Wall clock time and date at job start Tue Mar 31 2020 05:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47159 * 2 1 4 4 C 1.36934 * 119.99947 * 84.27136 * 3 2 1 5 5 H 1.08003 * 120.00179 * 28.84654 * 4 3 2 6 6 C 1.38812 * 120.00164 * 209.11487 * 4 3 2 7 7 N 1.31621 * 119.99876 * 18.63124 * 6 4 3 8 8 Si 1.86799 * 120.00358 * 198.62570 * 6 4 3 9 9 H 1.48499 * 109.47342 * 89.99923 * 8 6 4 10 10 H 1.48499 * 109.47355 * 210.00654 * 8 6 4 11 11 H 1.48503 * 109.46828 * 330.00281 * 8 6 4 12 12 C 1.46499 * 119.99894 * 264.27758 * 3 2 1 13 13 H 1.08998 * 109.46848 * 183.53318 * 12 3 2 14 14 C 1.52994 * 109.47408 * 63.52912 * 12 3 2 15 15 C 1.53003 * 109.47116 * 303.52423 * 12 3 2 16 16 N 1.46504 * 109.47071 * 305.00725 * 15 12 3 17 17 C 1.34777 * 119.99890 * 179.97438 * 16 15 12 18 18 O 1.21279 * 120.00105 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99927 * 179.97438 * 17 16 15 20 20 H 1.08996 * 109.47027 * 299.99851 * 19 17 16 21 21 C 1.52990 * 109.47251 * 59.99907 * 19 17 16 22 22 C 1.53003 * 109.47107 * 180.02562 * 19 17 16 23 23 C 1.53777 * 113.61696 * 157.49538 * 22 19 17 24 24 C 1.53782 * 87.08323 * 220.01773 * 23 22 19 25 25 C 1.53780 * 113.61656 * 59.99370 * 22 19 17 26 26 H 1.09002 * 109.47243 * 59.99895 * 1 2 3 27 27 H 1.08999 * 109.47377 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47196 * 300.00059 * 1 2 3 29 29 H 1.09000 * 109.47196 * 239.99941 * 2 1 3 30 30 H 1.09002 * 109.47243 * 120.00104 * 2 1 3 31 31 H 0.96998 * 119.99824 * 180.02562 * 7 6 4 32 32 H 1.08996 * 109.47094 * 180.02562 * 14 12 3 33 33 H 1.09000 * 109.46732 * 299.99837 * 14 12 3 34 34 H 1.08994 * 109.47653 * 59.99803 * 14 12 3 35 35 H 1.09006 * 109.46896 * 65.00182 * 15 12 3 36 36 H 1.08994 * 109.47470 * 185.00355 * 15 12 3 37 37 H 0.96996 * 120.00111 * 359.97438 * 16 15 12 38 38 H 1.09002 * 109.47752 * 180.02562 * 21 19 17 39 39 H 1.09004 * 109.47470 * 300.00075 * 21 19 17 40 40 H 1.09006 * 109.47246 * 59.99979 * 21 19 17 41 41 H 1.09007 * 112.84671 * 288.80210 * 22 19 17 42 42 H 1.08993 * 113.61318 * 334.56900 * 23 22 19 43 43 H 1.09001 * 113.61195 * 105.46785 * 23 22 19 44 44 H 1.09001 * 113.61041 * 270.88605 * 24 23 22 45 45 H 1.08993 * 113.68624 * 139.99218 * 24 23 22 46 46 H 1.08995 * 113.61847 * 254.53475 * 25 22 19 47 47 H 1.08999 * 113.60874 * 25.35481 * 25 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1349 2.0662 1.1800 5 1 2.3292 1.5314 2.0979 6 6 1.9979 3.4474 1.1972 7 7 1.4073 4.0627 0.1947 8 14 2.6517 4.4330 2.6431 9 1 4.0596 4.8247 2.3791 10 1 1.8244 5.6526 2.8255 11 1 2.5909 3.6050 3.8744 12 6 2.3817 2.0297 -1.2624 13 1 2.7792 3.0240 -1.0589 14 6 1.1416 2.1480 -2.1505 15 6 3.4439 1.1928 -1.9783 16 7 4.5829 0.9790 -1.0822 17 6 5.6452 0.2633 -1.5015 18 8 5.6579 -0.2042 -2.6205 19 6 6.8172 0.0438 -0.5799 20 1 7.2431 1.0067 -0.2981 21 6 6.3474 -0.6931 0.6759 22 6 7.8792 -0.7932 -1.2957 23 6 9.2914 -0.6285 -0.7098 24 6 9.8090 -0.6460 -2.1578 25 6 8.4197 -0.1373 -2.5774 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.3119 5.0279 0.2066 32 1 1.4122 2.6300 -3.0899 33 1 0.7443 1.1536 -2.3540 34 1 0.3850 2.7442 -1.6406 35 1 3.0181 0.2299 -2.2608 36 1 3.7787 1.7184 -2.8725 37 1 4.5726 1.3525 -0.1871 38 1 7.1950 -0.8515 1.3428 39 1 5.5910 -0.0965 1.1858 40 1 5.9215 -1.6561 0.3942 41 1 7.5792 -1.8325 -1.4302 42 1 9.4453 0.3238 -0.2026 43 1 9.6209 -1.4825 -0.1180 44 1 10.0380 -1.6455 -2.5276 45 1 10.6105 0.0685 -2.3450 46 1 8.0455 -0.5947 -3.4932 47 1 8.3340 0.9493 -2.5812 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153973532.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:21 Heat of formation + Delta-G solvation = -28.889657 kcal Electronic energy + Delta-G solvation = -23852.257974 eV Core-core repulsion = 20649.171109 eV Total energy + Delta-G solvation = -3203.086865 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.17125 -39.34001 -38.36819 -35.27201 -33.99642 -33.63689 -32.15647 -30.09259 -27.24836 -26.75979 -26.18164 -25.77916 -23.64850 -23.23205 -21.08265 -20.69564 -20.26239 -18.80246 -17.85065 -17.09599 -16.56819 -16.45546 -16.16162 -15.80902 -15.53013 -15.15846 -14.83738 -14.31022 -14.16008 -13.68683 -13.59232 -13.44685 -13.28000 -13.20743 -13.04616 -13.01113 -12.96992 -12.80206 -12.62173 -12.50930 -12.19894 -12.08958 -12.06592 -11.71322 -11.39234 -11.28008 -11.25163 -11.24281 -10.93043 -10.46907 -10.39569 -9.83390 -8.58223 -7.79136 -5.23239 1.51312 1.55682 1.61083 1.81483 2.46057 2.57954 3.35820 3.62733 3.68467 3.78856 3.80106 4.04363 4.14051 4.26855 4.35005 4.45117 4.48300 4.50004 4.55849 4.75034 4.85175 4.88247 4.89833 4.91099 4.91708 4.93100 4.97919 5.03903 5.09095 5.11064 5.14350 5.17530 5.23384 5.33284 5.34977 5.45482 5.60493 5.61180 5.67099 5.76458 5.78705 5.93207 6.50069 6.80859 7.25954 7.43252 7.95759 8.45992 9.25707 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017350 B = 0.005046 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.424296 B = 5547.350895 C = 6223.136082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.143 3.857 3 N -0.589 5.589 4 C -0.255 4.255 5 H 0.065 0.935 6 C -0.035 4.035 7 N -0.916 5.916 8 Si 0.951 3.049 9 H -0.285 1.285 10 H -0.305 1.305 11 H -0.274 1.274 12 C 0.184 3.816 13 H 0.072 0.928 14 C -0.133 4.133 15 C 0.115 3.885 16 N -0.706 5.706 17 C 0.506 3.494 18 O -0.586 6.586 19 C -0.096 4.096 20 H 0.105 0.895 21 C -0.136 4.136 22 C -0.090 4.090 23 C -0.123 4.123 24 C -0.138 4.138 25 C -0.132 4.132 26 H 0.040 0.960 27 H 0.057 0.943 28 H 0.030 0.970 29 H 0.046 0.954 30 H 0.040 0.960 31 H 0.246 0.754 32 H 0.042 0.958 33 H 0.040 0.960 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.409 0.591 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.047 0.953 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.222 -8.160 -0.543 14.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.017 3.983 3 N -0.311 5.311 4 C -0.385 4.385 5 H 0.083 0.917 6 C -0.232 4.232 7 N -0.561 5.561 8 Si 0.781 3.219 9 H -0.212 1.212 10 H -0.233 1.233 11 H -0.199 1.199 12 C 0.077 3.923 13 H 0.090 0.910 14 C -0.192 4.192 15 C -0.011 4.011 16 N -0.356 5.356 17 C 0.294 3.706 18 O -0.467 6.467 19 C -0.117 4.117 20 H 0.123 0.877 21 C -0.193 4.193 22 C -0.109 4.109 23 C -0.160 4.160 24 C -0.175 4.175 25 C -0.169 4.169 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.245 0.755 38 H 0.107 0.893 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.066 0.934 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.176 -8.330 -1.329 14.812 hybrid contribution -0.525 1.160 0.818 1.514 sum 11.651 -7.170 -0.510 13.690 Atomic orbital electron populations 1.22273 0.99160 0.99795 1.00466 1.20846 0.92312 0.86424 0.98681 1.44088 1.74090 1.10294 1.02602 1.19323 1.41768 0.89409 0.87975 0.91732 1.25576 0.99656 0.98725 0.99262 1.70159 1.44188 1.08009 1.33755 0.85525 0.77717 0.78103 0.80558 1.21194 1.23288 1.19874 1.20335 0.91528 0.95474 0.84975 0.90959 1.21965 0.99572 0.99588 0.98081 1.21773 0.87356 0.99434 0.92499 1.45995 1.17473 1.53578 1.18543 1.21257 0.84270 0.77147 0.87916 1.90611 1.81742 1.51800 1.22552 1.21379 0.93064 1.01772 0.95486 0.87743 1.21703 1.02322 0.99873 0.95451 1.22340 0.93544 0.98813 0.96173 1.22937 0.93604 1.03039 0.96459 1.22835 0.96162 1.01788 0.96704 1.22785 0.96853 0.99646 0.97633 0.94097 0.92369 0.95105 0.93604 0.94148 0.94450 0.93933 0.94144 0.93152 0.93408 0.93260 0.75481 0.89316 0.92427 0.92980 0.89968 0.89290 0.90066 0.89776 0.90682 0.93361 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.90 10.02 71.98 0.72 -5.17 16 2 C 0.14 5.55 5.73 86.38 0.49 6.04 16 3 N -0.59 -25.86 1.84 -678.04 -1.25 -27.11 16 4 C -0.25 -12.35 9.50 84.03 0.80 -11.55 16 5 H 0.06 3.12 7.90 -2.91 -0.02 3.10 16 6 C -0.04 -1.78 4.84 84.86 0.41 -1.37 16 7 N -0.92 -48.97 10.24 21.65 0.22 -48.74 16 8 Si 0.95 41.51 29.59 68.60 2.03 43.54 16 9 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.31 -13.93 7.11 99.48 0.71 -13.22 16 11 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 12 C 0.18 7.90 1.93 44.99 0.09 7.99 16 13 H 0.07 3.59 5.93 -2.39 -0.01 3.57 16 14 C -0.13 -5.52 8.25 71.98 0.59 -4.93 16 15 C 0.12 4.44 4.86 86.38 0.42 4.86 16 16 N -0.71 -25.12 5.28 -463.05 -2.45 -27.56 16 17 C 0.51 17.11 6.96 87.66 0.61 17.72 16 18 O -0.59 -23.35 14.85 -3.03 -0.04 -23.40 16 19 C -0.10 -2.42 2.48 -11.54 -0.03 -2.45 16 20 H 0.10 2.39 7.94 -2.39 -0.02 2.37 16 21 C -0.14 -3.03 9.09 71.98 0.65 -2.37 16 22 C -0.09 -2.08 2.72 -10.27 -0.03 -2.11 16 23 C -0.12 -2.09 7.63 31.12 0.24 -1.86 16 24 C -0.14 -2.48 8.08 31.12 0.25 -2.23 16 25 C -0.13 -3.26 6.19 31.12 0.19 -3.07 16 26 H 0.04 1.59 6.03 -2.39 -0.01 1.57 16 27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.05 1.70 6.35 -2.39 -0.02 1.69 16 30 H 0.04 1.53 8.09 -2.39 -0.02 1.51 16 31 H 0.25 13.10 8.31 -92.71 -0.77 12.33 16 32 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.04 1.55 6.50 -2.39 -0.02 1.54 16 34 H 0.05 2.40 7.22 -2.39 -0.02 2.39 16 35 H 0.05 1.87 6.76 -2.38 -0.02 1.86 16 36 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.41 14.72 7.50 -92.71 -0.70 14.03 16 38 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.06 1.40 7.56 -2.39 -0.02 1.38 16 40 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 42 H 0.09 1.39 7.96 -2.39 -0.02 1.37 16 43 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 46 H 0.05 1.39 7.96 -2.39 -0.02 1.37 16 47 H 0.07 1.71 8.10 -2.39 -0.02 1.69 16 Total: -1.00 -56.83 362.93 4.16 -52.67 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: 0.23 Total: 31.09 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 5.41 Total: -0.48 kcal Atomic # 7 Polarization: -99.95 SS G_CDS: -3.47 Total: -103.42 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.04 Total: -23.40 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -56.83 4.16 -52.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153973532.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.781 kcal (2) G-P(sol) polarization free energy of solvation -56.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds