation = -23975.830374 eV Core-core repulsion = 20773.381717 eV Total energy + Delta-G solvation = -3202.448657 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.30686 -38.19107 -36.74423 -33.55777 -31.91091 -31.30710 -30.59842 -28.19597 -27.51236 -25.99299 -25.58857 -23.95272 -23.12031 -21.64121 -19.57439 -19.16128 -18.22070 -17.10033 -16.55375 -15.60060 -15.18557 -14.79401 -14.62256 -14.22038 -13.99427 -13.82101 -13.42031 -13.04698 -12.80059 -12.71452 -12.57783 -12.32922 -12.04606 -11.87471 -11.85308 -11.60570 -11.50570 -11.11974 -11.07361 -10.97702 -10.79872 -10.79330 -10.64424 -10.30622 -10.28932 -10.08445 -10.02335 -9.64876 -9.45804 -9.15972 -8.48739 -8.30785 -6.78699 -5.90697 -3.28598 3.13872 3.30710 3.39697 3.40648 3.87400 4.41899 4.42536 4.57823 4.75753 4.83662 5.14805 5.21359 5.38022 5.45039 5.51823 5.54350 5.63217 5.74080 5.80474 5.83839 5.89693 5.93182 5.95161 6.04729 6.09187 6.12449 6.20635 6.26389 6.36087 6.38436 6.49161 6.52222 6.54199 6.62294 6.67333 6.81942 6.89547 7.14187 7.15644 7.47643 7.54821 7.76506 8.25534 8.37187 8.84208 9.13163 9.78063 10.32227 11.16316 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015457 B = 0.005664 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.039867 B = 4942.335824 C = 5816.197515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.141 3.859 3 N -0.583 5.583 4 C -0.260 4.260 5 H 0.067 0.933 6 C 0.008 3.992 7 N -0.887 5.887 8 Si 0.891 3.109 9 H -0.286 1.286 10 H -0.292 1.292 11 H -0.280 1.280 12 C 0.172 3.828 13 H 0.104 0.896 14 C -0.144 4.144 15 C 0.102 3.898 16 N -0.699 5.699 17 C 0.514 3.486 18 O -0.563 6.563 19 C -0.136 4.136 20 C -0.114 4.114 21 C -0.092 4.092 22 C -0.128 4.128 23 C -0.134 4.134 24 C -0.106 4.106 25 H 0.053 0.947 26 H 0.046 0.954 27 H 0.032 0.968 28 H 0.040 0.960 29 H 0.037 0.963 30 H 0.254 0.746 31 H 0.075 0.925 32 H 0.033 0.967 33 H 0.030 0.970 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.411 0.589 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.067 0.933 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.331 2.957 3.111 13.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.390 4.390 5 H 0.085 0.915 6 C -0.192 4.192 7 N -0.530 5.530 8 Si 0.720 3.280 9 H -0.213 1.213 10 H -0.219 1.219 11 H -0.205 1.205 12 C 0.064 3.936 13 H 0.122 0.878 14 C -0.203 4.203 15 C -0.023 4.023 16 N -0.349 5.349 17 C 0.300 3.700 18 O -0.443 6.443 19 C -0.157 4.157 20 C -0.152 4.152 21 C -0.092 4.092 22 C -0.185 4.185 23 C -0.191 4.191 24 C -0.143 4.143 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.247 0.753 37 H 0.127 0.873 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.243 2.763 3.886 13.139 hybrid contribution 0.120 0.780 -1.151 1.396 sum -12.123 3.543 2.735 12.923 Atomic orbital electron populations 1.22457 0.99970 0.98981 1.01618 1.20735 0.91796 0.87317 0.98723 1.43967 1.75742 1.08465 1.02254 1.19116 1.14986 1.13201 0.91659 0.91530 1.24931 0.94550 1.01417 0.98297 1.70102 1.09114 1.32245 1.41537 0.86489 0.77133 0.82877 0.81460 1.21338 1.21889 1.20520 1.20567 0.89066 0.99808 0.84124 0.87830 1.22008 1.01052 0.98081 0.99196 1.22118 0.88457 0.96224 0.95544 1.46002 1.10941 1.58877 1.19087 1.20394 0.83878 0.79115 0.86587 1.90622 1.83413 1.51243 1.19010 1.22681 0.95121 0.97077 1.00835 1.23021 0.95820 0.93615 1.02774 1.21832 0.95155 0.96017 0.96189 1.21604 0.99456 1.01862 0.95626 1.21707 1.01037 0.97921 0.98422 1.22914 0.95453 0.95551 1.00408 0.92847 0.93443 0.94894 0.94143 0.94506 0.93581 0.90642 0.94743 0.95100 0.92986 0.93169 0.75271 0.87275 0.89762 0.90670 0.92430 0.92443 0.92197 0.92478 0.92750 0.92635 0.91415 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 9.85 37.16 0.37 -2.72 16 2 C 0.14 2.83 5.69 -4.04 -0.02 2.81 16 3 N -0.58 -13.04 1.88 -165.66 -0.31 -13.35 16 4 C -0.26 -6.43 9.28 -15.06 -0.14 -6.56 16 5 H 0.07 1.66 7.94 -52.48 -0.42 1.24 16 6 C 0.01 0.20 4.71 -17.43 -0.08 0.12 16 7 N -0.89 -23.52 10.91 55.49 0.61 -22.91 16 8 Si 0.89 20.13 29.62 -169.99 -5.04 15.09 16 9 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 C 0.17 3.69 1.97 -67.93 -0.13 3.56 16 13 H 0.10 2.53 5.76 -51.93 -0.30 2.23 16 14 C -0.14 -2.95 9.08 37.16 0.34 -2.62 16 15 C 0.10 2.00 4.33 -4.04 -0.02 1.98 16 16 N -0.70 -12.86 3.99 -60.29 -0.24 -13.11 16 17 C 0.51 9.12 7.12 -10.99 -0.08 9.04 16 18 O -0.56 -11.68 15.91 5.55 0.09 -11.59 16 19 C -0.14 -1.89 3.79 -90.96 -0.34 -2.24 16 20 C -0.11 -1.43 6.76 -25.82 -0.17 -1.61 16 21 C -0.09 -0.99 1.39 -153.61 -0.21 -1.21 16 22 C -0.13 -1.21 9.07 37.16 0.34 -0.87 16 23 C -0.13 -1.30 9.20 37.16 0.34 -0.96 16 24 C -0.11 -1.33 6.55 -25.92 -0.17 -1.50 16 25 H 0.05 1.00 4.95 -51.93 -0.26 0.74 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 29 H 0.04 0.72 6.44 -51.93 -0.33 0.38 16 30 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 31 H 0.07 1.75 7.69 -51.93 -0.40 1.35 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.03 0.59 6.66 -51.93 -0.35 0.24 16 34 H 0.05 1.05 7.01 -51.93 -0.36 0.68 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.41 7.77 7.89 -40.82 -0.32 7.45 16 37 H 0.11 1.42 7.66 -51.93 -0.40 1.02 16 38 H 0.08 1.12 7.93 -51.93 -0.41 0.71 16 39 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.58 7.34 -51.93 -0.38 0.19 16 43 H 0.06 0.58 7.96 -51.93 -0.41 0.17 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.79 8.10 -51.92 -0.42 0.37 16 47 H 0.09 1.32 7.41 -51.93 -0.38 0.94 16 LS Contribution 362.79 15.07 5.47 5.47 Total: -1.00 -27.06 362.79 -7.93 -34.99 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -8.51 Total: 8.19 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 0.01 Total: -2.77 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.05 Total: -49.37 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.04 Total: 15.09 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -27.06 -7.93 -34.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153096045.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.819 kcal (2) G-P(sol) polarization free energy of solvation -27.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds