Wall clock time and date at job start Tue Mar 31 2020 05:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.46579 * 2 1 4 4 C 1.36936 * 120.00463 * 84.32036 * 3 2 1 5 5 H 1.07996 * 119.99931 * 32.48101 * 4 3 2 6 6 C 1.38813 * 119.99834 * 212.75973 * 4 3 2 7 7 N 1.31619 * 120.00214 * 10.70680 * 6 4 3 8 8 Si 1.86803 * 119.99804 * 190.70620 * 6 4 3 9 9 H 1.48502 * 109.46821 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47090 * 120.00029 * 8 6 4 11 11 H 1.48497 * 109.46877 * 240.00083 * 8 6 4 12 12 C 1.46505 * 119.99617 * 264.31949 * 3 2 1 13 13 H 1.08997 * 109.47313 * 183.66232 * 12 3 2 14 14 C 1.52996 * 109.47298 * 63.66204 * 12 3 2 15 15 C 1.53006 * 109.47015 * 303.65830 * 12 3 2 16 16 N 1.46496 * 109.47427 * 305.00093 * 15 12 3 17 17 C 1.34777 * 120.00192 * 179.97438 * 16 15 12 18 18 O 1.21277 * 119.99824 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.99852 * 180.02562 * 17 16 15 20 20 H 1.08998 * 109.47629 * 60.00073 * 19 17 16 21 21 C 1.52998 * 109.47220 * 300.00083 * 19 17 16 22 22 C 1.52999 * 109.46838 * 180.02562 * 19 17 16 23 23 C 1.53782 * 113.61245 * 279.13416 * 22 19 17 24 24 C 1.53956 * 87.02108 * 220.04721 * 23 22 19 25 25 C 1.53781 * 87.11048 * 25.36411 * 24 23 22 26 26 H 1.08996 * 109.46905 * 60.01023 * 1 2 3 27 27 H 1.09006 * 109.46584 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47511 * 300.00001 * 1 2 3 29 29 H 1.08998 * 109.47511 * 239.99999 * 2 1 3 30 30 H 1.09002 * 109.47305 * 119.99096 * 2 1 3 31 31 H 0.97000 * 120.00006 * 179.97438 * 7 6 4 32 32 H 1.09010 * 109.47002 * 300.00045 * 14 12 3 33 33 H 1.08995 * 109.47210 * 59.99474 * 14 12 3 34 34 H 1.09002 * 109.47077 * 180.02562 * 14 12 3 35 35 H 1.09002 * 109.46771 * 65.00337 * 15 12 3 36 36 H 1.08998 * 109.46966 * 184.99744 * 15 12 3 37 37 H 0.97000 * 119.99434 * 0.02562 * 16 15 12 38 38 H 1.09008 * 109.47350 * 180.02562 * 21 19 17 39 39 H 1.09005 * 109.47181 * 299.99964 * 21 19 17 40 40 H 1.08995 * 109.47277 * 60.00138 * 21 19 17 41 41 H 1.08998 * 112.85210 * 50.33073 * 22 19 17 42 42 H 1.08994 * 113.61948 * 334.56612 * 23 22 19 43 43 H 1.09004 * 113.61391 * 105.47812 * 23 22 19 44 44 H 1.09000 * 113.54298 * 270.81762 * 24 23 22 45 45 H 1.08999 * 113.74684 * 139.94177 * 24 23 22 46 46 H 1.09003 * 113.62082 * 220.08796 * 25 24 23 47 47 H 1.09005 * 113.61883 * 89.18264 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1358 2.0660 1.1800 5 1 2.3889 1.5383 2.0876 6 6 1.9240 3.4376 1.2106 7 7 1.4084 4.0474 0.1644 8 14 2.3707 4.4178 2.7368 9 1 2.9296 3.5043 3.7657 10 1 3.3830 5.4460 2.3860 11 1 1.1551 5.0821 3.2717 12 6 2.3807 2.0300 -1.2626 13 1 2.7804 3.0234 -1.0590 14 6 1.1393 2.1514 -2.1485 15 6 3.4400 1.1916 -1.9810 16 7 4.5803 0.9750 -1.0871 17 6 5.6404 0.2576 -1.5089 18 8 5.6506 -0.2082 -2.6286 19 6 6.8131 0.0344 -0.5891 20 1 6.4786 -0.4912 0.3053 21 6 7.4144 1.3842 -0.1925 22 6 7.8723 -0.8039 -1.3076 23 6 7.5728 -2.3122 -1.3010 24 6 9.0777 -2.5284 -1.0584 25 6 9.1006 -1.1214 -0.4383 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 1.2600 5.0057 0.1860 32 1 0.7396 1.1579 -2.3521 33 1 0.3847 2.7486 -1.6366 34 1 1.4091 2.6337 -3.0880 35 1 3.0119 0.2298 -2.2635 36 1 3.7742 1.7173 -2.8755 37 1 4.5719 1.3473 -0.1915 38 1 8.2629 1.2227 0.4725 39 1 7.7491 1.9098 -1.0869 40 1 6.6600 1.9817 0.3192 41 1 8.1244 -0.4131 -2.2934 42 1 6.9463 -2.6294 -0.4675 43 1 7.2256 -2.6926 -2.2617 44 1 9.6594 -2.6103 -1.9766 45 1 9.2977 -3.3233 -0.3457 46 1 9.9847 -0.5416 -0.7033 47 1 8.8923 -1.1122 0.6316 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153973533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:23 Heat of formation + Delta-G solvation = -30.650611 kcal Electronic energy + Delta-G solvation = -23773.974035 eV Core-core repulsion = 20570.810809 eV Total energy + Delta-G solvation = -3203.163225 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.14545 -39.37535 -38.40120 -35.28817 -33.96319 -33.61421 -32.14842 -30.08764 -27.31062 -26.85602 -26.05893 -25.78314 -23.65846 -23.24285 -21.07829 -20.72090 -20.21180 -18.84660 -17.83184 -17.10495 -16.64835 -16.43193 -16.12575 -15.82243 -15.46661 -15.26129 -14.70455 -14.44313 -14.06997 -13.85491 -13.56677 -13.43838 -13.33260 -13.23502 -13.07310 -13.00337 -12.92788 -12.78227 -12.62729 -12.44925 -12.17962 -12.08547 -12.01917 -11.74750 -11.36908 -11.26857 -11.26006 -11.18949 -10.97062 -10.53557 -10.43579 -9.85050 -8.51343 -7.77880 -5.29088 1.50092 1.55514 1.62083 1.79652 2.45712 2.57040 3.38661 3.63109 3.69134 3.77388 3.80369 4.02212 4.09825 4.27262 4.34855 4.46111 4.48485 4.55111 4.56274 4.75023 4.84777 4.87766 4.89599 4.90954 4.91788 4.92699 4.96614 5.04986 5.08941 5.11933 5.13937 5.18041 5.18969 5.32695 5.34426 5.45140 5.60041 5.61638 5.68105 5.76817 5.80134 5.95609 6.53265 6.79793 7.27695 7.41607 7.95132 8.46552 9.26314 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017415 B = 0.004974 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.377916 B = 5627.497484 C = 6370.091189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.142 3.858 3 N -0.590 5.590 4 C -0.255 4.255 5 H 0.064 0.936 6 C -0.034 4.034 7 N -0.918 5.918 8 Si 0.954 3.046 9 H -0.268 1.268 10 H -0.293 1.293 11 H -0.302 1.302 12 C 0.185 3.815 13 H 0.076 0.924 14 C -0.131 4.131 15 C 0.114 3.886 16 N -0.704 5.704 17 C 0.507 3.493 18 O -0.591 6.591 19 C -0.094 4.094 20 H 0.106 0.894 21 C -0.138 4.138 22 C -0.092 4.092 23 C -0.140 4.140 24 C -0.135 4.135 25 C -0.124 4.124 26 H 0.040 0.960 27 H 0.057 0.943 28 H 0.030 0.970 29 H 0.045 0.955 30 H 0.040 0.960 31 H 0.246 0.754 32 H 0.038 0.962 33 H 0.050 0.950 34 H 0.041 0.959 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.409 0.591 38 H 0.091 0.909 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.047 0.953 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.074 -8.453 0.155 14.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.017 3.983 3 N -0.312 5.312 4 C -0.385 4.385 5 H 0.081 0.919 6 C -0.230 4.230 7 N -0.563 5.563 8 Si 0.784 3.216 9 H -0.192 1.192 10 H -0.220 1.220 11 H -0.230 1.230 12 C 0.078 3.922 13 H 0.094 0.906 14 C -0.191 4.191 15 C -0.012 4.012 16 N -0.354 5.354 17 C 0.294 3.706 18 O -0.473 6.473 19 C -0.115 4.115 20 H 0.124 0.876 21 C -0.196 4.196 22 C -0.111 4.111 23 C -0.178 4.178 24 C -0.172 4.172 25 C -0.161 4.161 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.246 0.754 38 H 0.109 0.891 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.066 0.934 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.034 -8.617 -0.631 14.814 hybrid contribution -0.636 1.112 0.807 1.514 sum 11.398 -7.505 0.176 13.648 Atomic orbital electron populations 1.22263 0.99103 0.99783 1.00467 1.20858 0.92383 0.86506 0.98601 1.44045 1.74227 1.10369 1.02587 1.19350 1.40334 0.90384 0.88452 0.91857 1.25715 0.99250 0.99048 0.99031 1.70095 1.47002 1.08685 1.30494 0.85413 0.76686 0.78817 0.80683 1.19236 1.22021 1.22988 1.20347 0.91433 0.95538 0.84901 0.90627 1.21965 0.99617 0.99439 0.98046 1.21802 0.87409 0.99425 0.92584 1.45986 1.17458 1.53412 1.18565 1.21285 0.84262 0.77013 0.87999 1.90606 1.81889 1.52077 1.22721 1.21363 0.92620 0.99460 0.98094 0.87591 1.21732 1.01888 0.94074 1.01895 1.22323 0.95216 0.94551 0.98983 1.22964 0.97654 0.95962 1.01180 1.22809 0.95281 0.97791 1.01327 1.22934 0.96890 0.96536 0.99722 0.94106 0.92384 0.95066 0.93678 0.94211 0.94403 0.94328 0.93077 0.94040 0.93520 0.93315 0.75414 0.89059 0.92986 0.92448 0.90634 0.90296 0.93363 0.90126 0.90251 0.90482 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.90 10.02 71.98 0.72 -5.17 16 2 C 0.14 5.57 5.73 86.38 0.50 6.06 16 3 N -0.59 -26.08 1.83 -678.01 -1.24 -27.32 16 4 C -0.25 -12.38 9.51 84.03 0.80 -11.58 16 5 H 0.06 3.06 7.85 -2.91 -0.02 3.04 16 6 C -0.03 -1.69 5.02 84.86 0.43 -1.27 16 7 N -0.92 -48.81 9.91 21.65 0.21 -48.59 16 8 Si 0.95 41.53 29.57 68.60 2.03 43.56 16 9 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 10 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 12 C 0.18 7.98 1.92 44.99 0.09 8.07 16 13 H 0.08 3.77 5.96 -2.39 -0.01 3.75 16 14 C -0.13 -5.50 8.23 71.98 0.59 -4.91 16 15 C 0.11 4.43 4.85 86.38 0.42 4.85 16 16 N -0.70 -25.25 5.28 -463.07 -2.45 -27.69 16 17 C 0.51 17.34 7.13 87.66 0.62 17.97 16 18 O -0.59 -24.12 15.82 -3.02 -0.05 -24.17 16 19 C -0.09 -2.39 2.45 -11.54 -0.03 -2.41 16 20 H 0.11 2.44 7.98 -2.39 -0.02 2.42 16 21 C -0.14 -3.06 8.91 71.98 0.64 -2.42 16 22 C -0.09 -2.15 2.51 -10.27 -0.03 -2.18 16 23 C -0.14 -3.21 7.54 31.18 0.24 -2.98 16 24 C -0.13 -2.31 8.09 31.18 0.25 -2.06 16 25 C -0.12 -2.07 6.75 31.12 0.21 -1.86 16 26 H 0.04 1.59 6.03 -2.39 -0.01 1.58 16 27 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.04 1.69 6.35 -2.39 -0.02 1.68 16 30 H 0.04 1.52 8.09 -2.39 -0.02 1.50 16 31 H 0.25 13.02 8.31 -92.71 -0.77 12.25 16 32 H 0.04 1.50 6.49 -2.38 -0.02 1.48 16 33 H 0.05 2.45 7.12 -2.39 -0.02 2.43 16 34 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.05 1.85 6.75 -2.39 -0.02 1.84 16 36 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.41 14.76 7.50 -92.71 -0.70 14.06 16 38 H 0.09 1.53 7.50 -2.38 -0.02 1.51 16 39 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.06 1.36 7.56 -2.39 -0.02 1.34 16 41 H 0.08 2.06 7.91 -2.39 -0.02 2.05 16 42 H 0.08 1.75 7.99 -2.39 -0.02 1.73 16 43 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.09 1.36 8.10 -2.38 -0.02 1.34 16 Total: -1.00 -57.27 363.16 4.19 -53.08 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: 0.23 Total: 31.03 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 5.45 Total: 0.11 kcal Atomic # 7 Polarization: -100.14 SS G_CDS: -3.47 Total: -103.61 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.05 Total: -24.17 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -57.27 4.19 -53.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153973533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.430 kcal (2) G-P(sol) polarization free energy of solvation -57.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds