Wall clock time and date at job start Tue Mar 31 2020 05:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47159 * 2 1 4 4 C 1.36934 * 119.99947 * 84.27136 * 3 2 1 5 5 H 1.08003 * 120.00179 * 28.84654 * 4 3 2 6 6 C 1.38812 * 120.00164 * 209.11487 * 4 3 2 7 7 N 1.31621 * 119.99876 * 18.63124 * 6 4 3 8 8 Si 1.86799 * 120.00358 * 198.62570 * 6 4 3 9 9 H 1.48499 * 109.47342 * 89.99923 * 8 6 4 10 10 H 1.48499 * 109.47355 * 210.00654 * 8 6 4 11 11 H 1.48503 * 109.46828 * 330.00281 * 8 6 4 12 12 C 1.46499 * 119.99894 * 264.27758 * 3 2 1 13 13 H 1.08998 * 109.46848 * 183.53318 * 12 3 2 14 14 C 1.52994 * 109.47408 * 63.52912 * 12 3 2 15 15 C 1.53003 * 109.47116 * 303.52423 * 12 3 2 16 16 N 1.46504 * 109.47071 * 305.00725 * 15 12 3 17 17 C 1.34777 * 119.99890 * 179.97438 * 16 15 12 18 18 O 1.21279 * 120.00105 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99927 * 179.97438 * 17 16 15 20 20 H 1.08996 * 109.47027 * 299.99851 * 19 17 16 21 21 C 1.52990 * 109.47251 * 59.99907 * 19 17 16 22 22 C 1.53003 * 109.47107 * 180.02562 * 19 17 16 23 23 C 1.53777 * 113.61696 * 157.49538 * 22 19 17 24 24 C 1.53782 * 87.08323 * 220.01773 * 23 22 19 25 25 C 1.53780 * 113.61656 * 59.99370 * 22 19 17 26 26 H 1.09002 * 109.47243 * 59.99895 * 1 2 3 27 27 H 1.08999 * 109.47377 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47196 * 300.00059 * 1 2 3 29 29 H 1.09000 * 109.47196 * 239.99941 * 2 1 3 30 30 H 1.09002 * 109.47243 * 120.00104 * 2 1 3 31 31 H 0.96998 * 119.99824 * 180.02562 * 7 6 4 32 32 H 1.08996 * 109.47094 * 180.02562 * 14 12 3 33 33 H 1.09000 * 109.46732 * 299.99837 * 14 12 3 34 34 H 1.08994 * 109.47653 * 59.99803 * 14 12 3 35 35 H 1.09006 * 109.46896 * 65.00182 * 15 12 3 36 36 H 1.08994 * 109.47470 * 185.00355 * 15 12 3 37 37 H 0.96996 * 120.00111 * 359.97438 * 16 15 12 38 38 H 1.09002 * 109.47752 * 180.02562 * 21 19 17 39 39 H 1.09004 * 109.47470 * 300.00075 * 21 19 17 40 40 H 1.09006 * 109.47246 * 59.99979 * 21 19 17 41 41 H 1.09007 * 112.84671 * 288.80210 * 22 19 17 42 42 H 1.08993 * 113.61318 * 334.56900 * 23 22 19 43 43 H 1.09001 * 113.61195 * 105.46785 * 23 22 19 44 44 H 1.09001 * 113.61041 * 270.88605 * 24 23 22 45 45 H 1.08993 * 113.68624 * 139.99218 * 24 23 22 46 46 H 1.08995 * 113.61847 * 254.53475 * 25 22 19 47 47 H 1.08999 * 113.60874 * 25.35481 * 25 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1349 2.0662 1.1800 5 1 2.3292 1.5314 2.0979 6 6 1.9979 3.4474 1.1972 7 7 1.4073 4.0627 0.1947 8 14 2.6517 4.4330 2.6431 9 1 4.0596 4.8247 2.3791 10 1 1.8244 5.6526 2.8255 11 1 2.5909 3.6050 3.8744 12 6 2.3817 2.0297 -1.2624 13 1 2.7792 3.0240 -1.0589 14 6 1.1416 2.1480 -2.1505 15 6 3.4439 1.1928 -1.9783 16 7 4.5829 0.9790 -1.0822 17 6 5.6452 0.2633 -1.5015 18 8 5.6579 -0.2042 -2.6205 19 6 6.8172 0.0438 -0.5799 20 1 7.2431 1.0067 -0.2981 21 6 6.3474 -0.6931 0.6759 22 6 7.8792 -0.7932 -1.2957 23 6 9.2914 -0.6285 -0.7098 24 6 9.8090 -0.6460 -2.1578 25 6 8.4197 -0.1373 -2.5774 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.3119 5.0279 0.2066 32 1 1.4122 2.6300 -3.0899 33 1 0.7443 1.1536 -2.3540 34 1 0.3850 2.7442 -1.6406 35 1 3.0181 0.2299 -2.2608 36 1 3.7787 1.7184 -2.8725 37 1 4.5726 1.3525 -0.1871 38 1 7.1950 -0.8515 1.3428 39 1 5.5910 -0.0965 1.1858 40 1 5.9215 -1.6561 0.3942 41 1 7.5792 -1.8325 -1.4302 42 1 9.4453 0.3238 -0.2026 43 1 9.6209 -1.4825 -0.1180 44 1 10.0380 -1.6455 -2.5276 45 1 10.6105 0.0685 -2.3450 46 1 8.0455 -0.5947 -3.4932 47 1 8.3340 0.9493 -2.5812 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153973532.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:21 Heat of formation + Delta-G solvation = -16.022274 kcal Electronic energy + Delta-G solvation = -23851.700002 eV Core-core repulsion = 20649.171109 eV Total energy + Delta-G solvation = -3202.528893 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.93480 -38.10223 -36.77125 -33.73042 -32.76789 -31.85218 -30.56849 -28.31963 -25.99222 -25.55293 -25.24535 -23.96297 -22.43769 -21.58683 -19.56270 -19.42924 -19.06434 -17.07776 -16.47335 -15.71948 -15.26474 -14.93142 -14.68929 -14.47159 -14.06076 -13.61904 -13.34856 -12.81056 -12.64975 -12.55286 -12.37263 -12.20804 -12.02986 -11.87599 -11.59845 -11.52392 -11.40254 -11.30468 -11.08127 -11.02431 -10.83223 -10.51328 -10.43359 -10.29791 -10.27377 -10.00471 -9.90667 -9.58553 -9.48629 -9.09242 -8.53219 -8.30933 -6.74322 -5.87562 -3.31008 3.18935 3.30773 3.39576 3.40452 3.82586 4.42377 4.66115 4.69840 4.75913 4.98119 5.20536 5.27699 5.28756 5.39064 5.47108 5.55936 5.73369 5.78967 5.83386 5.85782 5.92846 5.97101 6.08901 6.12275 6.17770 6.22052 6.31217 6.36337 6.38022 6.46276 6.51410 6.57152 6.58873 6.71411 6.77500 6.79726 6.97699 7.16255 7.27256 7.53379 7.62266 7.77545 8.25155 8.40291 8.84824 9.15765 9.78392 10.33120 11.19435 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017350 B = 0.005046 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.424296 B = 5547.350895 C = 6223.136082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.143 3.857 3 N -0.583 5.583 4 C -0.258 4.258 5 H 0.066 0.934 6 C 0.008 3.992 7 N -0.892 5.892 8 Si 0.896 3.104 9 H -0.288 1.288 10 H -0.292 1.292 11 H -0.280 1.280 12 C 0.177 3.823 13 H 0.102 0.898 14 C -0.143 4.143 15 C 0.102 3.898 16 N -0.705 5.705 17 C 0.509 3.491 18 O -0.557 6.557 19 C -0.102 4.102 20 H 0.092 0.908 21 C -0.142 4.142 22 C -0.085 4.085 23 C -0.136 4.136 24 C -0.147 4.147 25 C -0.122 4.122 26 H 0.049 0.951 27 H 0.027 0.973 28 H 0.052 0.948 29 H 0.037 0.963 30 H 0.035 0.965 31 H 0.254 0.746 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.409 0.591 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.071 0.929 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.589 -7.032 -1.522 12.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.017 3.983 3 N -0.304 5.304 4 C -0.387 4.387 5 H 0.084 0.916 6 C -0.192 4.192 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.215 1.215 10 H -0.219 1.219 11 H -0.205 1.205 12 C 0.070 3.930 13 H 0.120 0.880 14 C -0.203 4.203 15 C -0.023 4.023 16 N -0.355 5.355 17 C 0.295 3.705 18 O -0.436 6.436 19 C -0.124 4.124 20 H 0.110 0.890 21 C -0.199 4.199 22 C -0.104 4.104 23 C -0.174 4.174 24 C -0.184 4.184 25 C -0.159 4.159 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.246 0.754 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.108 0.892 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.531 -7.178 -2.319 12.954 hybrid contribution 0.014 0.860 1.170 1.452 sum 10.545 -6.317 -1.149 12.346 Atomic orbital electron populations 1.22399 0.99852 0.98327 1.02072 1.20778 0.91861 0.87621 0.98065 1.44001 1.73765 1.09698 1.02955 1.19159 1.43017 0.89237 0.87316 0.91614 1.25037 0.98931 0.97867 0.97365 1.70018 1.42763 1.08522 1.32269 0.86392 0.78576 0.79849 0.82550 1.21481 1.21888 1.20508 1.20511 0.90949 0.96631 0.84923 0.88039 1.22120 1.00643 0.99480 0.98009 1.22065 0.87371 1.00245 0.92656 1.45987 1.17454 1.53244 1.18837 1.20540 0.83847 0.78322 0.87803 1.90622 1.81149 1.50778 1.21048 1.21336 0.94559 1.00669 0.95810 0.89019 1.21734 1.01599 1.00711 0.95906 1.22297 0.92453 0.99608 0.96033 1.22982 0.96127 1.01848 0.96421 1.22861 0.97541 1.01230 0.96814 1.22772 0.94528 1.00267 0.98330 0.93163 0.95392 0.92934 0.94464 0.94641 0.93634 0.95240 0.95232 0.90150 0.93090 0.93024 0.75438 0.91947 0.91441 0.92384 0.89176 0.90202 0.91752 0.90543 0.91869 0.91039 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 10.02 37.16 0.37 -2.85 16 2 C 0.14 2.86 5.73 -4.04 -0.02 2.84 16 3 N -0.58 -12.88 1.84 -165.66 -0.30 -13.19 16 4 C -0.26 -6.29 9.50 -15.06 -0.14 -6.44 16 5 H 0.07 1.62 7.90 -52.48 -0.41 1.20 16 6 C 0.01 0.19 4.84 -17.43 -0.08 0.10 16 7 N -0.89 -23.45 10.24 55.49 0.57 -22.88 16 8 Si 0.90 20.16 29.59 -169.99 -5.03 15.13 16 9 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 12 C 0.18 3.79 1.93 -67.93 -0.13 3.66 16 13 H 0.10 2.47 5.93 -51.93 -0.31 2.17 16 14 C -0.14 -2.97 8.25 37.15 0.31 -2.66 16 15 C 0.10 1.98 4.86 -4.04 -0.02 1.96 16 16 N -0.70 -12.70 5.28 -60.29 -0.32 -13.02 16 17 C 0.51 8.75 6.96 -10.99 -0.08 8.68 16 18 O -0.56 -11.10 14.85 5.56 0.08 -11.02 16 19 C -0.10 -1.37 2.48 -91.78 -0.23 -1.60 16 20 H 0.09 1.15 7.94 -51.93 -0.41 0.74 16 21 C -0.14 -1.74 9.09 37.15 0.34 -1.40 16 22 C -0.09 -1.06 2.72 -89.81 -0.24 -1.30 16 23 C -0.14 -1.38 7.63 -25.92 -0.20 -1.57 16 24 C -0.15 -1.50 8.08 -25.92 -0.21 -1.71 16 25 C -0.12 -1.55 6.19 -25.92 -0.16 -1.71 16 26 H 0.05 1.00 6.03 -51.93 -0.31 0.68 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.04 0.72 6.35 -51.93 -0.33 0.39 16 30 H 0.04 0.70 8.09 -51.93 -0.42 0.28 16 31 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.03 0.57 6.50 -51.93 -0.34 0.23 16 34 H 0.08 1.90 7.22 -51.93 -0.37 1.52 16 35 H 0.05 1.02 6.76 -51.93 -0.35 0.67 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.41 7.48 7.50 -40.82 -0.31 7.17 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.88 7.56 -51.93 -0.39 0.49 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 1.18 8.14 -51.92 -0.42 0.75 16 42 H 0.08 0.77 7.96 -51.93 -0.41 0.36 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.07 1.02 7.96 -51.93 -0.41 0.60 16 47 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 LS Contribution 362.93 15.07 5.47 5.47 Total: -1.00 -26.55 362.93 -8.61 -35.16 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -8.57 Total: 8.36 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -0.50 Total: -4.02 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: -0.06 Total: -49.08 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.08 Total: -11.02 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -26.55 -8.61 -35.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153973532.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.136 kcal (2) G-P(sol) polarization free energy of solvation -26.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds