Wall clock time and date at job start Tue Mar 31 2020 05:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.46579 * 2 1 4 4 C 1.36936 * 120.00463 * 84.32036 * 3 2 1 5 5 H 1.07996 * 119.99931 * 32.48101 * 4 3 2 6 6 C 1.38813 * 119.99834 * 212.75973 * 4 3 2 7 7 N 1.31619 * 120.00214 * 10.70680 * 6 4 3 8 8 Si 1.86803 * 119.99804 * 190.70620 * 6 4 3 9 9 H 1.48502 * 109.46821 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47090 * 120.00029 * 8 6 4 11 11 H 1.48497 * 109.46877 * 240.00083 * 8 6 4 12 12 C 1.46505 * 119.99617 * 264.31949 * 3 2 1 13 13 H 1.08997 * 109.47313 * 183.66232 * 12 3 2 14 14 C 1.52996 * 109.47298 * 63.66204 * 12 3 2 15 15 C 1.53006 * 109.47015 * 303.65830 * 12 3 2 16 16 N 1.46496 * 109.47427 * 305.00093 * 15 12 3 17 17 C 1.34777 * 120.00192 * 179.97438 * 16 15 12 18 18 O 1.21277 * 119.99824 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.99852 * 180.02562 * 17 16 15 20 20 H 1.08998 * 109.47629 * 60.00073 * 19 17 16 21 21 C 1.52998 * 109.47220 * 300.00083 * 19 17 16 22 22 C 1.52999 * 109.46838 * 180.02562 * 19 17 16 23 23 C 1.53782 * 113.61245 * 279.13416 * 22 19 17 24 24 C 1.53956 * 87.02108 * 220.04721 * 23 22 19 25 25 C 1.53781 * 87.11048 * 25.36411 * 24 23 22 26 26 H 1.08996 * 109.46905 * 60.01023 * 1 2 3 27 27 H 1.09006 * 109.46584 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47511 * 300.00001 * 1 2 3 29 29 H 1.08998 * 109.47511 * 239.99999 * 2 1 3 30 30 H 1.09002 * 109.47305 * 119.99096 * 2 1 3 31 31 H 0.97000 * 120.00006 * 179.97438 * 7 6 4 32 32 H 1.09010 * 109.47002 * 300.00045 * 14 12 3 33 33 H 1.08995 * 109.47210 * 59.99474 * 14 12 3 34 34 H 1.09002 * 109.47077 * 180.02562 * 14 12 3 35 35 H 1.09002 * 109.46771 * 65.00337 * 15 12 3 36 36 H 1.08998 * 109.46966 * 184.99744 * 15 12 3 37 37 H 0.97000 * 119.99434 * 0.02562 * 16 15 12 38 38 H 1.09008 * 109.47350 * 180.02562 * 21 19 17 39 39 H 1.09005 * 109.47181 * 299.99964 * 21 19 17 40 40 H 1.08995 * 109.47277 * 60.00138 * 21 19 17 41 41 H 1.08998 * 112.85210 * 50.33073 * 22 19 17 42 42 H 1.08994 * 113.61948 * 334.56612 * 23 22 19 43 43 H 1.09004 * 113.61391 * 105.47812 * 23 22 19 44 44 H 1.09000 * 113.54298 * 270.81762 * 24 23 22 45 45 H 1.08999 * 113.74684 * 139.94177 * 24 23 22 46 46 H 1.09003 * 113.62082 * 220.08796 * 25 24 23 47 47 H 1.09005 * 113.61883 * 89.18264 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1358 2.0660 1.1800 5 1 2.3889 1.5383 2.0876 6 6 1.9240 3.4376 1.2106 7 7 1.4084 4.0474 0.1644 8 14 2.3707 4.4178 2.7368 9 1 2.9296 3.5043 3.7657 10 1 3.3830 5.4460 2.3860 11 1 1.1551 5.0821 3.2717 12 6 2.3807 2.0300 -1.2626 13 1 2.7804 3.0234 -1.0590 14 6 1.1393 2.1514 -2.1485 15 6 3.4400 1.1916 -1.9810 16 7 4.5803 0.9750 -1.0871 17 6 5.6404 0.2576 -1.5089 18 8 5.6506 -0.2082 -2.6286 19 6 6.8131 0.0344 -0.5891 20 1 6.4786 -0.4912 0.3053 21 6 7.4144 1.3842 -0.1925 22 6 7.8723 -0.8039 -1.3076 23 6 7.5728 -2.3122 -1.3010 24 6 9.0777 -2.5284 -1.0584 25 6 9.1006 -1.1214 -0.4383 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 1.2600 5.0057 0.1860 32 1 0.7396 1.1579 -2.3521 33 1 0.3847 2.7486 -1.6366 34 1 1.4091 2.6337 -3.0880 35 1 3.0119 0.2298 -2.2635 36 1 3.7742 1.7173 -2.8755 37 1 4.5719 1.3473 -0.1915 38 1 8.2629 1.2227 0.4725 39 1 7.7491 1.9098 -1.0869 40 1 6.6600 1.9817 0.3192 41 1 8.1244 -0.4131 -2.2934 42 1 6.9463 -2.6294 -0.4675 43 1 7.2256 -2.6926 -2.2617 44 1 9.6594 -2.6103 -1.9766 45 1 9.2977 -3.3233 -0.3457 46 1 9.9847 -0.5416 -0.7033 47 1 8.8923 -1.1122 0.6316 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153973533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:24 Heat of formation + Delta-G solvation = -17.568809 kcal Electronic energy + Delta-G solvation = -23773.406765 eV Core-core repulsion = 20570.810809 eV Total energy + Delta-G solvation = -3202.595956 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.90512 -38.16483 -36.77652 -33.72744 -32.73131 -31.83837 -30.55193 -28.30913 -26.17297 -25.54482 -25.14243 -23.96616 -22.46684 -21.58160 -19.60102 -19.37549 -19.04894 -17.12905 -16.44174 -15.72669 -15.24779 -14.95038 -14.72856 -14.43234 -14.09880 -13.64340 -13.23069 -13.01497 -12.65413 -12.50184 -12.45120 -12.27623 -12.02277 -11.84200 -11.55098 -11.54221 -11.40305 -11.24264 -11.08538 -10.98545 -10.85134 -10.49750 -10.43568 -10.27513 -10.25234 -10.06919 -9.93675 -9.56708 -9.48362 -9.14151 -8.54729 -8.30964 -6.67177 -5.86335 -3.36625 3.18740 3.29927 3.39461 3.39941 3.83358 4.41496 4.62970 4.67535 4.74831 4.90623 5.18934 5.26881 5.31366 5.39602 5.48089 5.58013 5.71887 5.74861 5.79502 5.84618 5.91461 5.98453 6.05110 6.11272 6.13800 6.19570 6.27810 6.32636 6.39376 6.47588 6.52714 6.57577 6.59779 6.72957 6.80253 6.81846 6.98767 7.17117 7.28206 7.57684 7.65480 7.77815 8.25303 8.43917 8.84614 9.17776 9.77960 10.34019 11.19985 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017415 B = 0.004974 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.377916 B = 5627.497484 C = 6370.091189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.142 3.858 3 N -0.583 5.583 4 C -0.256 4.256 5 H 0.065 0.935 6 C 0.009 3.991 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.290 1.290 11 H -0.291 1.291 12 C 0.178 3.822 13 H 0.105 0.895 14 C -0.142 4.142 15 C 0.101 3.899 16 N -0.704 5.704 17 C 0.510 3.490 18 O -0.560 6.560 19 C -0.102 4.102 20 H 0.093 0.907 21 C -0.143 4.143 22 C -0.085 4.085 23 C -0.132 4.132 24 C -0.144 4.144 25 C -0.136 4.136 26 H 0.049 0.951 27 H 0.027 0.973 28 H 0.051 0.949 29 H 0.037 0.963 30 H 0.035 0.965 31 H 0.253 0.747 32 H 0.027 0.973 33 H 0.080 0.920 34 H 0.028 0.972 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.409 0.591 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.560 -7.344 -0.967 12.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.016 3.984 3 N -0.305 5.305 4 C -0.386 4.386 5 H 0.082 0.918 6 C -0.190 4.190 7 N -0.539 5.539 8 Si 0.729 3.271 9 H -0.203 1.203 10 H -0.216 1.216 11 H -0.217 1.217 12 C 0.070 3.930 13 H 0.123 0.877 14 C -0.201 4.201 15 C -0.025 4.025 16 N -0.354 5.354 17 C 0.295 3.705 18 O -0.439 6.439 19 C -0.123 4.123 20 H 0.111 0.889 21 C -0.200 4.200 22 C -0.104 4.104 23 C -0.169 4.169 24 C -0.181 4.181 25 C -0.174 4.174 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.099 0.901 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.246 0.754 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.508 -7.488 -1.765 13.023 hybrid contribution -0.134 0.821 1.199 1.459 sum 10.374 -6.667 -0.566 12.344 Atomic orbital electron populations 1.22391 0.99840 0.98306 1.02049 1.20790 0.91881 0.87691 0.98013 1.43958 1.73872 1.09760 1.02933 1.19188 1.41408 0.90210 0.87827 0.91772 1.25175 0.98650 0.98159 0.97032 1.69947 1.45715 1.09118 1.29142 0.86287 0.77734 0.80140 0.82965 1.20309 1.21643 1.21747 1.20536 0.90890 0.96689 0.84848 0.87737 1.22120 1.00655 0.99352 0.97981 1.22090 0.87386 1.00250 0.92731 1.45983 1.17490 1.53105 1.18847 1.20540 0.83815 0.78239 0.87890 1.90622 1.81278 1.50932 1.21070 1.21324 0.94093 0.98242 0.98657 0.88891 1.21740 1.01288 0.95272 1.01727 1.22309 0.94067 0.94744 0.99240 1.22914 0.95770 0.96106 1.02148 1.22837 0.97343 0.97176 1.00743 1.22965 0.98067 0.96784 0.99572 0.93160 0.95407 0.92956 0.94491 0.94693 0.93644 0.95374 0.90139 0.95309 0.93153 0.93040 0.75435 0.91768 0.92359 0.91675 0.88734 0.90498 0.91312 0.90490 0.91782 0.91696 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 10.02 37.16 0.37 -2.86 16 2 C 0.14 2.88 5.73 -4.04 -0.02 2.86 16 3 N -0.58 -12.99 1.83 -165.65 -0.30 -13.30 16 4 C -0.26 -6.28 9.51 -15.06 -0.14 -6.43 16 5 H 0.06 1.58 7.85 -52.49 -0.41 1.17 16 6 C 0.01 0.23 5.02 -17.43 -0.09 0.14 16 7 N -0.90 -23.45 9.91 55.49 0.55 -22.90 16 8 Si 0.90 20.19 29.57 -169.99 -5.03 15.16 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.18 3.82 1.92 -67.93 -0.13 3.69 16 13 H 0.10 2.56 5.96 -51.93 -0.31 2.25 16 14 C -0.14 -2.96 8.23 37.16 0.31 -2.66 16 15 C 0.10 1.97 4.85 -4.04 -0.02 1.95 16 16 N -0.70 -12.76 5.28 -60.30 -0.32 -13.08 16 17 C 0.51 8.85 7.13 -10.99 -0.08 8.77 16 18 O -0.56 -11.38 15.82 5.56 0.09 -11.29 16 19 C -0.10 -1.37 2.45 -91.77 -0.23 -1.59 16 20 H 0.09 1.18 7.98 -51.93 -0.41 0.77 16 21 C -0.14 -1.72 8.91 37.16 0.33 -1.38 16 22 C -0.08 -1.06 2.51 -89.81 -0.23 -1.28 16 23 C -0.13 -1.59 7.54 -25.83 -0.19 -1.79 16 24 C -0.14 -1.41 8.09 -25.83 -0.21 -1.62 16 25 C -0.14 -1.35 6.75 -25.92 -0.17 -1.53 16 26 H 0.05 1.00 6.03 -51.93 -0.31 0.69 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.04 0.72 6.35 -51.93 -0.33 0.39 16 30 H 0.03 0.70 8.09 -51.93 -0.42 0.28 16 31 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 32 H 0.03 0.55 6.49 -51.92 -0.34 0.21 16 33 H 0.08 1.91 7.12 -51.93 -0.37 1.54 16 34 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.05 1.01 6.75 -51.93 -0.35 0.66 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.41 7.49 7.50 -40.82 -0.31 7.18 16 38 H 0.06 0.64 7.50 -51.92 -0.39 0.26 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.82 7.56 -51.93 -0.39 0.43 16 41 H 0.09 1.31 7.91 -51.93 -0.41 0.90 16 42 H 0.08 0.91 7.99 -51.93 -0.41 0.50 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 LS Contribution 363.16 15.07 5.47 5.47 Total: -1.00 -26.77 363.16 -8.57 -35.34 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -8.53 Total: 8.32 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -0.50 Total: -3.73 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: -0.07 Total: -49.27 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.16 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -26.77 -8.57 -35.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153973533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.775 kcal (2) G-P(sol) polarization free energy of solvation -26.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds